2.1 Network target prediction
Twenty-two main compounds in RSLD were selected for prediction of biological targets using the Lab of Systems Pharmacology database (http://tcmspw.com/). Then the SwissTargetPrediction database (http://www. swisstargetprediction .ch/) was used to obtain the Uniprot ID of predicted targets. The biological targets associated with hyperlipidemia were chosen from the GAD (https:// geneticassociationdb.nih.gov/) and GeneCards ( https://www. genecards.org/) database. Finally, the Cytoscape 3.6.1 software (Bethesda, MD, USA) was used to establish the components-targets-disease network.
2.2 Animals and feeding
Male Wistar rats (body mass: 200 ± 20 g) were purchased from Jinan Pengyue Experimental Animal Breeding Co. Ltd., and were housed under specific pathogen-free conditions. RSLD cotains Renshen (6 g), Huangjing (15 g), Gegen (30 g), Zexie (30 g), Cangzhu (15 g), and Shanzha (15 g). First, these drugs (Jianlian Chinese Medicine Co. Ltd., China) were pulverized to a superfine powder, then dissolved in 111 ml water (10x total drug weight) and heated to reflux for 40 minutes. Next, another 111 ml of water was added for another 40 minutes of reflux after filtering, and the solution was concentrated using a rotary evaporator at 50°C. Finally, RSLD was prepared to a final total concentration of 3 g drug product/ml and stored at 4°C.
2.3 Reagents and equipment
Liquid chromatography was performed using the 2777C UPLC SYSTEM (Waters, UK) with a diode array detector. In this work, we used a mass spectrometer (Xevo G2-XS QTOF, Waters, UK), 3-18K cryogenic high-speed centrifuge (Sigma Company, Germany), automatic biochemical analyzer (Vital Scientific, Netherlands), high-speed centrifuge (Shanghai Medical Analyzer, China), reagents for detecting blood lipid (Nanjing Jiancheng Biotech Inc., China), Western blotting (Wuhan Servicebio Biotechnology Co., Ltd , China), methanol, formic acid, acetonitrile, Milli-Q ultrapure water system, deuterated reagent, High fat diet (HFD, 10% lard, 10% egg yolk powder, 2% cholesterol, 0.2% bile salt and 0.2% 6-methyl-2-thiouracil. Keao Co., Ltd , Beijing, China), xuezhikang (XZK, Beida Weixin Co., Ltd, China, Chinese medicine number: Z10950029).
2.4 Establishment of the hyperlipidemia model
Hyperlipidemia rat model was established based on the method of Ji et al 2018 [12]. Briefly, rats were housed in separate cages with a normal diet and free access to water at the temperature of 23°C, 50% relative humidity, and a 12 h light-dark cycle. After one week, the rats were randomly divided into control group (n=8) fed with the general diet, and hyperlipidemia model group fed with HFD every day. After 5 weeks, the rats were fasted for 12 h, and then blood samples were taken from the tail for measurement of blood lipid levels in order to verify a successful model of hyperlipidemia. Finally, the animals were randomly divided into model group (n=8), XZK group (n=8) and RSLD group (n=8).
2.5 Dosing measurement design
The control group was given saline (0.5 ml/100 g), model, XZK and RSLD groups were given HFD (0.5 ml/100 g) every morning. In the afternoon, the control group was given saline (0.5 ml/100 g, according to their body weight), the XZK group was given XZK (0.5 ml/100 g) and the rats in the RSLD group was administered RSLD (0.5 ml/100 g, according to the transforming formula= (daily dose of RSLD in human (g))/human weight (kg)) ×9.1, the usual human weight is 60kg in China and 40g/d is the daily dose in humans, so the rat dose is 6g/d ) from the 6th week to 9th week.
2.6 Sample preparation
After 4 weeks treatment, each rat was placed alone in a metabolic cage to collect urine samples for 24 hours. Next, 40 μl of urine was added in a microcentrifuge tube, followed by the addition of 120 μl of cold methanol, and centrifugation at 3,500rmp for 10 min. Next, 25 μl of supernatant was placed into a new eppendorf tube and diluted with 225 μl of 50% methanol. Finally, 25 μl of each sample was mixed into a quality control (QC) sample for liquid chromatography and mass spectrometry analysis. Blood was collected from the carotid artery, and the serum was separated by centrifugation at 3,500rpm for 10 min. Serum was stored at −80 ℃ for further biochemistry examinations.
2.7 Western blotting
First, the hepatic tissue was extracted and the total protein was obtained by using RIPA buffer containing PMSF, and then centrifuging at 12000 rpm for 10 min. Second, the nuclear protein was extracted and the concentration was determined by the BCA protein assay. Third, the total protein was subjected to SDS-PAGE gel electrophoresis and electroblotted onto a PVDF membrane, and the membrane was blocked in 5% BSA for 1 h and then incubated with the following primary antibody overnight at 4 °C. Antibodies: ACTIN (mouse monoclonal antibody 1:1000), low density lipoprotein receptor (LDLR, rabbit monoclonal antibody 1:1000 ), and then incubated the membrane with 1:3000 secondary antibody and visualized the conjugate using the ECL system. Finally, the protein expression was analyzed using the odyssey imaging system.
2.8 Chromatography and mass spectrometry conditions
Firstly, UPLC system was used to perform chromatographic separations. An ACQUITY UPLC HSS T3 column (100 mm*2.1 mm,1.8 µm) was used for reverse phase separation, and the column oven was maintained at 45℃. The mobile phase using solvent A (water+0.1% formic acid) and solvent B (acetonitrile+0.1% formic acid), the flow rate was set at 0.4 ml/min. Gradient elution conditions were set as follows:0-1 min,99% phase A;1-3 min,1% to 15% phase B;3-6 min,15%-50% phase B; 6-9 min, 50% to 95% phase A, 9-10 min, 95% phase B; 10-12 min,99% phase A. The injection volume for per sample was 10 µl.
The high resolution tandem mass spectrometer was used to detect the metabolites eluted from the column. Q-TOF was divided into two modes: positive ion and negative ion. The sample cone and capillary voltage were set at 2.5kv and 60v in the positive (POS) ion mode, and 2.0 kv and 40v in the negative (NEG) ion mode, respectively. MS data was obtained in centroid mode from 50 to 1200 da with 0.2 s/scan. The precursors were fragmented using 20-40 eV in MS/MS detection with 0.2 s/scan. In order to evaluate the stability of UPLC-Q-TOF-MS during the acquisition process, one QC sample was taken every 8 samples.
2.9 Statistical analysis
The total ion current (TIC) data was collected by UPLC-Q-TOF-MS and the data matrix of mass detection, retention time and peak intensity was processed by peak detection, matching, alignment and control processing. The score plot was obtained by partial least squares discriminant analysis in SIMCA-P12.0. The significant metabolites were selected from the resulting data set by discriminant analysis and multivariate statistical methods. Variable importance projection (VIP) values > 1.0 and P value < 0.05 were considered to be potential biomarkers. To check exact molecular weight, two online databases were queried—METLIN (http://www.metlin. scipps.edu) and HMDB (http://www.hmdb.ca) to explain the mass spectra and identify the structure of the compounds.