The findings of our study indicated that the composition of vaginal microbiota was unfavorably affected by COVID-19 disease and there was a prominent dysbiosis during active COVID-19 infection. Intrauterine infection is a well-established reason for preterm birth. The most common and genuine pathway is that microorganisms can access the amniotic cavity by ascending from the vagina and cervix, resulting in the development of intrauterine infection and subsequent inflammatory response in fetoplacental tissues that eventuates preterm birth [16, 17]. Since evidence on the relation of dysbiosis in vaginal microbiota and preterm birth is accumulating, we can speculate that one of the mechanisms for the explanation of increased rate of COVID-19-associated PTB may be vaginal dysbiosis [5, 18, 19].
Vaginal dysbiosis is defined as an increase of alpha diversity in vaginal microbiome communities [20]. The study found that the Shannon index was remarkably high (1.16) in the COVID-19 group compared to the healthy controls (0.75). Recent studies have revealed that vaginal dysbiosis has a negative impact on vaginal protective mechanisms via increasing local pro-inflammatory effectors [21, 22].
We identified diminished Lactobacillus communities in women with COVID-19 disease, particularly more profound in those with moderate or severe disease (77%) when compared to the healthy controls (93%; P=0.04). Lactobacillus delbrueckii (P=0.046) significantly decreased among women with COVID-19. Within-subgroup analysis, Lactobacillus gasseri (L. gasseri) disappeared in patients with moderate or severe disease. It is well-established that pregnant women with low amounts of L. crispatus, L. gasseri, or L. jensenii in their vaginal microbiota are more likely to deliver before term [9, 23]. In a case-control study, the abundance of L. gasseri was found to be associated with decreased risk of early spontaneous preterm birth [24].
In the longitudinal study with three patients, we didn't perform analysis at the species level because of the small sample size. There was approximately a 40% decline in the relative abundance of Firmicutes and Bacteroides during the active COVID-19 period, which was sustained after recovery. In addition, the abundance of Actinobacteria was the highest in the active disease stage compared to the pre and post COVID-19 periods. Ceccarani et al. revealed that the vaginal flora of healthy women was constituted of mainly Firmicutes and Bacteroidetes, albeit with a low abundance of Actinobacteria [25]. In view of our findings, it would be considered that SARS-CoV-2 infection negatively affects the vaginal compositions of pregnant women.
Disruption of balance of vaginal microbiota causes invades of several facultative or strict anaerobes, including Gardneralla vaginalis, Mycoplasma hominis, Prevotella spp., Fusobacterium spp., Ureoplasma spp., and Porphyromonas spp. and replacement of Lactobacilli [26–28]. Aligning with the aforementioned results, we identified a significantly higher abundance of Bacteroidetes in COVID-19 group. In particular, Prevotella timonensis was only identified in women with COVID-19 (0.04%). Likewise, Dialister propionicifaciens appeared in the COVID-19 group (0.02%). The SARS-CoV-2 infection triggers the production of prostaglandins and pro-inflammatory mediators to confer ischemia resulting in widespread tissues [29, 30]. Notably, we determined an increase of anaerobic species such as Gardnerella vaginalis, Anaerococcus tetradius, Fusobacterium nucleatum, Prevotella timonensis abundance in women with severe disease. Based on these results, we postulated that ischemia in genito-urinary compartments could be a predisposing factor for overgrowth of anaerobes in vaginal microbiota.
Pregnant women are more susceptible to SARS-CoV-2 infection due to physiological, mechanical, and immunological changes during pregnancy [2, 31]. Data supported that pregnancy is a risk factor for severe disease related to COVID-19 [4, 32]. Recently, in a large population-based cohort study, fetal death and preterm birth occurred more frequently in women with SARS-CoV-2 infection than non-infected women (adjusted odds ratio (aOR), 2.21; 95% confidence interval (CI), 1.58 – 3.11; P< 0.001 and OR, 2.17; 95% CI, 1.96 – 2.4; P<0.001, respectively) [1]. In the study, the prevalence of preterm birth (15.3%) was high, especially in the severe COVID-19 (2 out of 3 preterm birth), as compared to the prevalence reported before COVID-19 (9.6%) [33]. Even with the small sample size of our study, the rate of preterm birth increased in women with severe COVID-19 disease than those with asymptomatic or mild disease, aligning with a recent meta-analysis [34]. The abundance of Ureaplasma and Mycoplasma species increased the risk of preterm delivery through chorioamnionitis, salpingitis, bacterial vaginosis, and postpartum endometritis [20, 35]. We found that Mycoplasma hominis (8% vs. 0%; P=0.01) and Ureaplasma spp. (2.09% vs. 0.04%, p=0.001) showed significantly higher abundance in moderate or severe cases compared to those of the healthy controls. Of note, the abundance of Ureaplasma spp. was significantly higher in women with moderate or severe disease than those of asymptomatic or mild disease (p=0.005). We claim in light of these findings and previous evidence from microbiota studies that the subsequent preterm birth in women with severe disease could be a consequence of impaired vaginal composition.
There are several limitations. Our sample size was small to detect the statistical significance between women with severe COVID-19 and women with asymptomatic or mild disease, albeit with some significant differences. Secondly, a potential confounding factor that may differ among the groups was the use of antibiotics at the time of sample collection from severe cases during the active stage.
In conclusion, COVID-19 causes dysbiosis in vaginal microbiota with a significant reduction in the abundance of Lactobacillus combined with an increase of Bacteroidetes, especially in Prevotella timonensis. We detected that the severity of the disease was associated with increased Ureaplasma spp. Based on these findings, we suggest that COVID-19 promotes an unfavorable vaginal microenvironment, which may provide insight into the risk of adverse pregnancy outcomes such as preterm birth. These results raise clinically relevant questions regarding the use of microbiome associated biomarkers as a risk assessment tool for preterm birth in pregnant women during COVID-19. The implication of findings would postulate possible targeted therapy, comprising modification of the vaginal microbiota composition in pregnant women with COVID-19.