Fc-evolution in early life
Transferred IgG increases with the trimesters (13), resulting in highest levels of antibody transfer in the third trimester of gestation (9,16,17). Consequently, preterm infants are believed to have a compromised immune response due to lower levels of antibody transfer (30,31). However, recent studies, focused on the evaluation of neutralizing titers rather than binding antibody titers, pointed to equivalent levels of neutralizing antibody transfer in preterm infants compared to full term neonates, despite the transfer of higher antibody titers with increased gestational age (15). Given our emerging understanding for potential selective transfer of antibodies across the placenta, we comprehensively profiled the humoral immune response across 24 vaccine or pathogen-derived antigens (Table 1) in a cohort of 11 preterm and 12 term mother:child pairs over the course of the first 3 months of life (Figure 1)(7).
As expected, IgGs, IgM, IgAs, and Fc-receptor binding antibodies were highly heterogeneous among mothers of both preterm and term babies (Figure 1). However, expected patterns were observed across these isotypes over time. Specifically, IgG and IgG subclasses were detectable at week 0 in the cords, and then declined by week 4 and 12 in peripheral blood as the antibodies waned. Conversely, as expected, substantial levels of IgM and IgA1 responses were only detected in the mothers, were absent in the cord, and IgM and IgA1 began to evolve in a limited number of infants by 3 months following birth. Interestingly, Fc-receptor binding antibodies were detectable in the mothers, were detectable in the cords at birth, but then decayed rapidly to very low levels by the third month of life, with a more rapid and profound decline in the preterm infants. Similar profiles were detected for antigen-specific antibody dependent cellular phagocytosis (ADCP) and antibody dependent neutrophil phagocytosis (ADNP), with variable but detectable functions detected across antigens in the mothers as well as the cord. However, the decline in transferred functional antibodies was more similar across the preterm and full-term baby sets, with some novel ADCP responses appearing to particular antigens by 3 months of life.
Despite the similarities in transfer and decay across the mother:infant groups, a correlation matrix of all antibody features between mother and cord hinted at differential coordination of antibody transfer to pre- and full-term infants (Figure S1A-B). Specifically, while antibody profiles were more highly coordinated in full-term mother:cord pairs, antibody transfer relationships were less coordinated in preterm dyads. Of note, the pneumo- and pertussis-specific antibody features were positively correlated in term mother:cord pairs, but were not correlated in the preterm pairs. Similarly, correlations were largely negative (not statistically significant) in preterm pairs. Thus collectively, these data highlight less coordinated antibody transfer profiles in preterm infant pairs decay profiles across pre- and full-term dyads.
Convergence of antibody profiles over time
Accumulating data points to striking differences in cellular immune function and frequencies in neonates compared to their mothers’, irrespective of gestational age, that are lost over the first few months of life (7). To begin to examine whether similar patterns may exist within the humoral immune response, we used an unsupervised principal component analysis (PCA) to examine overall antibody profiles across the timepoints and samples (Figure 2A). As expected, separation was observed across timepoints, where mothers and cord samples scattered together, but a progressive divergent shift was observed for infant antibody profiles with time from birth (Figure 2A). Moreover, while the level of variation in maternal:cord samples was significant, less variation was observed in antibody profiles at weeks 1-4, with renewed variation appearing at 3 months following birth.
Interestingly, to determine whether this unsupervised approach could pick up any variation between full-term and preterm babies, each principal component (PC) was examined systematically. PC1 picked up variation within groups (Figure 2A). Conversely, PC5 showed interesting partial discriminatory power between preterm (pink) and term (green) infants (Figure 2B). PC2-PC4 captured variation in the data that was not related to groups or preterm and fullterm status (Supplemental Figure 2A-C). . Interestingly, the greatest variation in antibody profiles across the full- and pre-term infants occurred at birth, and these differences were lost overtime. Thus, collectively, these data highlight the differences in preterm infant immunity at birth, that wanes in both groups and converges during the first few weeks of life.
To further gain a sense of what contributes to this variation between the two groups of infants, we next examined differences in the transfer and kinetics of decay of antibody subclass, isotype, and Fc-receptor binding profiles over time (Figure 2C). As expected, evidence of preferential transfer of IgGs was observed in the full-term babies compared to IgA and IgM transfer. Conversely, less selective transfer was observed among the IgGs in premature infants, albeit IgAs and IgMs were also deliberately not transferred. As expected, IgG transfer was linked to enhanced FcRn binding in full-term infants after birth, coincident with a small, but heterogeneous, increase in FCGR3 binding antibodies and more persistent FCR2 binding antibodies in the full-term infants. Importantly, the robust increase in FcRn binding in full-term infants was disproportionate to the level of transferred IgG1 levels, pointing a qualitative shift in antibody quality selectively trapped and transferred to infants at birth. In contrast, preterm infants exhibited a diminished FcRn binding signature, and more limited FCgR3 binding antibody levels right after birth, likely related to diminished IgG1 transfer, but a more similar FCgR2 binding profile over time. These data highlight expected antibody isotype subclass differences across full- and preterm infants linked to unexpected Fc-receptor binding profiles over time.
Selective impaired transfer of particular antigen-specific antibodies in preterm children
To further define the specific features that were most highly perturbed in PC1 (variation across time) and PC5 (variation by gestational age), loadings on each PC were plotted for each measured variable, where each dot represents an antigen-specificity grouped by each Fc-measurement. As anticipated, greatest temporal changes were observed among IgG/IgG1 antibodies across nearly all antigen-specificities, representing the dominant transferred antibody population from mother:infant (Figure 3A). In addition, these IgG differences tracked with significant alterations in Fc-receptor binding profiles, that evolve uniquely over time. Less variation in FcRn, largely involved in early transfer, followed by FcgR (Figure 3A) was observed over time, although some variation was notable across specificities.
Gestational age variation was examined using PC5 scores (Figure 3B). Strikingly less variation was observed in this dimension, although variation was largely restricted again to IgG/IgG1 and Fc-receptor binding profiles. Interestingly, variation along PC5 was largely uniform for each Fc-receptor highlighting conserved principles of Fc-receptor mediated transfer across gestational ages. However, differences in transfer were noted for a specific subset of antigen-specificities. The top two antigen-specificities, which were consistently higher in preterm (positive loading on PC5) across Fc measurements, included nBosd8 (Bovine milk allergen) and Diphtheria.
To therefore define the particular specificities that were differentially transferred across gestational age groups, a multi-level discriminant analysis (ML-PLSDA) (20,32) was used in mothers and their infants in each group across IgG levels (Figure 3C-F). Robust separation was observed across full-term mothers and infants in antibody profiles (Figure 3C). The top antibody features that drove this separation were all enriched in cord blood and included higher levels of tetanus, norovirus, influenza, polio, respiratory syncytial virus (RSV), pertussis toxin, adenovirus, pneumo, cytomegalovirus (CMV), and auto-antigen (histone H3)-specific antibodies in the full-term cords (Figure 3D). Separation was also observed in mother:cord antibody profiles in preterm infants (Figure 3E), however the antibody profiles that drove this separation were associated with higher levels of antibodies in the maternal blood (Figure 3F). These data point to antigen-specific variation in transfer rates across the mother:cord dyads. However, what governs these transfer differences selectively at different stages of gestation remain unclear but could point to opportunities to enhance transfer.
Differences in preterm and term antibody profiles diminish over time
To begin to define the specific differences, and drivers of differences in antibodies transferred to full- and preterm infants, we next compared the overall antibody profiles across the two groups of mother:infant pairs over time (Figure 4). Classification models were generated per time point, initially using a least absolute shrinkage and selection operator (LASSO) to down-select features (to avoid overfitting) followed by Orthogonalized Partial Least Squares Discriminant Analysis (OPLSDA) using the LASSO-selected features. Robust separation was observed in infant profiles in the cord (Figure 4A) that persisted but became less different over the first weeks (Figure 4D) and months of life (Figure 4G). The discriminating antibody profiles at birth were associated with higher levels of antibody features (Fc-receptor binding and levels) in the term infants (Figure 4B). Given that the models select a minimal set of antibody features that are most distinct across the groups, we next examined the co-correlates of the model selected features to gain deeper insights into the antibody profiles differences across the infant groups. Strikingly nearly all the model selected features were tethered to additional FcR binding antibody features (Figure 4C) pointing to the pivotal selective role and collaboration between FcRn and FcgRs in placental transfer at birth.
Similarly, antibody profiles after 1 week of life also demonstrated robust separation (Figure 4D), marked largely by enhanced antibody levels in the full-term infants (Figure 4E). However, a few features were enriched among preterm infants (Figure 4E). To gain further insights into the additional markers that tracked with the model-selected features, two large networks appeared around the features that marked the full-term antibody profiles, composed of high IgG titers to nearly all tested antigens, as well as largely persistent FcgR binding antibodies to EBV, mumps, polio, RSV, VZV, and rubella. Moreover, a robust cluster of pneumo-specific and mumps-specific antibody features were also noted in the full-term infants 1 week after birth, highlighting robust maintenance of these antibody-specificities to the newborn. Conversely, preterm infants exhibited a highly selective enrichment of all antibody qualities to nBosd8, a milk-allergen (Figure 4F).
Despite the normalization of antibody profiles with time across the babies (Figure 1 and 2), antibody profiles still differed across full- and preterm infants after 3 months of age (Figure 4G), marked by a very small number of features in the full-term neonates (Figure 4H). The features marked a robust persistence of pneumo-specific antibodies of multiple qualities in full-term infants as well as well as the presence of a highly persisting cluster of IgG3-antibodies to Adenovrius T5, CMV, polio, and peanuts (Figure 4I). These data point to early differences in antibodies across pre- and full-term infants, that largely normalize, but that result in rare cases in persisting vulnerabilities in preterm infants to bacterial pathogens known to cause enhanced disease in this vulnerable population. Thus overall, while higher levels of antibodies across specificities clearly distinguish term from preterm infants, this difference is lost overtime, with few, but potentially important, differences persisting between the two groups months after birth.
Evolution of transfer profiles during pregnancy
To ultimately define whether antibody transfer occurs via the same mechanism(s) in pre- and full-term infants, we next plotted transfer ratios for all specificities for each analyzed feature according to gestational age (Figure 5). A temporal transfer curve (blue solid line) was then calculated for each feature using linear regression. Specifically, a nominal multinomial logistic regression was used to calculate the probability that cord values would exceed maternal levels, where dashed black lines represent the overall temporal shift (left y axis, Figure 5 A,B). As expected, total IgG transfer ratios increased with gestational age (Figure 5A), largely for IgG1 antibodies. More moderate increases were noted in the transferred slopes of other IgG subclasses IgG2-4, consistent with a total increase overtime but no evidence of preferentially enhanced transfer, as is observed for IgG1 antibodies.
To begin to define the mechanism underlying transfer differences over time, we next examined the transfer profiles for Fc-receptor binding antibodies. A steep and linear increase in FcRn binding antibodies was observed over time (Figure 5B) as expected with increases in transferred antibodies with gestational age. Similarly, a steady increase in FcgR2B binding antibodies was observed. Conversely, a more striking logistic growth was observed for FcgR3A,B receptor-binding antibodies (Figure 5B).
To gain a clearer sense of the timing of antibody selectivity across gestational ages, the gestational age when the likelihood of the transfer ratios increased above 1 (>=1) was calculated using a logistic regression (black dashed lines in Figure 5A,B, replotted and overlaid in Figure 5C). For each feature, the gestational age when this likelihood exceeded 0.5 was calculated (Figure 5C, shown on horizontal axis). Surprisingly, all Fc-receptor binding properties cross the transfer threshold earliest in pregnancy, highlighting the critical selective influence of Fc-receptors in shaping transfer. FcgR3B, followed by FcgR2A, FcRn crossed the transfer threshold earlier than IgG1 levels. These curves were followed closely by the total IgG and other IgG subclasses, highlighting placental kinetic transfer differences across IgG-subpopulations and IgG subclasses. Despite the higher affinity of IgG3 for many Fcg-receptors, the preferential transfer of IgG1 throughout gestation argue for a collaboration between FcRn and Fcg-receptors expressed within the placenta. Collectively the data therefore argue for early collaboration between FcRn and FcgRs in driving preferential transfer of highly functional antibodies early in gestation, followed by enhanced overall antibody transfer over time.
Sequential preferential transfer of functional antibodies over gestation
The early Fc-receptor transfer profiles suggested that the placenta may select for highly functional antibodies early during gestation. To test this hypothesis, we next examined the overall levels of functional antibodies across the mother:infant pairs (Figure 6). The levels of antibody dependent cellular phagocytosis (monocyte phagocytosis, ADCP), antibody dependent neutrophil phagocytosis (ADNP), and antibody dependent NK cell activating (NK cell degranulation and cytokine secretion, ADNK) inducing antibodies were screened across pertussis, influenza and RSV. Surprisingly, despite differences in the overall levels of IgG-specific antibodies to each of these targets across the pre- and full-term cord samples (Figure 5A), antibody effector function was largely concordant across most full-and pre-term infants, with the exception of RSV-specific NK IFNg secretion (Figure 6A-E). For example, nearly equivalent antibody-dependent cellular phagocytosis, driven largely by FcgR2 (33–36), was observed across pre- and full-term cords (Figure 6A). Similarly, equivalent levels of neutrophil-phagocytosis activating antibodies were observed across pre- and full-term infants to all tested pathogens (Figure 6B). Conversely, NK cell activating antibodies increased more variably over time, with early robust transfer of Influenza-specific antibodies able to drive NK cell activation in preterm infants (Figure 6C-E). Thus, despite lower level IgG-levels early in gestation, these data suggest early phagocytic antibody transfer during gestation.
Accordingly, to define whether particular functions were transferred preferentially, transfer slope analysis was performed (Figure 6F). For phagocytic functions (ADCP and ADNP), slopes were relatively stable (Figure 6F), consistent with the early transfer of FcgR2 (Figure 5B-C), suggesting that transfer increased overtime, aimed at populating the infant early on with functional antibodies. Conversely, the regressed ADNK curves were nearly flat and even decreased for antibody mediated NK cell chemokine secretion (MIP1b) with gestational age, suggesting a potential perpetual selection, from very early gestation, aimed at populating the infant with these highly functional antibodies. Moreover, logistic regression of the probability of transfer>1 (black dashed lines in Figure 6F) suggested that antibody-mediated NK activating antibodies are likely to be preferentially transferred as early as week 24 of gestation (Figure 6G). These data suggest that functional antibodies are transferred early and consistently throughout pregnancy, to ensure in utero protection and increased probability of survival. Moreover, these data also point to a potentially preferential transfer of NK cell activating antibodies earliest in gestation, potentially linked to the enhanced maturity of neonatal NK cells in early life (37).
Selective antigen-specific antibody decay
Finally, we aimed to define the decay patterns of antigen-specific antibodies overtime following birth across both pre- and full-term infants by comparing antibody profiles across each set of timepoints (Figure 7). As expected in the fullterm infants, at birth, the presence of higher levels of particular antibody populations were enriched in the cord, due to preferential transfer across the placenta, marked by enhanced levels of Fc-receptor binding antibodies to norovirus, tetanus, S. pneumoniae, poliovirus, hepatitis A, mumps, and allergens, total pertussis antibody titer as well as ADNP-capable antibodies to rubella (Figure 7A). As expected, with time, antibody levels decayed, highlighting enriched antibody levels at early timepoints (C>W1 and W1>W12). However, the decay occurred disproportionately across antigen-specificities (Figure 7C and D). Interestingly, ADNP inducing antibodies to influenza, FcgR3A-NK cell activating antibodies to tetanus and Varicella zoster virus, FcRn binding antibodies to adenovirus T40 and norovirus, and overall levels of S. pneumoniae antibodies were preferentially lost over the first week of life (Figure 7C). Further loss of total IgGs to mumps, adenovirus T40, and Fc-receptor binding antibodies to influenza, RSV, Varicella zoster virus, EBV, and peanut allergen were observed later overtime, whereas FcRn binding bovine milk allergen slightly increased by the third month (Figure 7E). These data suggest an early preferential loss of the most functional antibodies and a potentially slower decay in overall levels of IgG in full-term infants.
Unlike full-term comparisons, higher levels of antibodies were observed in the maternal circulation compared to cord (Figure 7B), marked by higher levels of cow milk-, influenza-, measles-, tetanus- and diptheria-specific antibodies and ADNP-inducing antibodies to RSV in the maternal blood (Figure 7B). An early loss of ADNP antibodies was observed to RSV. Loss of FcgR3A-NK cell activating tetanus antibodies occurred soon after birth along with an early loss of total tetanus-, influenza-, adenovirus-, norovirus-, and human histone H3-specific antibody decay (Figure 7D). In premature infants, the next 3 months was associated with a decay in FcgR binding antibodies to influenza, Norovirus, and cow milk (Figure 7F). Additionally, total IgGs declined to norovirus over this second phase, and a loss of ADCP was also observed for RSV. Interestingly, IgG3 antibodies to HepA and pollen were lost in this later phase following birth. These data highlight a selective loss of some antibody subpopulations early (ADNP and tetanus/adeno) and a later decline in Fc-receptor binding, functional, IgG3 antibodies following several months of birth, highlighting different potential windows of vulnerability following birth across full- and pre-term infants.
Thus, collectively, our findings confirm the presence of higher transferred antibodies in full-term infants but point to placental mechanism(s) that aim to transfer functional antibodies early during pregnancy to empower the neonate to fight infection even if born prematurely. The data also point to differential kinetic vulnerabilities in pre- and full-term infants that have critical implications for the design of next generation of vaccines or therapeutics able to leverage the unique filtering features of the placenta that clearly evolves over the course of pregnancy to empower neonates with the greatest chance of survival after birth.