Primer ID
|
Primer sequences (5-3')
|
SNP type
|
Size (bp)
|
SNP position
|
PIC
|
H0
|
He
|
PHWE
|
SNP 1
|
F: ACGTTGGATGTCTCTGTCTTTTGGTGCCTG
R: ACGTTGGATGATGCTAAGGCATACCTGGTG
EXT: CAGGCCCCAAAAACTCT
|
C/T
|
139
|
89
|
0.32
|
0.40
|
0.32
|
1.000
|
SNP 2
|
F: ACGTTGGATGGTTACTGAGAGAAAGACACC
R: ACGTTGGATGCACATTACCAAATGTAGACTG
EXT: AGAAAGACACCTCACAC
|
G/A
|
139
|
83
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 3
|
F: ACGTTGGATGGGAATACACCTTATGTGGAG
R: ACGTTGGATGAAAAGTCAGTAAATTTCGC
EXT: GCTGAGCTGTGGATATA
|
C/T
|
139
|
89
|
0.50
|
0.20
|
0.50
|
0.365
|
SNP 4
|
F: ACGTTGGATGGCACTCTCCTACATCTGTTT
R: ACGTTGGATGTAACGTCGTTACCGACTGAG
EXT: tGGTAGGCAAAAACTGTC
|
T/A
|
139
|
87
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 5
|
F: ACGTTGGATGATTGGTGGGAGTGTTACTGC
R: ACGTTGGATGGGCCTTTCTGGTTTTCCAAC
EXT: TTGACCCAGATAACCCTTC
|
G/A
|
140
|
81
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 6
|
F: ACGTTGGATGTCTGCCCAAACAAAGGACAC
R: ACGTTGGATGTAAGGTTTTCCCTGAGGTCC
EXT: ACACCCACCTAGATAGATT
|
A/G
|
139
|
85
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 7
|
F: ACGTTGGATGCTTTTCTACTCTCCTGTCCC
R: ACGTTGGATGTAGCCAGACTTCATAACCCC
EXT: CTCCTGTCCCCATCCTGTCC
|
C/T
|
139
|
83
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 8
|
F: ACGTTGGATGAGTGATAATGATGGTGGTGG
R: ACGTTGGATGTTACTGTTGGGAACAGCGAG
EXT: agGATGGTGGTGGTCCTAA
|
T/C
|
139
|
84
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 9
|
F: ACGTTGGATGGAAAATCTAAAAAGTACCG
R: ACGTTGGATGGTGAAGCACCAAAAAGTCCC
EXT: taTAAAAAGTACCGAATCGC
|
A/G
|
139
|
81
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 10
|
F: ACGTTGGATGGATGATTGGCTACCTCCTTC
R: ACGTTGGATGCCTCATCCTCACATTGACAG
EXT: cccaCTTCACCCAAGGGATTT
|
C/G
|
139
|
81
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 11
|
F: ACGTTGGATGTGACCAAGGAGGCATTTGAG
R: ACGTTGGATGCATTCCGTATGCTCTTCTCG
EXT: GGTGTCCCTCAACATAAAAGC
|
T/C
|
140
|
86
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 12
|
F: ACGTTGGATGTCACACCAATCGTGAACGTC
R: ACGTTGGATGCTGTTCCGCTGAAATTTCCG
EXT: tcCGTCAAACAGCTTAAAGAA
|
G/A
|
139
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 13
|
F: ACGTTGGATGGGTCAGTAGGTGTTCCTTTC
R: ACGTTGGATGCCTGTACAAGACTGAAATGG
EXT: ccccCTCACACCTTTGACTCGT
|
T/C
|
139
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 14
|
F: ACGTTGGATGTGCGTCGCTCTAAGTTGTTG
R: ACGTTGGATGCCCTCACCTCAAGTAACGAC
EXT: aatcGGATTCTAAAGTTGACGC
|
A/C
|
139
|
88
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 15
|
F: ACGTTGGATGTGGTGCGGTCTGTGTGTATG
R: ACGTTGGATGTATGAACACCACCCTGAACC
EXT: gggtGAAGTCCCATAGTATGGT
|
C/T
|
140
|
84
|
0.42
|
0.20
|
0.42
|
0.333
|
SNP 16
|
F: ACGTTGGATGGGACTTTATCCTCGCTCTTG
R: ACGTTGGATGAAATGTGCAGCCAGGGAATC
EXT: TCTTGCTTCCTCTAGTTTACTAA
|
G/A
|
139
|
91
|
0.32
|
0.40
|
0.32
|
1.000
|
SNP 17
|
F: ACGTTGGATGAGGACACAGATGACGATAAC
R: ACGTTGGATGGTTGGGTGTATACTACCCTC
EXT: gCGGAGGATTTTCCTTCTGAAAT
|
T/C
|
140
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 18
|
F: ACGTTGGATGAGGTGTGACGTTGAAGTGAC
R: ACGTTGGATGCAAGCAGTGAGCTGAGATAG
EXT: aacctTCGCTCCGAAAACTCTCTA
|
G/A
|
140
|
86
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 19
|
F: ACGTTGGATGGCTTGGCGTATTCAGTATCC
R: ACGTTGGATGCTTGTCGTAATACCACAGTC
EXT: gccgCGCCTGCCTCTTTGCTGTCC
|
G/A
|
139
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 20
|
F: ACGTTGGATGAATTACAGTCGCAGGGACTC
R: ACGTTGGATGGGGTCTTCAACAGACCTTTC
EXT: taagtGACTCAAAAACCTGAGACT
|
T/C
|
139
|
86
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 21
|
F: ACGTTGGATGGGCACATCCACTCATAAAAG
R: ACGTTGGATGTGCACCCAATTTTTAGCCAC
EXT: agtgGCCAAAAATGGCTAAAGAAC
|
A/G
|
140
|
87
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 22
|
F: ACGTTGGATGAGCCGGCTTATAGACCAATC
R: ACGTTGGATGGTCACAGCTTGGAAATGACG
EXT: tcttcTAGACCAATCGATGCAGCAC
|
C/T
|
140
|
86
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 23
|
F: ACGTTGGATGGGGCTTAAGATGAATAAATC
R: ACGTTGGATGTGTTCTAAATCCTTTCCGTC
EXT: ggTGATAATGTACAATGACAAAGTA
|
T/G
|
139
|
86
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 24
|
F: ACGTTGGATGACATATCTTCCGTCTTCTGC
R: ACGTTGGATGCTTGAAAAAAACAGGAACGC
EXT: TTGAGTAGATATCAATTCTAACACTG
|
C/T
|
139
|
85
|
0.42
|
0.60
|
0.42
|
1.000
|
SNP 25
|
F: ACGTTGGATGAGAAACAAATAACAACTGC
R: ACGTTGGATGCCAACACGACGTGTAACAAC
EXT: caaaAAATAACAACTGCAAAGCAAAA
|
A/G
|
140
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 26
|
F: ACGTTGGATGCGCGTCATCCCTATTGATTC
R: ACGTTGGATGGAGTTTGTGTGTGATGTCAG
EXT: cccggCCTTTTTATATACCCCCAAAAC
|
T/C
|
140
|
87
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 27
|
F: ACGTTGGATGTTCCTCAGGTCCAGAAATAC
R: ACGTTGGATGCTAGGACAACATATAATTC
EXT: aaaacAAAGAAATGAAATGTTTGGAG
|
G/A
|
139
|
83
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 28
|
F: ACGTTGGATGCCTAGACCTAGATTCACCTG
R: ACGTTGGATGAACCTCCTAAGTACAAGCGG
EXT: aactcATACTCATACCACGTAGCTATA
|
T/G
|
139
|
84
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 29
|
F: ACGTTGGATGTCCACAGATTTACACTCGCC
R: ACGTTGGATGCTATCAGTTATTGCTTGTCG
EXT: TTGCTGTCCGTCGTCTA
|
G/C
|
139
|
88
|
0.32
|
0.40
|
0.32
|
1.000
|
SNP 30
|
F: ACGTTGGATGAAAGCTGCCGAAGTAGTTGG
R: ACGTTGGATGGCCTACTATATCTGCCTTCG
EXT: TTAAGACAGACGGTGGA
|
C/T
|
139
|
89
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 31
|
F: ACGTTGGATGAAATCGTCCCTCGGCTAATC
R: ACGTTGGATGGGTATATTGGTACAGAAAC
EXT: tTTGTGGTCCCCAAATTA
|
C/A
|
140
|
81
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 32
|
F: ACGTTGGATGCGAGCCTATCCTTAAACACC
R: ACGTTGGATGCTGATTTCACTCCTGTCTATC
EXT: TGGAGGAATTTAGGGGTA
|
T/G
|
139
|
87
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 33
|
F: ACGTTGGATGTTTGTGAATCGTGCCGATTG
R: ACGTTGGATGTTCAAGATGTACTCCTCCTT
EXT: GTGCCGATTGGATTGCTAC
|
C/T
|
139
|
89
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 34
|
F: ACGTTGGATGGGTGTCTTCTTGGGCATTTG
R: ACGTTGGATGCAGCCATATCTAGACACCAC
EXT: GGAATGTTAAGTGGCTTTC
|
C/T
|
139
|
87
|
0.48
|
0.40
|
0.48
|
1.000
|
SNP 35
|
F: ACGTTGGATGTGGTTTAAACACCACCACCC
R: ACGTTGGATGAATACCTTGGATGTCTGGGC
EXT: CAACAAATCCCAAAGACAAC
|
A/G
|
140
|
81
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 36
|
F: ACGTTGGATGAGCCTATCCAGAAATTGCTC
R: ACGTTGGATGCCTAAATAAATATCGCATC
EXT: ctGTCCTTTCTTTGCAAGAT
|
A/G
|
140
|
86
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 37
|
F: ACGTTGGATGAGCGTGTACCCTTGTGTATG
R: ACGTTGGATGACCTCTCCTTTTATGGTAGC
EXT: aaaGGCGGGCAGATTGTGCG
|
A/G
|
139
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 38
|
F: ACGTTGGATGTTCCCATTAGATTCCCCAGG
R: ACGTTGGATGCTAAAGGCCTTTACCTAAACC
EXT: Cggaggggttaggacttgat
|
A/G
|
140
|
89
|
0.42
|
0.60
|
0.42
|
1.000
|
SNP 39
|
F: ACGTTGGATGCTTTCATGTTTCTTCTCTCG
R: ACGTTGGATGCGAACAAGAGCGATACCTAC
EXT: TTTCTTCTCTCGTTAATTAGTT
|
C/T
|
140
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 40
|
F: ACGTTGGATGGGTTCACAAGCTAAGTAGGG
R: ACGTTGGATGCTGTAAGCACTTTTTTTCCG
EXT: cccGGGGTACTCTCCTCAAATA
|
A/G
|
139
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 41
|
F: ACGTTGGATGCTACAGAGGACTACCACTTG
R: ACGTTGGATGTATGGCTAACGAGTACGAGG
EXT: gAACGATTCTTAGTTAAAACGC
|
A/G
|
139
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 42
|
F: ACGTTGGATGTATGAACACCACCCTGAACC
R: ACGTTGGATGTGGTGCGGTCTGTGTGTATG
EXT: gaCGGTAACGGAAACTGAAAAT
|
A/G
|
140
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 43
|
F: ACGTTGGATGCTACTTTCAAACATAGAAGC
R: ACGTTGGATGATACACTTATATCTAAATATTA
EXT: ttgCAAACATAGAAGCACTGAAT
|
G/A
|
140
|
81
|
0.32
|
0.40
|
0.32
|
1.000
|
SNP 44
|
F: ACGTTGGATGGGTAACATTATCCCGAACGA
R: ACGTTGGATGCAACGTTTTTGTGAAGGCTG
EXT: cggggATTGTAATCCTGGACGGG
|
G/A
|
139
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 45
|
F: ACGTTGGATGCCTCCATGTGTTATTCTATCC
R: ACGTTGGATGACATGGGTACTAGCTTAGAG
EXT: caTCTAAACTTTCTACTCCGTATT
|
A/G
|
140
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 46
|
F: ACGTTGGATGCCGAGTATATGACCCACATC
R: ACGTTGGATGGTTGCAAATCATACGACGAC
EXT: cccacGACCCACATCAGTGAAAAT
|
C/T
|
139
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 47
|
F: ACGTTGGATGGCCAGAAATAGTGAGATAGC
R: ACGTTGGATGCTGCATCGTATTCGTTCTGG
EXT: cccGTGAGATAGCTTTGGAAAATA
|
T/A
|
140
|
87
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 48
|
F: ACGTTGGATGTTTCATGTCCACAGCTACCC
R: ACGTTGGATGGTGATTAAACTTTACCTCGC
EXT: ccccaCTGGAACAACAATAGTTACT
|
A/C
|
140
|
86
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 49
|
F: ACGTTGGATGGTTGCCACGTTAAAATAGC
R: ACGTTGGATGACTAAGGTTTTTAAGTTGGC
EXT: cccctTTAAAATAGCTAGCTGGTTG
|
G/A
|
139
|
84
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 50
|
F: ACGTTGGATGACGGTCTTCTTCGGAAAAGG
R: ACGTTGGATGCTATATGAAGTGGCTGTGTG
EXT: gggacGGGTTTACATACGGAAAATA
|
C/A
|
140
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 51
|
F: ACGTTGGATGGCCTCTGTTGTGTGTTAAAG
R: ACGTTGGATGAATCCGGAAGAAGTCCAAAG
EXT: tcGTTAAAGTTACCGATAGTTTTTTT
|
A/T
|
140
|
81
|
0.50
|
0.60
|
0.50
|
1.000
|
SNP 52
|
F: ACGTTGGATGGGGCTTAAGATGAATAAATC
R: ACGTTGGATGCCGTCAATTTTAATGGCTTGG
EXT: aagCAATGATAATGTACAATGACAAA
|
C/A
|
139
|
89
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 53
|
F: ACGTTGGATGCTTATTAACCTTTCCGACAC
R: ACGTTGGATGCGTCGTCTGATTGCTCACTT
EXT: cccACACTTTAATAAACATTTCAAACA
|
C/T
|
139
|
80
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 54
|
F: ACGTTGGATGCCATAACATGCAAGGAAAAC
R: ACGTTGGATGCTATCCCCATTATTATTACCACC
EXT: cttcAAACATAATACTGACACTACTTC
|
G/A
|
140
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 55
|
F: ACGTTGGATGATTTTATGGCGCCAAGCCAG
R: ACGTTGGATGGAACCAACACGCATATTGATG
EXT: CCAAGCCAGTAACATCA
|
A/T
|
140
|
83
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 56
|
F: ACGTTGGATGGTGAAGCACCAAAAAGTCCC
R: ACGTTGGATGGAAAATCTAAAAAGTACCG
EXT: AAAGTAGGCCGGTAACT
|
C/T
|
139
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 57
|
F: ACGTTGGATGAATACACAAGGCCATAGCCC
R: ACGTTGGATGGTGTTACTACACCAAGGCAG
EXT: aAAGAGAGAAAAGTCCCC
|
C/A
|
139
|
81
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 58
|
F: ACGTTGGATGTTTGTCAGATGGAGGGTCAG
R: ACGTTGGATGCTCAAAATCAAGGAAAATTG
EXT: cAGGGTCAGTTGGTTGGT
|
G/A
|
140
|
83
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 59
|
F: ACGTTGGATGGATTTCGTAATTGTGGTCCC
R: ACGTTGGATGCTACTGCTAACAATAACATGG
EXT: ccATTGTGGTCCCCAAATC
|
T/A
|
140
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 60
|
F: ACGTTGGATGAAAAAAAAAATTGGGTGGC
R: ACGTTGGATGGAGGTAAAATCTGGTCGAGG
EXT: AAAATTGGGTGGCATGCTT
|
A/G
|
139
|
84
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 61
|
F: ACGTTGGATGGGAGGGCGTGTGATGAAAAG
R: ACGTTGGATGTTCTTCTTCTCCATGCATTC
EXT: aaGGTTGTCATTGCTGGTG
|
G/A
|
139
|
89
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 62
|
F: ACGTTGGATGCGATTCATACCCAACTGTGC
R: ACGTTGGATGGAGAGACTGATATCACAAT
EXT: acGTGCTAGAATTTTACGCC
|
C/G
|
140
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 63
|
F: ACGTTGGATGTTCCTCAGGTCCAGAAATAC
R: ACGTTGGATGCTAGGACAACATATAATTC
EXT: tTGAAATGTTTGGAGGAAAG
|
C/T
|
139
|
88
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 64
|
F: ACGTTGGATGGGAAACTCGATTTTTCAGGG
R: ACGTTGGATGCTTCCCGAATATAGACTTTGC
EXT: acccTTCTGCTTCGCGTTTTT
|
T/C
|
140
|
87
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 65
|
F: ACGTTGGATGACGTTTCGGCCGTTGTAATC
R: ACGTTGGATGAAGGTTCGGTTCGTTACTCC
EXT: gggaTTGTAATCTACGGCCTT
|
G/A
|
140
|
83
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 66
|
F: ACGTTGGATGGGAATAGGGTATGCATCCAA
R: ACGTTGGATGAACGACAACCACAAGAGACG
EXT: gtGGTATGCATCCAAATTAGT
|
A/G
|
139
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 67
|
F: ACGTTGGATGGCGATTATGTTAAGCGGTTC
R: ACGTTGGATGGCACTTTTTTTACCGGGTTA
EXT: gctGGATAAACCCTCCTCAAAT
|
A/T
|
139
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 68
|
F: ACGTTGGATGGAATTTTTGTGACCAAAATC
R: ACGTTGGATGTATCGCTTTCTACTTGCTG
EXT: atcTTTACATGGTTGGAAAGAG
|
G/T
|
139
|
81
|
0.50
|
0.20
|
0.50
|
0.365
|
SNP 69
|
F: ACGTTGGATGTCCCAACCTAAAACGTTCTC
R: ACGTTGGATGGTTAGCGGCAACGTCACAAC
EXT: cccccTTAACGGTCGTTTTCATC
|
G/A
|
140
|
81
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 70
|
F: ACGTTGGATGCCCAAAACCCCAAAGACTTC
R: ACGTTGGATGATGGGACTCACTCCTTCTTG
EXT: gtccaAAAGACTTCCGGGTTCCG
|
G/A
|
140
|
84
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 71
|
F: ACGTTGGATGTGGTGCGGTCTGTGTGTATG
R: ACGTTGGATGTATGAACACCACCCTGAACC
EXT: aaggaAAGTCCCATAGTATGGTG
|
C/A
|
140
|
83
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 72
|
F: ACGTTGGATGCCGGTGTCACGTTATTCAAG
R: ACGTTGGATGATGAGTGGCTTCAGAAGACC
EXT: aacTCAAGTTTTTTCTCTTACTCA
|
C/T
|
139
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 73
|
F: ACGTTGGATGTGCACCCAATTTTTAGCCAC
R: ACGTTGGATGGGCACATCCACTCATAAAAG
EXT: cCAATTTATTGTCTTTTTCTGGTG
|
A/G
|
140
|
85
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 74
|
F: ACGTTGGATGTGACCAAGGAGGCATTTGAG
R: ACGTTGGATGCATTCCGTATGCTCTTCTCG
EXT: ggggtTGGTGTCCCTCAACATAAA
|
A/T
|
140
|
83
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 75
|
F: ACGTTGGATGGGGTCTTCAACAGACCTTTC
R: ACGTTGGATGAATTACAGTCGCAGGGACTC
EXT: caCTTTCATTAATCAGTCTGAAATT
|
C/T
|
139
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 76
|
F: ACGTTGGATGACTGTCCCGAACTATGTTGC
R: ACGTTGGATGTCGCCAGAGTTGGCTAAAAG
EXT: aactAACTATGTTGCCAAATTTTAC
|
C/T
|
140
|
85
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 77
|
F: ACGTTGGATGTCCCTTTACTGGATTTCCTC
R: ACGTTGGATGCGTGTAATCTGCAGAAAATG
EXT: cGTTTGGGTTGTAATACGTATAGAA
|
T/G
|
140
|
87
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 78
|
F: ACGTTGGATGAGTAGATGCCACGTCTATGC
R: ACGTTGGATGGAGTCTCAACAAAATTTGAT
EXT: agattCCACGTCTATGCGGTGTTTTT
|
A/G
|
140
|
83
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 79
|
F: ACGTTGGATGTCCGAGAGGTTGAGGATAAG
R: ACGTTGGATGTCAAAAGAAACTCGACTCCC
EXT: agaagATGTTCTTCCATTTACTGTGT
|
T/C
|
140
|
82
|
0.48
|
0.80
|
0.48
|
0.429
|
SNP 80
|
F: ACGTTGGATGGATTGCCATGGTTTACTCAG
R: ACGTTGGATGCCTCTGTAACACCAATTGAC
EXT: ctcTCAATCACAAATGCTTTTATTTAT
|
A/G
|
140
|
83
|
0.32
|
0.40
|
0.32
|
1.000
|
SNP 81
|
F: ACGTTGGATGTATTGCTGGGTGCGTAATGG
R: ACGTTGGATGATGACAGTCAGACTAAATCG
EXT: cccAATGGTTTTTACTATTTCTTACAT
|
G/A
|
139
|
86
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 82
|
F: ACGTTGGATGGTAGACATCTCCGTTTTTCC
R: ACGTTGGATGGATTTCGACACTTTTTCCCG
EXT: TCCGTTTTTCCGTCAAC
|
G/A
|
139
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 83
|
F: ACGTTGGATGGCTATGTTGGTATTGCTCCG
R: ACGTTGGATGCGACCACGGAAAGTGTTATG
EXT: TTGCTCCGTTCACAATA
|
T/C
|
139
|
87
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 84
|
F: ACGTTGGATGAAGCCAGAGGAAGAGGAAAG
R: ACGTTGGATGTTACAAACAAGGCTGCAAGG
EXT: GAACATAAGGGCAGCTA
|
C/T
|
140
|
87
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 85
|
F: ACGTTGGATGATTTTATGGCGCCAAGCCAG
R: ACGTTGGATGGAACCAACACGCATATTGATG
EXT: GCGCCAAGCCAGTAACAT
|
A/G
|
140
|
85
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 86
|
F: ACGTTGGATGCCTCATCCTCACATTGACAG
R: ACGTTGGATGGATGATTGGCTACCTCCTTC
EXT: tGGTTAGAGTTGGTGCCG
|
T/C
|
139
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 87
|
F: ACGTTGGATGGCCAGGCTATTCCTGCAAAT
R: ACGTTGGATGAGACTTACAGACTGGTACCC
EXT: CTCAATTTCGTCTTTCCAT
|
G/T
|
140
|
84
|
0.48
|
0.00
|
0.48
|
0.051
|
SNP 88
|
F: ACGTTGGATGAATTACAGTCGCAGGGACTC
R: ACGTTGGATGGGGTCTTCAACAGACCTTTC
EXT: ACTCAAAAACCTGAGACTA
|
A/G
|
139
|
85
|
0.32
|
0.40
|
0.32
|
1.000
|
SNP 89
|
F: ACGTTGGATGACATTCTGGTCTGAGCTCTG
R: ACGTTGGATGGCTACCATGTGGTTAAGAAC
EXT: CAGGAAAAATTCCGCCCATC
|
T/C
|
139
|
87
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 90
|
F: ACGTTGGATGCTATCATCCCACAGAGCATC
R: ACGTTGGATGAGAAAAAATGCCCCAAAAC
EXT: TGGAAGGCAGTGACGTTCTC
|
T/C
|
140
|
91
|
0.32
|
0.40
|
0.32
|
1.000
|
SNP 91
|
F: ACGTTGGATGCATATAATAGCTTTGAAATC
R: ACGTTGGATGTACAACAACATAGGTCTGGG
EXT: cTTTACATTTTAGGCCATTCA
|
T/C
|
139
|
85
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 92
|
F: ACGTTGGATGAAGCTCCTCCCTTGCTTCC
R: ACGTTGGATGCATCTATCGTTGGTTCCTCC
EXT: aacaAGGACCCTTTTTAGGGA
|
A/C
|
140
|
87
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 93
|
F: ACGTTGGATGGAGCGAACAAGTCGAATCTG
R: ACGTTGGATGTGTTCTTTTACCTTCGTTG
EXT: gaagGAGATATCTGGTAGCCG
|
A/T
|
139
|
83
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 94
|
F: ACGTTGGATGCGTAAAGAGAAGTCACAGGG
R: ACGTTGGATGACGTCACTTCAACGTCACAC
EXT: cAAAGCTTTAAGCTTCAACAAC
|
C/T
|
139
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 95
|
F: ACGTTGGATGACCCTTTTCCGAAGAAGACC
R: ACGTTGGATGCGGAACCTTGGAGGAAGAAT
EXT: GACCGTAAAACGTCGAAAATAT
|
T/C
|
139
|
83
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 96
|
F: ACGTTGGATGTTGGCGAACAATAGCCAACC
R: ACGTTGGATGATAGCCCGTAACACTTCGTC
EXT: tctccCAATAGCCAACCCAGACA
|
A/G
|
140
|
89
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 97
|
F: ACGTTGGATGGGAAAGTATTCGTGGCCTTC
R: ACGTTGGATGACCCTGTCCTTTCGATTTTG
EXT: GTAAATACTTTTTGCTATAAGCG
|
T/A
|
139
|
83
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 98
|
F: ACGTTGGATGCCATAACATGCAAGGAAAAC
R: ACGTTGGATGCTATCCCCATTATTATTACCACC
EXT: ttttcACTGACACTACTTCGAATA
|
C/T
|
140
|
85
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 99
|
F: ACGTTGGATGGCCTCAAGATGAATAAATC
R: ACGTTGGATGTGTTCTAAATCCTTTCCGTC
EXT: TGATAATGTACAATGACAAAGTAA
|
G/A
|
139
|
88
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 100
|
F: ACGTTGGATGTCTCTCGTTTTATAAGCAG
R: ACGTTGGATGAACACCAAAACTCCCTCCTC
EXT: gaAGAATGATACTGGTTTTCAAAA
|
T/C
|
140
|
89
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 101
|
F: ACGTTGGATGATTTGGCAGAGCAGTCGAAC
R: ACGTTGGATGATGGTACATACCACACCACG
EXT: ctcACACTACTCTAATTTTTTCAGG
|
T/G
|
139
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 102
|
F: ACGTTGGATGCAGTGAGCGATATTACTGGC
R: ACGTTGGATGGACCTACTTTGACATGTGAC
EXT: gATAAGGAAGTATTACGATATGTAG
|
G/A
|
140
|
88
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 103
|
F: ACGTTGGATGCCGCAGTAATTTCAACCCAC
R: ACGTTGGATGCCATGTTGTTTTCCTTAAT
EXT: ggtcaACAAAAATTATAACCACCGCC
|
C/A
|
139
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 104
|
F: ACGTTGGATGAGGCTTCCAAAAAGAGAGGG
R: ACGTTGGATGCAAGCGCTATTTACAGAGAG
EXT: cccgaGTGACAACACTGGTTCAAATG
|
C/T
|
140
|
84
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 105
|
F: ACGTTGGATGAGCAGATGTGTTGTGCAATC
R: ACGTTGGATGATGGTGAAAGCCCATTTATC
EXT: gATTATTGAGTAACCAATAGAAATTC
|
T/C
|
139
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 106
|
F: ACGTTGGATGCAAGCTCGCAAATGATGATG
R: ACGTTGGATGTATTTTTGCCCGTGGCTTTG
EXT: agattATGATTCAGAGTGGAAAGAAA
|
A/T
|
140
|
86
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 107
|
F: ACGTTGGATGAATACACAAGGCCATAGCCC
R: ACGTTGGATGGTGTTACTACACCAAGGCAG
EXT: AGAGAGAAAAGTCCCCC
|
C/A
|
139
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 108
|
F: ACGTTGGATGATTCTTGCCGCGAGAAAGTG
R: ACGTTGGATGTTTCCACTTTTAGGCGCGTC
EXT: GTGAAGACCTCGCTGAG
|
T/A
|
140
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 109
|
F: ACGTTGGATGCAAGCCAGGACCCTTTTTAG
R: ACGTTGGATGCACCTCGCCATCTATCGTTG
EXT: cCCCTTTTTAGGGAACCC
|
T/G
|
140
|
91
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 110
|
F: ACGTTGGATGCAACGTTTTTGTGAAGGCTG
R: ACGTTGGATGGGTAACATTATCCCGAACGA
EXT: ccCTATCAGGTCCCCGTCC
|
T/A
|
139
|
83
|
0.42
|
0.06
|
0.42
|
1.000
|
SNP 111
|
F: ACGTTGGATGGAGCAATTAATAAGGCGAACC
R: ACGTTGGATGGCCAAAATGCGTATTCAGAG
EXT: GCGAACCTAATCTCTAAGA
|
T/C
|
139
|
83
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 112
|
F: ACGTTGGATGCAGACGATTAACTGCCGAAG
R: ACGTTGGATGCCATTGTCTGCCTTAATGGG
EXT: GAAGTAGTTGGGATTTACC
|
A/G
|
140
|
88
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 113
|
F: ACGTTGGATGTACGTAAACGGTGTTGGCTC
R: ACGTTGGATGAGATGATAGACTGTCCAAAG
EXT: cgTCACTACTCTGCTGTATC
|
T/A
|
139
|
88
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 114
|
F: ACGTTGGATGAAATGTGCAGCCAGGGAATC
R: ACGTTGGATGGGACTTTATCCTCGCTCTTG
EXT: tGGGAATCGAACTTTTTGAA
|
A/G
|
139
|
82
|
0.32
|
0.40
|
0.32
|
1.000
|
SNP 115
|
F: ACGTTGGATGGCAAAGCTGTAGCCGACAAA
R: ACGTTGGATGTTGTCCTGTGTACTGTGGTC
EXT: GGCTACACATCATTATTTGGC
|
G/A
|
140
|
91
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 116
|
F: ACGTTGGATGAGACAACCGTACTTCAGAGC
R: ACGTTGGATGCACCCACGGGGATACATTAA
EXT: gAGAGCATAATGAATGAACAG
|
A/G
|
140
|
87
|
0.50
|
0.60
|
0.50
|
1.000
|
SNP 117
|
F: ACGTTGGATGTTAGCCAATCCGAGTTGACC
R: ACGTTGGATGCCCCACTCCCCGATTTTTAC
EXT: tccttGGAAACCCCCACCTAAC
|
A/G
|
139
|
80
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 118
|
F: ACGTTGGATGGTGGCCAGTTTCCAGAGAAT
R: ACGTTGGATGTCGTGACCACACACAGTAAC
EXT: ctcacCTGGAAGGCACTTTTGC
|
C/T
|
139
|
87
|
0.32
|
0.40
|
0.32
|
1.000
|
SNP 119
|
F: ACGTTGGATGGAGAAGTGTGCACGTAGAAG
R: ACGTTGGATGCCTATTCTCTCTAACTTTCG
EXT: AGTAGTATCGTAGCTAAACTTG
|
A/G
|
140
|
84
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 120
|
F: ACGTTGGATGGATTAACTTCCGAATACTC
R: ACGTTGGATGCACACCATATTTGGAGATAC
EXT: CTTCCGAATACTCATATATCCAC
|
A/C
|
139
|
86
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 121
|
F: ACGTTGGATGCTGTTTCGGTAAGTCTATTC
R: ACGTTGGATGTCCAGGACATAGTTAGTAGC
EXT: ATTCTTATTCTTCTTATGTGACA
|
G/T
|
139
|
85
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 122
|
F: ACGTTGGATGGGGCTTAAGATGAATAAATC
R: ACGTTGGATGCCGTCAATTTTAATGGCTTG
EXT: AATGATAATGTACAATGACAAAG
|
A/T
|
139
|
88
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 123
|
F: ACGTTGGATGTCTGTAATCCGGCAGCAAAG
R: ACGTTGGATGAGAAGAAAGACGAGGGTAAC
EXT: tccGCAAAGTTAATAAATTGCTCC
|
C/A
|
140
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 124
|
F: ACGTTGGATGATCAATGTAATAAAAGTGTG
R: ACGTTGGATGCTGATGAATGTATTCTTTTT
EXT: cAATAAAAAAAAACACAACAATGT
|
G/T
|
140
|
85
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 125
|
F: ACGTTGGATGCCAGTTTTTCACTGTCCATC
R: ACGTTGGATGCTGCTCCAATTATCAATCGAC
EXT: ggaggTGATTCAGGCGGAATAACT
|
G/T
|
139
|
88
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 126
|
F: ACGTTGGATGCACAAGTACAAAACACAACC
R: ACGTTGGATGATTCTATTAGGCACTAAAC
EXT: acATGACAATGTTTATAAATTCTCC
|
C/T
|
140
|
86
|
0.32
|
0.00
|
0.32
|
0.111
|
SNP 127
|
F: ACGTTGGATGGTGGGTCATCAGAGCTCTAA
R: ACGTTGGATGCCATAAGACCTCCTTGGAAC
EXT: GGGATTGTGAATTATTTATGTATCT
|
C/A
|
139
|
88
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 128
|
F: ACGTTGGATGGACTGGTATCATACTTCTCTC
R: ACGTTGGATGCCTTGTCCGTCCTAGTTATT
EXT: cgACTTCTCTCTAAAGACAAATTTTA
|
C/A
|
140
|
83
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 129
|
F: ACGTTGGATGTAGCAAGCAGATGTGTTGTG
R: ACGTTGGATGTGCTGAAAGACCATTTATC
EXT: acTTATTGAGTAACCAATAGAAATTC
|
T/G
|
139
|
9
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 130
|
F: ACGTTGGATGGGGTTTGAATGAAAGCTGAC
R: ACGTTGGATGTTTCCCGTTGTCAGTTAGGC
EXT: gggTGAAAGCTGACGAAATATATAAT
|
A/G
|
139
|
82
|
0.18
|
0.20
|
0.18
|
1.000
|
SNP 131
|
F: ACGTTGGATGCAAGTTTTGGACACTTGTACG
R: ACGTTGGATGACCAAAACCGTGATTGGTCG
EXT: cccccACACTTGTACGAAAAAACATCT
|
T/A
|
139
|
91
|
0.32
|
0.00
|
0.32
|
0.111
|