Cell culture. The murine macrophage cell line, RAW264.7 (Riken Bioresource Research Center, Tsukuba, Japan), was incubated in Dulbecco’s modified Eagle medium (DMEM, Wako Pure Chemical Industries, Osaka, Japan) supplemented with 10% heat-inactivated fetal bovine serum (FBS, Thermo Fisher Scientific, Waltham, MA, USA) and 10% penicillin/streptomycin (Wako Pure Chemical Industries). Human umbilical vein endothelial cells (HUVECs, Promo Cell, Heidelberg, Germany) were cultured in Endothelial Basal Medium-2 (EBM2, Lonza) supplemented with Endothelial Cell Growth Medium-2 SingleQuots Kit (EGM-2, Lonza). All cells were cultured in standard conditions (37°C, 5% CO2) and the culture medium was replaced every 3 days.
Animal experiments and tissue preparation. All animal experiments were carried out in accordance with the approved guidelines of the institutional committees for animal experiments at Tokyo Medical and Dental University (TMDU) and in compliance with the ARRIVE guidelines. All experimental protocols were approved by Institutional Animal Care and Use Committee of the TMDU (Reference number A2021-251A). Male Sprague Dawley rats (8 weeks old, n = 30) and pregnant C57BL/6J mice (n = 4) were obtained from CLEA Japan (Tokyo, Japan) and housed in standard conditions (22°C, 55% relative humidity, artificial illumination). To generate the pulpal injury model, rats were anesthetized with an intraperitoneal injection of ketamine hydrochloride (50 mg/kg, Ketalar, Sankyo, Tokyo, Japan) and xylazine hydrochloride (20 mg/kg, Selactar, Bayer Yakuhin, Osaka, Japan). Cavities without pulp exposure were prepared on the mesial surface of the upper first molars of both sides with #1/2 round burs using a dental handpiece motor under a stereoscopic microscope (Dental Microscope Z, Mani, Tochigi, Japan). The thickness of remaining dentin was approximately 200 µm. On days 1, 3, 5, and 7 after cavity preparation, the rats were killed under carbon dioxide euthanasia. The maxilla was collected and fixed with 4% paraformaldehyde overnight. The samples were demineralized with 17% EDTA for 3 weeks and embedded in an embedding medium (Tissue-Tek OCT compound, Sakura Finetek, Torrance, CA, USA) for frozen sections. To obtain embryos, the pregnant mice were killed under carbon dioxide euthanasia. The heads of fetal mice were harvested at the desired developmental stages (E13, E15, and E18) and immediately embedded in OCT compound to make fresh frozen samples. Cryostat sections (10 µm) from rat maxilla and mouse embryos were prepared for histological evaluation.
Immunohistochemistry and immunocytochemistry. Staining was performed as described previously51. Briefly, for immunofluorescence staining of frozen samples, sections were incubated with primary antibodies overnight at 4°C. The antibodies used were anti-LYVE-1 (11-036, rabbit monoclonal, AngioBio, San Diego, CA, USA), anti-CD68 (MCA341GA, mouse monoclonal, Bio-Rad, Kidlington, UK), anti-CD163 (MCA342GA, mouse monoclonal, Bio-Rad), anti-MCH-II (MCA46R, mouse monoclonal, Bio-Rad), and anti-CD146 (MAB3250, mouse monoclonal, R&D Systems, MN, USA). This was followed by 1-h incubation with Alexa Fluor 488-conjugated anti-mouse IgG (ab150065, Abcam, Cambridge, UK) and/or Alexa Fluor 568-conjugated anti-rabbit IgG (ab175700, Abcam). Finally, nuclei were visualized by coverslipping with mounting media containing 4′,6′-diamidino-2-phenylindole nuclear stain (DAPI, Aqueous, Flouroshield, Abcam).
For cultured cells, 35-mm imaging dishes with a polymer coverslip bottom (Asahi Techno Glass, Shizuoka, Japan) were used for cell seeding. The cells were fixed with 4% paraformaldehyde and immunofluorescence staining was performed as described above. Histological analyses were performed using a confocal laser scanning microscope (Leica TCS-SP8, Leica Microsystems, Wetzlar, Germany) and LAS AF confocal software (Version 1.8.3, Leica Microsystems).
For immunoperoxidase staining, sections were fixed with 4% paraformaldehyde for 10 min at 4°C. Endogenous peroxidase activity was blocked by incubating the sections in 0.3% H2O2 solution in PBS at room temperature for 10 min. The sections were incubated with an anti-LYVE-1 antibody (11-036, AngioBio) overnight at 4°C, followed by 30-min incubation with biotinylated anti-rabbit IgG antibody (BA-1000, Vector Laboratories, Burlingame, CA, USA) and the avidin-biotin-peroxidase complex (R.T.U. Vectastain Universal ABC Kit, PK-7200, Vector Laboratories). The color reaction was performed using DAB substrate solution (ImmPACT DAB, Vector Laboratories). The sections were counterstained using methyl green (MUTO, Tokyo, Japan) and mounted using mounting medium (VectaMount, Vector Laboratories). Histology was observed under light microscopy (AXIO, Zeiss).
Plasmid transfection. RAW264.7 cells were transfected with a Lyve1 overexpression vector (Lyve1_OMu20286D_pcDNA3.1+/C-(K)-DYK, GenScript, Piscataway, NJ, USA) using FuGENE HD (Promega, Madison, WI, USA) to generate Lyve1-expressing macrophages. All steps were performed in accordance with to the manufacturer’s instructions. Briefly, RAW264.7 cells (2×105 cells/ml) were seeded in 24-well plates 1 day before transfection. FuGENE/pcDNA3.1.LYVE-1 complex mixture at a ratio of 3:1 was freshly prepared containing 0.5 μg expression vector. The mixture was added to the wells and the plates were incubated under standard conditions (37°C, 5% CO2) for 24 h. Cells transfected with an enhanced green fluorescent protein (EGFP) expression vector (pMAX-EGFP, Lonza) were used as a control.
LPS stimulation and M2 macrophage polarization. For LPS stimulation, Lyve1-expressing macrophages were cultured with or without LPS (100 ng/mL, Escherichia coli O111B4, Merck, Kenilworth, NJ, USA) for 4 h. For M2 macrophage polarization, RAW264.7 cells were seeded at a low density of 104 cells/ml in 6-well plates followed by 7 days’ incubation in DMEM supplemented with 10% heat-inactivated FBS and MID, a mixture of M-CSF (100 ng/m,, BioLegend, San Diego, CA, USA), IL-4 (10 ng/ml, PeproTech, East Windsor, NJ, USA), and dexamethasone (1000 U/mL, Wako Pure Chemical Industries). Culture medium was exchanged every 2 days.
Preparation of conditioned media. RAW246.7 cells (105 cells/ml) were seeded on 60-mm culture plates and transfected with Lyve1 overexpression vector as described above. One day after transfection, the cells were washed thoroughly using PBS and replenished with serum-free EBM-2 for 24 h under standard conditions (37°C, 5% CO2). Conditioned media from Lyve1-expressing macrophages (CM-L) or RAW246.7 cells (CM-R) were collected, centrifuged at 3000 rpm for 5 min at 4°C to remove cell debris and stored at −30°C.
Reverse transcription-quantitative polymerase chain reaction. Total RNA was extracted using a QuickGene RNA cultured cell kit S (Wako Pure Chemical Industries), and cDNA (300 ng) was synthesized using PrimeScript™ RT Master Mix (Takara Bio, Kusatsu, Japan). For reverse transcription-quantitative polymerase chain reaction (RT-qPCR), template cDNA was amplified with GoTaq qPCR Master Mix (Promega) using a CFX96 Real-Time qPCR System (Bio-Rad). For normalization of the template amount, gene expression was calculated in relation to ACTB as a housekeeping gene. Specific primers are listed in Table 1.
Western blotting.Cells were lysed with a radioimmunoprecipitation assay buffer containing a protease inhibitor cocktail (complete, Roche, Mannheim, Germany) and phosphatase inhibitor cocktail (Phosstop easy pack, Roche). Proteins were separated using 10% E-PAGEL (ATTO, Tokyo, Japan). After transfer to Immobilon transfer membranes (Merck Millipore, Burlington, MA, USA) using a semi-dry transfer system (0.15 mA, 1 h, WSE-4040, ATTO), the blot was incubated with the following primary antibodies: anti-LYVE-1 (11-034, rabbit monoclonal, AngioBio), anti-DYK-tagged (M185-7, mouse monoclonal, MBL, Nagoya, Japan), anti-α tubulin (PM054-7, rabbit polyclonal, MBL), and anti-GAPDH (M171-7, mouse monoclonal, MBL). Horseradish peroxidase-conjugated anti-rabbit IgG (W4011, Promega) and anti-mouse IgG (W4021, Promega) were used as secondary antibodies. For signal detection, Immobilon Western Chemiluminescent HRP Substrate (Merck Millipore) and a digital autoradiograph imaging system (LAS-3000, Fujifilm, Tokyo, Japan) were used. The relative density of bands was quantified using ImageJ (version 1.8.0, National Institute of Health, New York, NY, USA).
Enzyme-linked immunosorbent assay. The protein level of VEGF-A in conditioned media was determined using DuoSet ELISA mouse VEGF (DY493, R&D Systems) in accordance with the manufacturer's instructions.
Wound healing assay. HUVECs (3.0×105 cells/ml) were seeded in 24-well plates in endothelial cell growth basal medium-2 (EBM-2, Lonza) containing EGM-2 (SingleQuot kit, Lonza). When HUVECs had formed a confluent cell monolayer, cells were starved in serum-free EMB-2 for 24 h. Cell monolayers were scratched with 200-μl pipette tips and carefully rinsed with PBS to create uncovered areas in the center of the cultured wells. Conditioned media (CM-L, CM-R), EBM-2 supplemented with EGM-2 (positive control), and serum-free EBM-2 (negative control) were added to culture plates. Images were captured immediately following media replacement and at 12 h and 36 h with a microscope (Axio, Zeiss). The images were analyzed, and wound areas were measured using an optimized plugin for ImageJ to automatically recognize the wound healing size53. The percentages of wound closure were calculated using the following equation:
Wound closure (%) = 100(AT=0 – AT=Δt)/AT=0
AT= 0 is the initial wound area (μm2)
AT= Δt is the wound area after 24 h or 26 h of the initial scratch (μm2).
Tube formation assay. Fifty microliters ECM gel solution (Cell Biolabs, San Diego, CA, USA) was coated on 96-well plates followed by 30-min incubation at 37°C for solidification. HUVECs were harvested and resuspended in conditioned media (CM-R, CM-L), EBM-2 supplemented with EGM-2 (positive control), and serum-free EBM-2 (negative control) at 105 cells/ml. One hundred fifty microliters cell suspension was seeded onto the solidified ECM gel and incubated for 6 h. Endothelial tubes were labeled with Calcein AM (Cell Biolabs) and examined under a fluorescence microscope (Axio, Zeiss). Several randomized images per well were captured. The numbers of nodes and junctions and total tube length were quantified by ImageJ (version 1.8.0, National Institute of Health).
Cell quantification.Quantification of cell number was performed by manual cell counting of histological sections. The images used for cell counting were randomly captured at the mesial pulp horn area and mesial coronal pulp portion with a 40× objective lens and an acquisition resolution of 1024×1024 pixels. For each analysis, representative images (n ≥ 4) of each experimental group were used.
Statistical analysis. Statistical analysis was performed using GraphPad Prism 7 (version 7.01, GraphPad Software Inc, California, USA). Data are represented as mean ± standard deviation (SD). Student’s t-test was used to evaluate differences between two groups, and one-way ANOVA with Tukey’s post hoc test was used to determine differences among different groups (n ≥ 3). P-values of <0.05 were considered statistically significant.