Viruses, cells and plasmids
The PRV AH02LA strain (a PRV variant) was isolated and identified in our lab [23]. A gE/TK-deleted PRV (PRVTK&gE-AH02) based on the PRV AH02LA strain were constructed in our lab [19]. ST cells from CVCC was cultured in Dulbecco’s Modified Eagle’s Medium (Gibco, USA) supplemented with penicillin (100U/mL), streptomycin (100μg/mL) and 2~10% fetal calf serum in a humidified incubator with 37°C and 5% CO2. The S gene was amplified by reverse transcription PCR with a pair of primers (S-F and S-R) from jejunal tissue sample of piglets that displayed typical PED clinical symptoms (acute watery diarrhea and vomiting) as previously described [24]. The amplified fragment was cloned to downstream of a pMCMV promoter. The resulting S gene expression cassette was inserted pMD19 (Takara), and named pS-T. Furthermore, to construct plasmid pS-KAN-T, a kanamycin resistance gene was cloned into the EcoR I site in pS-T.
Bacterial manipulations, PCR and sequencing
AH02LA BAC with TK, gE and gI deletion (BACPRVΔTK/gE/gI) constructed previously in our lab [19], was used to generate PRV-S BACs. Electroporation was carried out as described earlier [25]. Plasmid and PRV-S BAC DNA were performed with commercial kits (QIAGEN) according to manufacturer’s instructions. PRV-S BAC was confirmed by RFLP with BamH I.
Primers KAN ins S F/KAN ins S R (Table 1) with two EcoR I restriction sites in both terminals for cutting and ligation were used to insert a kanamycin resistance gene into plasmid S-T. Primers (PRV ins S cas UL11-10 F/PRV ins S cas UL11-10 R, PRV ins S cas UL35-36 F/PRV ins S cas UL35-36 R, PRV ins S cas UL46-27 F/ PRV ins S cas UL46-27 R or PRV ins S cas US2-1 F/PRV ins S cas US2-1 R; Table 1) were used to insert the Scas-KAN into the UL11-10, UL35-36, UL46-27 or US2-1 of BACPRVΔTK/gE/gI through the En Passant protocol [26]. Specific primers (S cas check F/S cas check R, Table 1) were used to verify the sequence of the inserted S gene expression cassette. A pair of primers (PRV BAC H1 F and PRV BAC H2 R) were used to amplify a DNA fragment (H1-H2-gI-ΔgE) including the gI gene, part of gE with the deletion of the 1286bp fragment (position 13 to 1298), and upstream and downstream homologous sequences using PRV LA-AB strain DNA as template. The primers PRV ΔgE check F and PRV ΔgE check R were used for sequencing gI and ΔgE gene. S expression cassette were confirmed by sequencing (S cas check F and S cas check R).
Generation of recombinant PRVs expressing S gene of a PEDV variant
S expression cassette was inserted into the noncoding area of BACPRVΔTK/gE/gI to replace nucleotide fragments of UL11-10, UL35-36, UL46-27 or US2-1 through the En Passant method [26]. Briefly, Scas-KAN with 40-bp homologous sequences of PRV in both terminals were amplified. After digestion with Dpn I, four PCR products was electroporated into GS1783 with BACPRVΔTK/gE/gI to achieve the first recombination at the UL11-10, UL35-36, UL46-27 or US2-1 sites. Four target recombinant clones were generated by deletion of the kanamycin resistance gene through the second recombination (Fig. 1). Selected clones were confirmed by RFLP after digestion with BamH I, and named BACPRV-S(UL11-10)ΔTK/gE/gI, BACPRV-S(UL35-36)ΔTK/gE/gI, BACPRV-S(UL46-UL27)ΔTK/gE/gI and BACPRV-S(US2-1)ΔTK/gE/gI. Moreover, S gene expression cassette was confirmed using PCR and sequencing. To obtain recombinant PRVs expressing S gene of PEDV, ST cells were transfected with approximately 1μg BACPRV-S(UL11-10)ΔTK/gE/gI, BACPRV-S(UL35-36)ΔTK/gE/gI, BACPRV-S(UL46-UL27)ΔTK/gE/gI or BACPRV-S(US2-1)ΔTK/gE/gI and 1μg H1-H2-gI-ΔgE. One to two days after transfection, non-fluorescent plaques were selected and purified to obtain homogeneous population of recombinant PRVs expressing S gene of PEDV under UV light (488nm). The S expression cassette and H1-H2-gI-ΔgE were identified with PCR and sequencing. To evaluate the genetic stability of S gene, the recombinant viruses were passaged 20 times on ST cells, and S expression cassette was verified using PCR and sequencing.
Indirect immunofluorescence assay
The ST cells were infected with PRVTK&gE-AH02 or recombinant PRVs expressing S gene of PEDV. At 2 day post inoculation, cells were washed 3 times with phosphate buffered saline (PBS) and fixed with cold fixing solution (96% ethanol: acetone =3:1) for 20 min. Cells were then washed three times with PBS and blocked with PBS+10% bovine serum albumin for 1 h. After this blocking reaction, the cells were incubated with anti-S or anti-PRV pig serum produced in our lab at 37℃ for 1 h. After washing three times with PBS, the cells were incubated with FITC-labeled goat anti-pigs IgG (Solarbio, diluted 1:100) at 37°C for 1 h. Cells were then washed as above and analyzed by inversion fluorescence microscope.
Real-time quantitative PCR
To evaluate S gene mRNA expression on the cell surface, ST cells in the six-well plates were infected with PRVΔTK&gE-AH02 or recombinant PRVs expressing S gene of PEDV at a multiplicity of infection (MOI) of 10. At 6 and 12 hours post infection, infected-cells were separately harvested. Total RNA of infected-cells was extracted using TRIzol reagent [27]. A total of 1μg total RNA from different treatments was reverse transcribed using a PrimeScript® RT Reagent Kit with gDNA Eraser (Takara Bio). Real-time quantitative PCR with a pair of primers for S gene (S exp F/ S exp R, Table 1) was carried out on Roche Light Cycler® 480 system (Roche Diagnostics, Burgess Hill, UK) using SYBR Premix Ex Taq dye (Takara) [28]. Each cDNA was analyzed in triplicate, and sample data were normalized to Beta actin expression using the 2-ΔΔCt method.
Multi-step growth kinetics
Multi-step growth kinetics of PRV AH02LA, PRVΔTK&gE-AH02 and recombinant PRVs expressing S gene of PEDV were tested on ST cells with a MOI of 0.01 as described previously [21], the culture cells were harvested at 6, 12, 24, 36, 48 and 60 hours post infection, and then were titrated in cell monolayers. Experiments were performed in triplicate.