The expression of ASS1 is upregulated in HCC spheroids
In order to investigate the role of cell adhesion, mediated by cell-cell and cell-ECM interactions in the tumor microenvironment, in the molecular mechanism underlying ASS1 function, we compared the proteomes of HCC cells cultured as monolayers (2D) or spheroids (3D) to identify a global protein response in the different in vitro conditions [Figure 1-A]. We focused on polypeptides upregulated by at least 4-fold in HCC spheroids relative to monolayers (P ≤ 0.05). Specifically, six proteins (nucleophosmin, peroxiredoxin, HSF5, aldolase A, HSPD1, and ASS1) were expressed at a higher level in HCC cell spheroids than in monolayers [Figure 1-B]. Thus, we investigated the expression patterns of these proteins in HCC monolayers and spheroids.
Western blot analysis revealed that aldolase A, HSPD1, and ASS1, but not nucleophosmin and peroxiredoxin, were significantly increased in HCC spheroids compared to monolayers. HSF5 was not detected by western blotting in HCC monolayers or tumor spheroids [Supplementary Fig. 1 and Fig. 1-C]. Because metabolic alterations have been highlighted recently as targets for HCC therapy, we focused on the metabolism-related protein ASS1 among HCC spheroid-specific proteins.
To confirm whether ASS1 expression is cell adhesion status - dependent, we measured ASS1 protein expression in lysates of monolayers and spheroids of HCC cell lines Huh7, Hep3B, SNU475 and SNU449 and of Fa2N-4 normal hepatocytes. In the monolayer culture system, the HCC cell lines scarcely expressed ASS1, whereas Fa2N-4 cells showed higher ASS1 expression. Interestingly, ASS1, which was minimally expressed in HCC monolayers, was highly expressed in HCC spheroids [Figure 1-C] and ASS1 mRNA expression was also altered in a culture-type–dependent manner [Figure 1-D].
To avoid using the less physiologically relevant genetically defined human cell lines, we attempted to confirm increased ASS1 expression in spheroids cultured using primary HCC cells isolated from liver resection specimens of five patients. We measured ASS1 mRNA and protein in lysates of monolayers and spheroids cultured from patient-derived primary HCC cells. Similar to the results with HCC cell lines, ASS1 mRNA and protein were expressed at higher levels in patient-derived HCC spheroids than in monolayers [Figure 1-E, F]. These results suggested that ASS1 expression is upregulated in the 3D HCC tumor microenvironment.
HCC patients expressing higher levels of ASS1 have a more favorable prognosis
Epigenetic silencing via methylation of the ASS1 promoter was previously demonstrated in certain cancer types, so we assessed ASS1 mRNA levels in immortalized normal hepatocyte (Fa2N-4 and Miha cell) spheroids and in HCC spheroids derived from Asian (SUN449, SUN475, SNU878, and SNU398 cells) and Caucasian (Hep3B, Huh6, HepG2, and PLC/PRF/5 cells) patients. Reverse transcription (RT)-quantitative (q) PCR analyses showed that all HCC spheroids express lower levels of ASS1 than spheroids of normal hepatocytes [Figure 2-A]. Next, we also examined ASS1 protein expression in HCC spheroids derived from Asian and Caucasian HCC patients. All spheroids of Korean patient-derived HCC cells showed dramatically lower ASS1 expression than spheroids of normal hepatocytes. In contrast, some spheroids of Caucasian patient-derived liver cancer lines, such as Hep3B and PLC/PRF/5, exhibited ASS1 expression similar to that of normal hepatocyte spheroids. The ASS1 expression appears to be lower in HCC cells derived from Asian patients than from Caucasian patients [Figure 2-B].
We investigated ASS1 mRNA expression in tumor spheroids from primary HCC cells derived from eight Korean liver cancer patients. The cells were passaged only 3–6 times. We also measured ASS1 mRNA expression in tumor spheroids from six Asian patient-derived HCC lines (SUN449, SUN475, SNU878, AMC-H1, AMC-H2, and Huh7), three Caucasian patient-derived liver cancer lines (Hep3B, Huh6, and adenocarcinoma line SK-Hep1), and normal hepatocytes (Fa2N-4). All tumor spheroids of the eight Korean patients displayed significantly lower ASS1 mRNA expression than in spheroids of normal hepatocytes. Expression of ASS1 mRNA was also lower in HCC spheroids of Caucasian and Asian patients than in spheroids of normal hepatocytes [Figure 2-C].
Based on these results, we next investigated the clinical significance of ASS1 expression in Korean patients with liver cancer because its incidence and mortality rate is the highest in the world, even though ASS1 is not prognostic in liver cancer, according to The Cancer Genome Atlas (TCGA) program.
ASS1 expression was quantified by western blotting in tissue from 58 Korean patients with nodular liver cancer and hepatitis B infection. Representative ASS1 expression patterns are shown in Fig. 2-D and Supplementary Fig. 2.
Because ASS1 expression varied among patients, we performed further statistical analysis. The 58 liver cancer patients were divided into three groups based on the results of western analysis: 1) higher ASS1 expression in tumor vs. peritumoral tissue (n = 7); 2) lower ASS1 expression in tumor vs. peritumoral tissue (n = 51); and 3) no significant difference in ASS1 expression between tumor and nontumor tissue (n = 0). The results of this analysis indicated that ASS1 expression was lower in tumor tissue than peritumoral tissue from Korean HCC patients. We wondered whether a correlation existed between ASS1 expression in tumor tissue and survival rate after resection in patients with liver cancer. The two groups with differential ASS1 expression exhibited significant differences in 10-year survival rates after resection that were significantly higher when ASS1 expression was higher in tumor vs. peritumoral tissues [Figure 2-E].
These results suggest that HCC patients with increased ASS1 expression in tumor tissue have a more favorable prognosis than patients with lower ASS1 expression, which prompted us to focus on the potential tumor suppressor roles of ASS1 during HCC progression.
ASS overexpression inhibits HCC tumor growth and improves chemotherapy efficacy
To investigate the effects of altered ASS1 expression on HCC cell growth and migration, we established ASS1-overexpressing HCC cell lines. First, we examined whether ASS1 controlled cell growth in HCC. Cell survival was diminished by ASS1 overexpression in Huh7 and SNU475 cells [Figure 3-A], whereas the cell doubling times increased in Huh7, SNU475 and SNU449 cells [Figure 3-B].
To determine whether the ASS1-induced inhibition of cell growth was associated with an increase in apoptosis, we evaluated apoptosis-related parameters using Annexin V-FITC/PI assay kit. Following ASS1 overexpression, the number of Annexin V-positive Huh7 and SNU475 cells was increased [Figure 3-C]. Additionally, we measured caspase-3/7 activity and expression of cleaved poly (ADP-ribose) polymerase (PARP) in ASS1-overexpressing HCCs. ASS1 overexpression not only promoted caspase-3/7 activity [Figure 3-D], but also increased levels of cleaved PARP in Huh7 and SNU475 cells [Figure 3-E]. These results showed that ASS1 overexpression can inhibit HCC growth by delaying cell growth and inducing apoptosis.
Wound-healing assays revealed that the migratory capacity of HCC cells was attenuated by ASS1 expression [Figure 3-F]. Because cells in epithelial-to-mesenchymal transition (EMT) acquire increased migratory capacity, we next measured the expression of EMT-related proteins (E-cadherin, N-cadherin, α-SMA, and Snail-1) in ASS1-overexpressing HCC cells. Although upregulation of N-cadherin, Snail-1, and α-SMA and downregulation of E-cadherin enhance EMT, which plays a pivotal role during HCC progression, EMT was inhibited by ASS1 overexpression in Huh7 and SNU475 cells [Figure 3-G].
Previous reports showed that cisplatin sensitivity is restricted during cancer in an ASS1- expression–dependent manner. Herein, we observed responses to cisplatin with respect to ASS1 expression levels in Hep3B and PLC/PRF/5 cells, which normally express higher than average levels of ASS1 among HCC cell lines, and Huh7 and SNU475 cells, which minimally express ASS1. When we compared the sensitivities of normal and ASS1-deficient Hep3B cells to cisplatin treatment coupled with siRNA-mediated ASS1 knockdown, depletion of ASS1 shifted the cisplatin IC50 from 4.231 µM to 9.372 µM [Figure 3-H]. Moreover, ASS1-deficient PLC/PRF/5 cells showed slight resistance to cisplatin relative to control-siRNA-transfected cells [Supplementary Table II], whereas ASS1-overexpressing Huh7 and SNU475 cells displayed greater sensitivity to cisplatin than wild-type cells [Figure 3-I, Supplementary Table III]. Furthermore, sensitivity to sorafenib, which is the only systemic chemotherapeutic agent available for HCC, was slightly affected by altered ASS1 expression [Supplementary Table II, III].
ASS1 is upregulated through ER stress responses in HCC spheroids
To identify genes associated with ASS1 upregulation, we performed microarray analysis using ASS1-overexpressing HCC spheroids. Four genes, ASNS, ATF3, CHOP, and HSPA1A, were selected because their expression levels changed ≥ 2-fold with ASS1 overexpression in HCC cells. Based on the results of pathway analysis ATF4, ATF6, HSP90B1, HSPA5, CALR, and XBP1 were also examined for their roles in ASS1 signaling [Figure 4-A, Supplementary Table I].
Because most of the genes selected from the microarray analysis were closely related to potential ER stress responses, and the mechanism of ASS1 overexpression in spheroids was unknown, we explored the possible correlation between ER stress response and ASS1 expression in HCC monolayers or HCC spheroids. As expected, HCC spheroids of SNU475, SNU449, and Huh7 cells exhibited higher expression levels of ER stress-response–related proteins (CHOP, XBP1, GRP78, and ATF3) and ASS1 than monolayer cells [Figure 4-B].
To determine whether ER stress contributes to ASS1 synthesis in HCC microenvironments, we analyzed the effects of thapsigargin and tunicamycin, which induce ER stress and the unfolded protein response (UPR), on regulation of ASS1 expression in Huh7 and SNU475 cells. ASS1 mRNA expression significantly increased in a dose-dependent manner with thapsigargin [Figure 4-C] and tunicamycin [Figure 4-D] treatment in Huh7 cells and SNU475 cells by enhancing ASS1 promoter activity [Figure 4-E, F]. Accordingly, treatment with thapsigargin and tunicamycin resulted in increasing ASS1 protein expression in Huh7 and SNU475 cells [Figure 4-G, H]. Furthermore, immunohistochemistry results revealed that ASS1 is translocated from the cytoplasm to the ER during thapsigargin- or tunicamycin-induced ER stress response and UPR in HCC cells [Figure 4-I]. These results suggested that ASS1 is upregulated via ER stress response in the HCC microenvironment.
ASS1 controls cell fate through upregulation of PERK/eIF2α/ATF4/CHOP signaling in HCC
We next focused on the functional roles of ASS1 with respect to ER stress response in HCC. Among three ER stress sensor proteins, inositol-requiring enzyme-1 (IRE1), PKR-like ER kinase (PERK), and activating transcription factor-6 (ATF6), ASS1 overexpression in Huh7 and SNU475 cells led to notable upregulation of PERK and ATF6 expression. The PERK/eIF2α/ATF4/CHOP pathway has pivotal roles in the induction of apoptotic cell death during ER stress responses [8]. ATF6 is cleaved by S1P and S2P proteases in the Golgi apparatus under ER stress conditions, and then cleavage of ATF6 (p50 ATF6f) leads to upregulation of chaperones, XBP1, and the pro-apoptotic factor CHOP via translocation to the nucleus [9]. Cancer cells exploit the IRE1α-XBP1s arm of the ER stress response to efficiently adjust their protein-folding capacity and ensure survival under hostile tumor microenvironmental conditions [10]. Interestingly, ASS1 overexpression increased expression of proteins in PERK/eIF2α/ATF4/CHOP signaling nodes and expression of XBP1u, which is induced by ATF6, whereas expression of proteins in the IRE1α-XBP1s pathway was not altered in HCCs by ASS1 overexpression.
CHOP (DDIT3) in the PERK/eIF2α/ATF4/CHOP pathway, also known as C/EBP homologous protein and DNA damage inducible transcript 3, plays a central role in ER stress-mediated apoptosis [11–13].
Because its expression was substantially increased in ASS1-overexpressing HCC cells, we explored whether ASS1 overexpression could increase ER stress-mediated apoptosis. Following treatment of SNU475 and Huh7 cells with thapsigargin for 48 h, markers of apoptosis, such as cleaved PARP and cleaved caspase-3, as well as CHOP, were significantly upregulated in ASS1-overexpressing vs. wild-type SNU475 and Huh7 cells [Figure 5-B]. ASS1-overexpressing SNU475 cells displayed greater sensitivity to thapsigargin than wild-type SNU475 cells [Figure 5-C]. ASS1 was also silenced in Hep3B cells to confirm whether ASS1 knockdown would inhibit ER stress-mediated apoptosis in HCC cells that innately express higher than average levels of ASS1. Compared with control- siRNA-transfected cells, ASS1 knockdown led to significantly reduced survival of cells treated with thapsigargin [Figure 5-D]. These results demonstrated that ASS1 overexpression could facilitate and magnify ER stress-mediated apoptosis in HCC.
Because ASS1 overexpression concurrently elevated CHOP levels and facilitated ER stress-mediated apoptosis, we next examined whether CHOP is the key mediator of the ASS1-mediated apoptosis in HCCs.
Rescue experiments downregulating CHOP in ASS1-overexpressing HCC cells were performed using a colony-forming assay. Inhibition of CHOP restored diminished clonogenic survival by ASS1 overexpression in Huh7 and SNU475 cells [Figure 5-E]. Moreover, increased levels of cleaved PARP and cleaved caspase-3 by ASS1 overexpression were also inhibited by depletion of CHOP in HCCs [Figure 5-F]. These results demonstrate that CHOP is the key mediator of ASS1-mediated apoptosis in HCCs.
We next examined whether ASS1 directly modulates CHOP expression using siRNAs targeting ASS1 in ASS1-ovexpressing Huh7 cells. Transfection with siRNA targeting ASS1 effectively attenuated expression of CHOP [Figure 5-G]. To explore the relationship between ASS1 and CHOP in vivo, we investigated expression patterns of ASS1 and CHOP in patient HCC tissue. ASS1 protein expression was proportionally correlated with CHOP expression [Figure 5-H]. The patterns of ASS1 and CHOP expression revealed by immunostaining of HCC tissue showed that the expression levels of those two proteins were not only correlated with one another but that the proteins were also co-localized [Figure 5-I]. Taking a closer look, co-localization of ASS1 and CHOP was also observed in HCC cells [Figure 5-J]. To evaluate the direct interaction between ASS1 and PERK pathway related genes including PERK, ATF4 and CHOP in response induction of ER stress, we conducted immunoprecipitation (IP) assay with anti-flag in ASS1-flag overexpressed cells. As the result, ATF4 and CHOP were dominantly interacted with ASS1, especially in response ER stress induce condition [Figure 5-K].
ASS1 acquires tumor suppressor activity independent of arginine metabolism and the p53 pathway
Through arginine synthesis, ASS1 plays critical key roles in the production of nitric oxide (NO), which paradoxically exhibits both cancer-promoting and -restricting effects depending on the cellular environment. Thus, we also explored whether the effects of ASS1 on ER stress-mediated apoptosis is dependent on NO production in HCC and found that NO was increased in ASS1-overexpressing cells and was reduced in ASS1-depleted cells [Figure 6-A]. We detected altered expression of CHOP in ASS1-overexpressing cells following treatment with the NO scavengers cPTIO and cupral. Increased levels of CHOP previously detected in ASS1-overexpressing HCC cells were not altered by NO scavenging [Figure 6-B]. Moreover, treatment with cPTIO and cupral did not affect inhibition of cell survival caused by ASS1 overexpression [Figure 6-C]. These results indicate that ER stress-mediated apoptosis in ASS1-overexpressing cells is not related to NO production derived from arginine metabolism.
As p53 is a well-characterized tumor suppressor gene, we determined whether ASS1-associated ER stress could regulate the p53 pathway in HCCs. ASS1 overexpression did not alter p53 or p21 expression in p53 wild-type HCC (Fa2N-4 and HepG2) cells, as well as CHOP and phospho-histone H2AX (γ-H2AX) expression also did not change by ASS1 expression in p53 wild-type HCC cells [Figure 6-D]. In addition, cell survival by ASS1 expression was not distinctly observed in p53 wild-type cells [Figure 6-E]. However, expression of CHOP and γ-H2AX were dramatically increased by ASS1 overexpression exclusively in p53-mutant HCC (Huh7, SNU475, and Hep3B) cells [Figure 6-F]. Moreover, clonogenic survival by ASS1 expression were significantly diminished in p53-mutant HCC cells [Figure 6-G]. These results demonstrate that the ASS1-dependent DNA damage and -CHOP associated apoptosis are more facilitated in p53-mutant HCC than in p53 wild-type HCC cells.
Decitabine improves the efficacy of anti-HCC chemotherapeutic drugs by increasing ASS1 expression
Because ASS1 plays a key role in ER stress-mediated apoptosis, we aimed to identify modulators of ASS1 expression to improve HCC therapy. Hence, we performed screening to identify compounds that specifically alter the activity of the ASS1 promoter.
We screened 3,527 compounds selected from compound libraries (including LOPAC, Selleck anticancer and kinase inhibitors, FDA collection, and IND drugs) for drug repositioning in duplicate to confirm the reproducibility of observed effects. Compounds were screened at an initial concentration of 1 uM with a readout looking at an increase in ASS1 promoter activity. Positive and negative controls would be 10 nM thapsigargin and 0.01% dimethyl sulfoxide. A Pearson correlation coefficient of 0.71 for replicate screens indicated that the assay was reliable [Figure 7-A]. Fifteen compounds, including thapsigargin, constituted the primary hits that significantly elevated ASS1 promoter activity [Supplementary Table IV]. Through follow-up dose-response studies performed to quantify the potency of selected hits [Supplementary Fig. 3], we found that decitabine, a hypomethylating agent, most efficiently elevated ASS1 promoter activity among the hits in HCC cells [Figure 7-B], although treatment with decitabine did not result in anti-HCC efficacy [Supplementary Fig. 4].
Furthermore, expression of both ASS1 and CHOP was significantly enhanced in the presence of decitabine in Huh7, SNU449, and SNU475 cells [Figure 7-C].
Next, we investigated whether increasing ASS1 expression via decitabine treatment improved efficacy of conventional chemotherapy against HCC. Treatment with decitabine significantly enhanced sensitivity to cisplatin in Huh7 [Figure 7-D, E] and SNU449 cells [Figure 7-F]. Expression of apoptosis markers, such as cleaved PARP and caspase-3, was increased in HCC cells after treatment with cisplatin and decitabine in Huh7 and SNU 475 cells [Figure 7-G].
To determine whether decitabine could enhance the efficacy of anti-HCC therapies in vivo, we transplanted Huh7 cells into BALB/c mice. Administration of decitabine or cisplatin alone led to a subtle reduction of tumor growth or tumor regression, respectively. However, combination treatment with both agents significantly reduced tumor volume vs. treatment with cisplatin alone [Figure 8-A, B], suggesting that decitabine can act as a therapeutic adjuvant with cisplatin to treat HCC. Western analysis of tumor tissue showed that treatment with cisplatin plus decitabine increased levels of cleaved PARP relative to cisplatin alone [Figure 8-C, D] and administration of decitabine induced upregulation of ASS1 in HCC-implanted xenograft mice, as in vitro [Figure 8-C, E]. These data suggest that decitabine might serve as a sensitizer for highly efficient treatment of HCC with cisplatin.
Taken together, our results show that treatment with decitabine increases ASS1 expression, thereby facilitating the robust therapeutic activity of combined decitabine and anti-HCC therapies, such as cisplatin.