2.1 Materials and reagents
Flow cytometry antibodies and reagents: FITC-conjugated anti-mouse CD11b, APC-conjugated anti-mouse CD45, PE-conjugated anti-mouse LAMP1 and PE-conjugated anti-mouse CD86 were purchased from Biolegend (USA), anti-CD16/CD32 Fc Block and Myelin Removal Beads was purchased from Miltenyi Biotec (Germany). Western blot and immunofluorescence (IF) antibodies: IBA-1 (R&D systems, USA); VGLUT1(Santa Cruz Biotechnology, USA); LAMP1 and CD68 were purchased from Abcam (United Kingdom); albumin, PSD95 and PKM2 were purchased from Proteintech (China). β-catenin, Cyclin-D1, c-Myc, ENO1, PFKFB3, HK1, LDHA, PDK1, GLUT1 were purchased from Cell Signaling Technology (USA), Horseradish peroxidase (HRP)-linked goat anti-rabbit IgG (Fcmacs, China), NeuN (Santa Cruz Biotechnology), donkey anti-rat IgG H&L (Alexa Fluor®647) (Abcam), goat anti-mouse IgG-TRITC (Abcam), rabbit anti-goat IgG-FITC (Fcmacs). ELISA kit: Maltose and Glucose assay kit (RayBiotech, USA), L-lactate assay kit (Cayman, USA), interleukin (IL)-6 (Fcmacs), IL-1β (Fcmacs). TRIzol reagent and SYBR green dye were bought from Invitrogen (Carlsbad, USA). PKM2 overexpression plasmid was purchased from Nanjing Jereh Company (China), and RFectPM Eukaryotic DNA Transfection Kit was purchased from Changzhou EMI Company (China). PKM2 inhibitor Shikonin and β-catenin protein inhibitor (KYA1797K) were purchased from MCE Company (USA). Fluoro-Jade B (FJB) Detection Kit was bought from Merck & Millipore Company (Germany).
2.2 Animals
About 6–8-week-old female MRL/Mp-Faslpr (MRL/lpr) and C57BL/6 (control) mice [36] were obtained from Shanghai Slaccas Laboratory Animal Breeding Company (Shanghai, China). All mice were maintained under specific pathogen-free (SPF) conditions at a 12 h light/dark cycle and 20–22 °C. The animals were allowed free access to drinking water. The mice were acclimatized to these housing conditions for at least one week. The mice were randomly divided into the following groups with 10 mice in each group: control, administration (Shikonin), MRL/lpr, treatment (MRL/lpr + Shikonin). When mice were grown to 10th week, Shikonin and MRL/lpr + Shikonin groups were administered with Shikonin (5 mg/kg) via intraperitoneal injection, three times/week. When grown to week 20, the mice were sacrificed. The experiments on mice were approved by Institutional Animal Care and Use Committee, Nanjing University, and all experiments were performed in accordance with relevant guidelines and regulations.
2.3 Metabolites extraction
Hippocampus was dissected on a cold plate and frozen in liquid nitrogen. The tissue was homogenized in 80% methanol (made with methanol and water) on ice, vortexed for 30 s, sonicated for 10 min in an ice-water bath, and incubated for 1 h at −20 °C to precipitate the proteins. The supernatant from the remaining sample was obtained by centrifugation at 12000 ×g for 15 min at 4 °C. The extracts were dried in a vacuum concentrator without heating. A volume of 100 μL extraction solvent (V acetonitrile: V water = 1:1) was added for reconstitution, which was vortexed 30 s and sonicated for 10 min in a 4 °C water bath, followed by centrifugation for 15 min at 12000 ×g at 4 °C. The supernatant (60 μL) of each sample was analyzed for metabolites [37].
2.4 Metabolomic analysis by liquid chromatography-mass spectrometry (LC-MS)
LC-MS/MS analyses were performed using a UHPLC system (1290, Agilent Technologies Santa Clara, CA, USA) with a UPLC HSS T3 column (2.1 mm × 100 mm, 1.8 μm) coupled to Q Exactive (Orbitrap MS, Thermo, USA). The mobile phase A comprised of 0.1% formic acid in water for normal phase (NP-HPLC) and 5 mmol/L ammonium acetate in water forreverse phase (RP-HPLC). The mobile phase B was acetonitrile. The elution gradient was set as follows: 0 min, 1% B; 1 min, 1% B; 8 min, 99% B; 10 min, 99% B; 10.1 min, 1% B; 12 min, 1% B. The flow rate was 0.5 mL/min, and the injection volume was 2 μL. A QE mass spectrometer was used to record MS/MS spectra in an information-dependent manner during the LC-MS experiment. In this mode, acquisition software (Xcalibur 4.0.27, Thermo) continuously evaluates the full-scan survey MS data as it collects and triggers MS/MS spectra acquisition based on the preselected criteria. The electrospray ionization (ESI) source conditions were set as follows: sheath gas flow rate of 45 Arb, Aux gas flow rate of 15 Arb, capillary temperature of 400 °C, full MS resolution of 70000, MS/MS resolution of 17500, collision energy of 20/40/60 eV in normalized collisional energy (NCE) model, and spray voltage of 4.0 kV (positive, POS) or −3.6 kV (negative, NEG).
The raw data were converted into the mzXML format using ProteoWizard and processed by MAPS software (version 1.0). The preprocessing results generated a data matrix that consisted of retention time, mass-to-charge ratio (m/z), and peak intensity. An in-house tandem mass spectrometry (MS2) database was utilized for metabolite identification. The resulting three-dimensional (3D) data involving peak number, sample name, and normalized peak area were entered into SIMCA14.1 software package (V14.1, Sartorius Stedim Data Analytics AB, Umea, Sweden) for principal component analysis (PCA) and orthogonal projections to latent structure-discriminate analysis (OPLS-DA). PCA showed the distribution of the original data. Supervised OPLS-DA was applied to obtain a high level of group separation and identify variables responsible for classification. Seven-fold cross-validation was used to estimate the robustness and predictive ability of our model. The permutation test further validated the model. A loading plot was constructed on the basis of OPLS-DA and showed the contribution of variables to differences between the two groups. The first principal component of variable importance in projection (VIP) was obtained to refine the analysis. If P < 0.1 and VIP > 1, then the variable was defined as a significantly differential metabolite (SDM) between the groups. The SDMs, obtained from LC-MS, were imported into MetaboAnalyst 4.0 to explore different potential metabolic pathways in the hippocampus between MRL/lpr and control groups. As shown in Fig. 1C, the bubble plots demonstrated the main influential metabolic pathways [37, 38].
2.5 Measuring glucose consumption and lactate production
The hippocampal tissues of different groups of mice were lysed to obtain hippocampal tissue homogenates. According to the manufacturer’s instructions, the Maltose and Glucose Assay Kit was used to determine the glucose concentration in the hippocampal tissue homogenates, while the L-Lactate Assay Kit was used to determine the concentration of lactic acid in the hippocampal tissue homogenate according to the manufacturer’s protocol.
2.6 Flow cytometry analysis of mouse microglia
The flow cytometry labeling and experimental method of mouse microglia were designed by Bennett et al [39]. (Fig. 4A). The mice were sacrificed by cervical dislocation, hippocampus/cortex was excised on ice immediately, and the tissue dispersed to prepare a single-cell suspension. According to the manufacturer’s instructions, the myelin removal beads were used to enrich microglia [40]. After sorting, single cells were pre-blocked with anti-CD16/CD32 Fc Block for 10 min, stained on ice for 30 min with combinations of CD11b-FITC, CD45-APC and CD86-PE, and CD86-PE or LAMP1-PE, rinsed twice with phosphate-buffered saline (PBS), and finally resuspended in 200 μL buffer for subsequent evaluation by flow cytometry (BD Accuri™ C6, BD Biosciences, USA), according to the manufacturer’s instructions [41]. Data were analyzed using FlowJo software. Microglia were defined as CD11b+CD45lo, proinflammatory microglia were defined as CD11b+CD45loCD86+.
2.7 Brain pathological evaluation
The whole-brain of the mice was fixed with 4% polyoxymethylene (PFA) and sliced into 5-mm-thick sections for hematoxylin/eosin (HE) staining. The images were observed and photographed under a microscope. The pathological changes in the brain of the control and lupus groups were observed to evaluate brain damage. FJB kit was used to stain the degenerated neurons in the brain to evaluate the neuronal degeneration, according to the manufacturer’s instructions [42].
2.8 PKM2 detection in microglia and neurons by IF staining
Double IF staining was carried out to detect PKM2 expression in microglia and neurons in hippocampus tissue. Briefly, 8-µm-thick frozen liver slices were fixed in cold methanol/acetone (1:1) for 10 min at −20 °C. After PBS washes, the samples were blocked with 3% bovine serum albumin (BSA) in PBS for 60 min at room temperature, followed by incubation with anti-IBA-1, anti-PKM2, and anti-NeuN primary antibodies (1:200) overnight at −4 °C. Subsequently, the samples were incubated with goat anti-mouse IgG-TRITC and rabbit anti-goat IgG-FITC secondary antibodies (1:400) for 1 h at room temperature in the dark, followed by nuclei staining with 2-(4-amidinophenyl)-1H-indole-6-carboxamidine (DAPI). The slides were visualized using a Nikon Eclipse Ti-U fluorescence microscope equipped with a digital camera (FV300, Olympus, Japan).
2.9 RNA extraction and quantitative real-time PCR (qPCR)
Total RNA was extracted from cells using TRIzol reagent, and 1 μg total RNA was reverse transcribed in a 20-μL reaction, according to the manufacturer’s instructions. The oligonucleotide primers used for PCR amplification are listed in Table 1. All reactions were carried out in triplicate. The expression levels of the target genes were normalized to that of GAPDH.
Table 1 Primers used for q-PCR in this study
Gene
|
Forward
|
Reverse
|
GAPDH
|
GCATGGCCTTCCGTGTTCC
|
GGGTGGTCCAGGGTTTCTTACTC
|
PKM2
|
TCAGAGCTCCAACGCTTGTAGAACTCACTC
|
CCGCTCGAGAAATGGAAGGTGGAGGG
|
ENO1
|
GCCTCCTGCTCAAAGTCAAC
|
AACGATGAGACACCATGACG
|
HK1
|
TGCCATGCGGCTCTCTGATG
|
CTTGACGGAGGCCGTTGGGTT
|
PFKFB3
|
ATTGCGGTTTTCGATGCCAC
|
GCCACAACTGTAGGGTCGT
|
LDHA
|
ATGGCAACTCTAAAGGATCA
|
GCAACTTGCAGTTCGGGC
|
PDK1
|
AGGCAAAGGAAGTCCATCTCA
|
CCCATGCATTTGTGCCTACC
|
GLUT1
|
CAATGCTGATGATGAACCTGCTGG
|
GAACACCTGGGCGATGAGGATG
|
2.10 Western blot
Proteins were extracted by standard techniques [43]. Typically, total proteins were separated by Sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to polyvinylidene fluoride (PVDF) membranes (Millipore Co, Bedford, MA, USA). Then, the membranes were blocked in 5% BSA dissolved in TBST (50 mM Tris/HCL, pH 7.6, 150 mM NaCl and 0.1% Tween-20) for 2 h at room temperature and probed with indicated primary antibodies overnight at 4 °C, followed by incubation with appropriate HRP-linked secondary antibody 2 h at room temperature. The immunoreactive bands were visualized using enhanced Chemiluminescence (ECL) plus western blot detection reagents (SupersignalTM West Pico PLUS, Thermo, USA). The gray values were analyzed by Image J software (National Institutes of Health, Bethesda, MD, USA).
2.10 Cytokine detection by enzyme-linked immunosorbent assay (ELISA)
ELISA was used to detect the content of inflammatory factors (IL-1β and IL-6) in the hippocampus of mice using the commercial kits, according to the manufacturer’s instructions. The mouse hippocampal tissue protein extract was at dilution of 1:5.
2.11 Cell culture and treatment
Microglia cell line BV2 cells and neuronal cell line HT22 cells were obtained from Nanjing Gulou Hospital and cultured in Dulbecco’s modified eagle’s medium (DMEM) medium with high glucose (Gibco) containing 10% fetal bovine serum (FBS; Gibco) at 37 °C with 5% CO2. An equivalent of 2×106 BV2 cells/mL was seeded in 6-well or 12-well plates. After cell confluency exceeded 30%, the cells were transfected with PKM2 plasmid. The cells were collected and treated with β-catenin inhibitor (KYA1797K), at a 200 ng/mL concentration. After transfection with PKM2 plasmid or treatment with KYA1797K, BV2 cells were co-cultivated with HT22 cells at a ratio of 1:3 for 24 h and collected cells for subsequent experiments.
2.12 Detection of microglial phagocytosis
The phagocytic capacity of microglia was determined using the method described previously [44]. Briefly, BV2 cells were seeded into 6-well plates at a density of 50,000 cells/well in DMEM medium. FBS and fluorescent yellow-green-labeled 1-mm amine-modified polystyrene latex beads were mixed at a ratio of 1:5 and incubated in a 37 ℃water bath for 1 h. Subsequently, the cells were washed twice with PBS and incubated with DMEM-containing fluorescent beads for 1 h at 37 ℃. Finally, the cells were collected for flow cytometry detection.
2.13 Behavioral assays
The majority of the 16-week-old MRL/lpr mice exhibited characteristic cognitive dysfunctions [45], as assessed by behavioral assays. Morris water maze (MWM) test was conducted to assess hippocampus-dependent spatial learning and memory functions in rodents [46, 47]. The MWM tests included two parts: the spatial acquisition and probe trials. The spatial acquisition trial was performed for three consecutive days. In each trial, the mouse was allowed to search the platform within 60 s, and could stay on the platform for 5 s after it was located. The mouse that failed to find the platform in 60 s was guided to it manually and ordered to remain on the platform for 15 s and 60 s, respectively, which was regarded as latency. The time spent on searching and mounting the platform (latency) was calculated. On day 4, a probe trial was performed for reference memory by removing the platform. The mice were randomly placed into two selected quadrants, which had different distances to the platform and were allowed to swim freely for 60 s. The percentage of time spent in the target quadrant and platform crossings was recorded, analyzed, and considered as an indicator of memory retention.
The fear-conditioning paradigm was assessed, as described previously [48, 49]. Briefly, mice were trained to associate cage context or an audiovisual cue with an aversive stimulus (foot-shock). The test was administered over two days. On day 1, mice were placed in a cage and exposed to two periods of 30 s each of paired cue light and 3000-Hz tone, followed by a 2-s foot shock (0.8 mA) with a 180-s interval. On day 2, mice were subjected to two trials. In the first trial assessing contextual memory, mice were re-exposed to the same cage context, and freezing behavior was measured over 1–3 min, using a FreezeScan tracking system (CleverSys, Inc., Reston, VA). In the second trial measuring cued memory, mice were placed in a novel context and exposed to the same cue light and tone from day 1 after 2 min of exploration. The freezing behavior was measured for 1–3 min following the cue.
2.14 Statistical analysis
All data are presented as mean ± standard error of mean (SEM), and each experiment included triplicate sets. The significant differences among groups with one independent variable was determined by one-way analysis of variance (ANOVA) with a Tukey’s multiple comparisons test for planned comparisons. P-value < 0.05 was considered significant. Graph Pad Prism 5 was used for data analysis (GraphPad Software Inc., CA, USA).