2.1 Cell lines and culture
The human breast cancer cell lines (MDA-MB-231 and MCF7) and human umbilical vein endothelial cells (HUVECs) were purchased from ATCC (Middlesex, UK). These cells were maintained in Dulbecco’s Modified Eagle’s Medium (DMEM/Ham’s F-12 with L-Glutamine) (Sigma-Aldrich, Dorset, UK), supplemented with antibiotics (Sigma-Aldrich, Dorset, UK) and 10% fetal bovine serum (FBS) (Sigma-Aldrich, Dorset, UK). Cells were cultured at 37°C, 5% CO2 in a humidified incubator.
2.2 Stable cell lines overexpressing Tim-3
To establish Tim-3 overexpressing breast cancer cell lines, the lentiviral vectors containing full length of Tim-3 (PLV [Exp]-EGFP: T2A: Puro-CMV> hHAVCR2 [NM_032782.4]) or Scramble (Scr) negative control (PLV [Exp]-EGFP: T2A: Puro-CMV>stuffer_300bp) were transduced into MDA-MB-231 and MCF7 cells respectively (Vector builder, USA) according to the manufacturer's instructions. Briefly, 5×104 cells were seeded into a 6-well plate overnight, and then subjected to medium containing 10 μg/ml polybrene and lentiviral particles. After incubation for 20 hours, the normal medium was applied for subsequent expansion for 3 days. Puromycin (Sigma, St. Louis, MO, USA) at a concentration of 2 μg/ml was used for stable cell selection. Following selection for one week, the stable cell lines were cultured in maintenance medium containing 0.25 μg/ml puromycin.
2.3 Quantitative real-time PCR(q-PCR)
Total RNA from cultured cells was extracted using TRIzol reagent (Sigma-Aldrich, Dorset, UK) according to the manufacturer's instruction. RNA was then reverse transcribed into cDNA using the GoScript™ Reverse Transcription System kit (Promega, Madison, WI, USA). Subsequently, quantitative real-time PCR was carried out using an iCycler iQ™ (Bio-Rad Laboratories, Hemel Hempstead, UK) following the cycling conditions: 94°C for 5 min, 100 cycles of 94°C for 10 sec, 55°C for 35 sec and 72°C for 20 sec. The primer sequences used in this study were listed in Table 1. Levels of mRNA were normalized to those of glyceraldehyde-3-phosphate dehydrogenase (GAPDH) using the 2‑ΔCt method.
Table 1. Primer sequences used in the qRT-PCR.
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Gene
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Forward Primers(5'-3')
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Reverse Primers(5'-3')
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CCND1
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CGGTGTCCTACTTCAAATGT
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ACTGAACCTGACCGTACAGAAGCGGTCCAGGTAGTTC
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C-Myc
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TGCTCCATGAGGAGACAC
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ACTGAACCTGACCGTACATGATCCAGACTCTGACCTTT
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E-cadherin
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CACACGGGCTTGGATTT
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ACTGAACCTGACCGTACAGACCTCAAAAGGTACCACAT
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GAPDH
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CTGAGTACGTCGTGGAGTC
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ACTGAACCTGACCGTACACAGAGATGATGACCCTTTTG
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IL-6
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TCATCACTGGTCTTTTGGAG
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ACTGAACCTGACCGTACACAGGGGTGGTTATTGCATC
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MMP1
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CTTTTGTCAGGGGAGATCAT
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ACTGAACCTGACCGTACAGGTCCACCTTTCATCTTCAT
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NF-κB
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ACAGAGAGGATTTCGTTTCC
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ACTGAACCTGACCGTACAGTTGCAGATTTTGACCTGAG
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Occludin
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GAATTCAAACCGAATCATTG
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ACTGAACCTGACCGTACATGAAGAATTTCATCTTCTGG
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STAT3
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CATGGAAGAATCCAACAACG
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ACTGAACCTGACCGTACAAATCAGGGAAGCATCACAAT
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Tim-3
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GCTCCATGTTTTCACATCTT
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ACTGAACCTGACCGTACAATTCCACTTCTGAGGACCTT
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TWIST
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AGCAACAGCGAGGAAGAG
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ACTGAACCTGACCGTACAGAGGACCTGGTAGAGGAAGT
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VEGFA
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GAGCCGGAGAGGGAG
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ACTGAACCTGACCGTACACTGGGACCACTTGGCAT
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VEGFD
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TCCACATTGGAACGATCTGA
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ACTGAACCTGACCGTACACTCCACAGCTTCCAGTCCTC
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ZO-1
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TGACACACATGGTAGACTCA
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ACTGAACCTGACCGTACAGTAACTGCGTGAATATTGCT
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ZO-2
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CAAAAGAGGATTTGGAATTG
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ACTGAACCTGACCGTACAGAGCACATCAGAAATGACAA
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β-catenin
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AAAGGCTACTGTTGGATTGA
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ACTGAACCTGACCGTACACTGAACTAGTCGTGGAATGG
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Note: Z Sequence ‘ACTGAACCTGACCGTACA’ is highlighted in bold font.
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2.4 Western blotting
Cells grown in culture flasks were detached and lysed using a protein lysis buffer. Protein concentration was determined by a Bio-Rad DC protein assay kit (Hemel-Hempstead, UK). Equal amounts of protein samples were separated using sodium dodecyl sulphate-polyacrylamide gel electrophoresis (SDS-PAGE) and blotted to PVDF membrane. The membrane was then blocked using 5% skimmed milk for 2 hours. Proteins were then probed with a primary antibody and a corresponding peroxidase-conjugated secondary antibody. The stained protein bands were visualized using Luminata Forte Western HRP substrate (Merck Millipore, Hertfordshire, UK) and analysed using the ImageJ software (National Institutes of Health, Bethesda, MD, USA) by densitometry.
The antibodies of Tim-3 (Ab241332), NF-κB (p65) (Ab16502), p-NF-κB (p-p65) (Ab194726) and VEGFA (Ab9570) were purchased from Abcam (Cambridge, UK). GAPDH (sc-47724), p-β-catenin (sc-16743-R), CCND1 (sc-8396), C-Myc (sc-70465), MMP1 (sc-21731), TWIST (sc-6269), ZO-1(sc-10804), ZO-2(sc-11448), Occludin (sc-133256) and VEGFB (sc-13083) antibodies were purchased from Santa Cruz (Insight Biotechnology Limited, Middlesex UK). E-Cadherin (AF748) and VEGFD (MAB286) antibodies were purchased from R & D Systems (Abingdon, Oxfordshire, UK). STAT3 (S5933), p-STAT3 (SAB4504541), IL-6(17901) and β-catenin (C2206) antibodies were purchased from Sigma-Aldrich (Gillingham, Dorset, UK). Anti-mouse (A5278), anti-rabbit (A0545) and anti-goat (A8919) secondary antibodies were obtained from Sigma-Aldrich (Gillingham, Dorset, UK).
2.5 Cell proliferation and cytotoxicity assay
Cell proliferation was assessed by AlamarBlue assay. Briefly, cells at a density of 3×103 cells/well were seeded into a 96-well plate and incubated at 37°C, 5% CO2 for 6 days. The medium was changed every 3 days during this period. At each designated time point (Day 0, 2, 4 and 6), the medium was aspirated and 100 μl of fresh medium containing 10 μl of AlamarBlue reagent (Serotec Ltd., Oxford, UK) was added to each well. Cells were then incubated for 3 hours at 37˚C. The fluorescence was measured using a fluorescence plate reader (Promega, Southampton, UK) with excitation at 525 nm and emission at 590 nm. The percentage of growth during the incubation period was then calculated against the fluorescence values at Day 0.
For cytotoxicity assay, 8×103 cells per well were seeded into a 96-well plate in the medium containing 1% FBS. After cells were starved overnight, medium was replaced with different concentrations of paclitaxel (Sigma-Aldrich, UK) and treated for 48 h, cell viability was then assessed by AlamarBlue assay as described above.
2.6 Scratch wound assay
Cells were seeded into a 24-well plate at a density of 2×105 cells/well and grown to reach confluence. The cell monolayer was then scratched using a 1 ml pipette tip to generate an artificial wound. After washed twice with phosphate buffered saline (PBS), Normal medium was added with 1 ml per well. Migration of cells to wounding gap was monitored by an EVOS® FL imaging system (Life technologies, Carlsbad, CA, USA) with a 4X objective every 2 hours for 24-48 hours. The percentage of closed area in the wounding gap was measured and normalized using the data from 0 h using ImageJ software.
2.7 Matrigel invasion assay
A transwell Matrigel assay was used to assess the invasive ability of cells in vitro. Briefly, transwell inserts (8 μm pore size) for a 24-well plate were pre-coated with 100 μl of 0.5 mg/ml Matrigel (BD Bioscience, Oxford, UK) for 1 h at 37˚C. Subsequently, 2×104 cells (MDA-MB-231) or 2×105 cells (MCF7) were seeded into each upper chamber in 150 μl plain medium, and 650 μl normal medium was added to the lower chamber. After incubation for 48 h, cells on the top side of inserts were removed with a cotton swab. Chambers were then fixed with 4% formalin for 30 mins, and stained with 1% crystal violet for 30 mins before rinsing with PBS. The numbers of invasive cells (cells under the inserts) were determined by counting under a microscope (at least five counts per experimental setting).
2.8 Cell-matrix adhesion assay
A 96-well plate was coated with Matrigel (10 μg/well) for 2h at 37°C to allow extracellular matrix protein binding to the cell culture surface. Cells at a density of 2×104 cells/well were added and incubated for 1 h, followed by washing with PBS twice. Adhesive cells were then fixed with 4% formalin and stained with 1% crystal violet before rinsing with PBS. The number of attached cells was determined by counting under a microscope (at least five counts per experimental setting).
2.9 Tube formation assay mediated by tumor conditioned medium
Stable cancer cells containing Tim-3 overexpression or Scr control vectors were cultured to reach 70-80% confluency in complete medium. Medium was then replaced with serum-free medium after washed twice with PBS. The supernatant (conditioned medium) was then collected after cultured for 24 h, filtered with a 0.22μm filter (Millipore) and stored at -80˚C for further use. HUVECs were used for tube formation after three to four passages. A pre-chilled 96-well plate coated with a thin layer of the Matrigel (50 μl/well) was incubated to polymerize at 37°C for 1 h. 2×104 HUVECs resuspended in 200 μl conditioned medium were seeded to each well and incubated at 37°C, 5% CO2 for 16 h. Five random views were chosen to evaluate tube formation ability by counting the total segment length using ImageJ software.
2.10 Electric cell-substrate impedance sensing (ECIS) assay
The ECIS assay was employed to assess cell migration as described previously [26]. Briefly, The ECIS Zθ system with a 96W1E+ array plate (Applied Biophysics, Inc., Troy, NY, USA) was applied for the measurement of cell functions including initial attachment, spreading and tight junction (TJ) of the cells. The 96W1E+ array plate was stabilized using the normal medium for 2 h in advance. 5×104 cells per well were then seeded and cultured for 24 hours. Each group was set up at least six repetitions. The resistance across the array was recorded at multiple frequencies by the system.
2.11 Transepithelial resistance (TER) and paracellular permeability (PCP)
TER was used to assess the integrity of tight junction dynamics in cell culture models of epithelial monolayers as a widely accepted quantitative technique. An EVOM voltohmmeter (World Precision Instruments, Aston, Herts, UK), equipped with STX2 chopstick electrodes (World Precision Instruments, Inc., Sarasota, FL, USA) was used to measure the TER. Briefly, 5×104 cells were seeded into a 0.4 μm pore size insert (Greiner Bio-One Ltd, Stonehouse, UK) and allowed to reach full confluence. Following the replacement with fresh medium, electrodes were placed at the upper and lower chambers and resistance were measured with the Volt-Ohm meter. Inserts containing cell-free medium were set as blank control. After TER was recorded, the medium in upper chamber was replaced with normal medium containing 0.2 mg/ml fluorescein isothiocyanate (FITC)-dextran 10 kDa. 50 μl of medium from outside of the insert was transferred into a black 96-well cell culture microplate (Greiner Bio-One) in duplicate every 2 hours for 10 hours. Basolateral dextran passage was analysed with a GloMax®-Multi Microplate Multimode Reader (Promega UK Ltd., Southampton, UK) at excitation 490nm and emission 510-570nm. Measurement of dextran-indicated PCP was then normalized to the 0 h via subtraction.
2.12 Statistical analysis
Data values are presented as mean ± SD unless stated otherwise. GraphPad Prism (Version 7.0, GraphPad Software, San Diego, CA) or R language (version 3.6.3. https://www.R-project.org) were used for statistical analysis. Two-group comparisons were analysed using two-sided t-test when data were normally distributed or Mann-Whitney U test when not normally distributed. For multiple groups, if data passed a Shapiro-Wilk normality test, their differences were then analysed using ANOVA followed by the post hoc Tukey HSD test for pairwise comparison; otherwise, the Kruskal-Wallis test was used. Differences were considered statistically significant when p-values were less than 0.05. Experiments were repeated 2-4 times unless otherwise stated. The statistical significance in the figures was shown as follows: *p<0.05; **p<0.01; ***p<0.001.