Cell culture
AGS was purchased from the Korean Cell Line Bank (KCLB#21739; Seoul, South Korea). AGS cells were seeded at a density of 2 × 105 cells/mL in a T25 flask and cultured routinely in RPMI 1640 medium (Welgene, Daegu, Korea) supplemented with 10% fetal bovine serum (Thermo Fisher Scientific, Waltham, MA, USA) and 1% antibiotics (Thermo Fisher Scientific). An AGS-derived 5-FU-resistant cell line (AGS-R) was established via long-term culture of AGS cells in gradually increasing concentrations (0 to 5 μM over a period of 1 year) of 5-FU (Sigma-Aldrich, St. Louis, MO, USA). Microscopic images of the cells were captured at 100´ magnification using an Olympus CKX31 microscope.
Cell viability assay
After the treatment of both AGS and AGS-R cells with various concentrations of 5-FU, the cell viability assay was performed using the Cell Counting Kit-8 (Enzo Life Sciences, Farmingdale, NY, USA), according to the manufacturer’s protocol. First, AGS and AGS-R cells were seeded in 96-well plates at a density of 5 × 103 cells/well and cultured in a CO2 incubator for 24 h. Subsequently, both cell lines were treated with various concentrations of 5-FU (0, 1, 3, 5, 10, and 20 µM) for 24, 48, and 72 h. Finally, the absorbance of the plates was read at 450 nm using a spectrophotometer.
To examine whether β-catenin is involved in the induction of resistance against 5-FU, the cell viability assay was repeated after an initial treatment of both cell lines with ICG-001 (Selleckchem, Houston, TX, USA), which antagonizes β-catenin/TCF-mediated transcription. The cells were treated with various concentrations of ICG-001 (0, 0.5, 1, and 2 µM) for 24 and 48 h.
Quantitative reverse transcription-polymerase chain reaction (qRT-PCR)
Total RNA was isolated from AGS and AGS-R cells treated with 5-FU for 72 h. Subsequently, DNase digestion and other clean-up procedures were performed using the RNAspin Mini RNA Isolation Kit (GE Healthcare Life Science, Pittsburgh, PA, USA), and the purity and yield of RNA were analyzed using a NanoDrop spectrophotometer (NanoDrop Tech, Wilmington, DE, USA). Thereafter, cDNA was synthesized using a cDNA synthesis kit (ELPIS Biotech, Daejeon, South Korea) with 1 μg of the extracted total RNA, according to the manufacturer’s instructions. TaqMan Gene Expression Assay kits (Applied Biosystems PCR 7500; Thermo Fisher Scientific), which are based on pre-validated assays with specific primers and probes for each gene, were used for cDNA quantification of the thymidylate synthase (TS) gene (TaqMan Gene Expression Assay ID: [TS (TYMS)], Hs00426591_m1) and an internal reference gene (GAPDH; TaqMan Gene Expression Assay ID: Hs99999905_m1). TaqMan Universal PCR Master Mix was used to carry out real-time RT-PCR (Thermo Fisher Scientific). The PCR was performed under the following conditions: 10 min at 95°C, followed by 40 cycles for 15 s at 95°C and 1 min at 60°C, in the StepOne System (Thermo Fisher Scientific).
Western blotting
Whole cell lysates were prepared using radioimmunoprecipitation assay buffer (25 mM Tris-HCl, pH 7.6; 150 mM NaCl; 1% NP-40; 1% sodium deoxycholate; and 0.1% SDS) with a protease and phosphatase inhibitor cocktail (Thermo Fisher Scientific). Thereafter, total protein was extracted from AGS and AGS-R cells treated with 5-FU for 72 h. The total protein lysates (40 μg) were loaded into each lane, size-fractionated by sodium dodecyl sulfate–polyacrylamide gel electrophoresis, and transferred onto polyvinylidene difluoride membranes. Subsequently, the membranes were blocked in Tris-buffered saline-Tween 20 (TBST) containing 5% skim milk for 1 h, and then incubated overnight with the primary antibodies at 4°C. After washing thrice with TBST, the membranes were incubated with the secondary antibodies, namely, horseradish peroxidase-conjugated anti-rabbit IgG (developed in goat) or anti-mouse IgG (developed in horse) (#7074 and #7076, respectively, Cell Signaling Technology). Finally, the immunoblots were treated with enhanced chemiluminescence reagents and visualized using an LAS-4000 Mini camera (Fujifilm, Tokyo, Japan). All primary antibodies were purchased from Cell Signaling Technology (Danvers, MA, USA); the antibodies used were against β-actin (D6A8, #8457), TS (D5B3, # 9045), protein kinase B (AKT) (92G2, #2978), phosphor-AKT (p-Akt, Thr308) (D25E6, #13038), C-myc (D84C12, #5605), cyclin D1 (92G2, #5605), α-tubulin (11H10, #2125), lamin B1 (D9V6H, #13435), signal transducer and activator of transcription 3 (STAT3) (124H6, #9139), phosphor-STAT3 (Tyr705) (D3A7, #9145), Notch intracellular domain (NICD; cleaved notch1) (Val1744) (D3B8, #4147), GLI1 (C68H3, #3538), β-catenin (D10A8, #8480), and nonphospho (active) β-catenin (Ser33/37/Thr41) (D13A1, #8814).
To investigate the expression of β-catenin/active β-catenin in the nucleus and cytoplasm, the nuclear and cytoplasmic extracts were purified using NE-PER Nuclear and Cytoplasmic Extraction Reagents (Thermo Fisher Scientific).
Luciferase assay
For electroporation, AGS and AGS-R cells were seeded at a density of 1 × 105 cells/0.5 mL in 24-well plates with serum-free RPMI. The cells were serum-starved for 16 h, and then co-transfected with pGL4.49 (Promega, Madison, WI, USA) and pRL-TK constructs (Promega) using jetPRIME transfection reagent (Polyplus transfection, NY, USA). The pGL4.49 vector contains eight copies of a T-cell factor/lymphoid enhancer factor response element that drives the transcription of the firefly luciferase reporter gene luc2p. The pRL-TK vector provides the constitutive expression of Renilla luciferase, and serves as a control reporter vector. After incubation for 24 h, the luciferase assay was performed with both cell lysates using the DUAL-GLO Luciferase Assay System (Promega), according to the manufacturer’s instructions. Luminescence was measured using GLOMAX (Promega). The ratio of firefly to Renilla luciferase activities represented the transcriptional activity of β-catenin.
Flow cytometry
AGS and AGS-R cells (1 × 106/mL) were stained with FITC-conjugated anti-human CD44 antibody (Mouse IgG2b; BD Biosciences, San Jose, CA, USA) or the isotype control antibody (Mouse IgG2b; BioLegend, San Diego, CA, USA) on ice for 40 min. Thereafter, the cells were washed thrice with phosphate-buffered saline and analyzed on the NovoCyte Flow Cytometer (ACEA Biosciences, San Diego, CA, USA); the data were assessed using NoveExpress software.
Cell invasion and scratch assay
The cell invasion assay was performed using the Chemicon Cell Invasion Assay Kit (Merck, Temecula, CA, USA). This kit consists of 12 inserts, each of which contains an 8-μm pore-size polycarbonate membrane coated with a thin layer of ECMatrix. The invasive cells migrated through the extracellular matrix layer and were attached to the bottom of the membrane; these cells were fixed, stained with 0.1% crystal violet, and photographed under a microscope (Olympus CKX31).
For the cell scratch assay, AGS and AGS-R cells (3 × 105 cells/2 mL/well) were incubated in 6-well plates with small straight-line wounds that were made in confluent monolayers using an SPLScar scratcher (width 0.5 mm; SPL Life Sciences, Pocheon-si, South Korea). Thereafter, the cells were fixed, stained with Cell Stain solution (Merck, Temecula, CA, USA), and photographed under a microscope (Olympus CKX31).
siRNA transfection
Notch1 specific siRNA (siNotch1) and non-targeting siRNA (siNC) were purchased from Bioneer (Daejeon, South Korea). siRNA transfection was performed using the jetPRIME transfection reagent (Polyplus transfection), according to the manufacturer’s instructions. The control cells were transfected with non-targeting scrambled siRNA using the jetPRIME transfection reagent (mock). Further experiments were performed 72 h after transfection.
Statistical analyses
Statistical analyses were performed using SPSS version 18 (IBM Corp., Armonk, NY, USA). An independent t-test was used to compare the two cell lines. Statistical significance was set at P ≤ 0.05.