Animals. Wild type C57BL/6J and TLR7 knock out (B6.129S1-Tlr7tm1Flv/J) mice were purchased from The Jackson Laboratory (Bar Harbor, ME) and were 11–18 weeks of age at the time of experimentation. Adult, female Hartley guinea pigs were purchased from Charles River Laboratories (Wilmington, MA) and were 350–500 g at the time of experimentation. All animals were housed in filtered air rooms, given ad libitum access to food and water, and exposed to 12-hour light/dark cycle. Animals were treated in accordance with standards established by the United States Animal Welfare Act set forth by National Institutes of Health guidelines. The Institutional Animal Care and Use Committee at Oregon Health & Science University approved all experimental protocols.
In situ hybridization. Mice and guinea pigs were euthanized with an overdose of pentobarbital. Animals were perfused with PBS and tissues were dissected and fixed in 10% neutral buffered formalin for 16–24 h at room temperature (RT). Paraffin sections (5 µm) and tissue blocks were stored at 4 °C in a desiccator. The RNAscope in situ hybridization assay (Advanced Cell Diagnostics, San Francisco, CA) was followed per kit instructions with a 15 min incubation in the RNAscope Target Retrieval reagent and a 30 min incubation in the RNAscope Protease Plus reagent (Advanced Cell Diagnostics, 322330). RNAscope probes (mouse TLR7 415411, mouse piptidylprolyl isomerase B (Ppib) positive control 313911, guinea pig TLR7 563131, guinea pig Ppib positive control 471531, dihyrdodipicolinate reductase (DapB) negative control 310043, Advanced Cell Diagnostics) were detected with the RNAscope 2.5 HD Detection Reagents-RED kit (Advanced Cell Diagnostics, 322360). Slides were counterstained with Gills Hematoxylin (1:1 with water, American MasterTech Scientific) and imaged on a Zeiss Apotome Microscope (Oberkochen, Germany).
For in situ hybridization on cultured nodose and jugular ganglia, ganglia were dissociated from naïve guinea pigs as previously described [27]. Cells were plated on laminin (Life Technologies, Frederick, MD) coated glass-bottom fluorodishes (World Precision Instruments, Saratoga, FL) and cultured in media consisting of 1:1 F12:DMEM media (Thermo Fisher Scientific, Waltham, MA), 100 U/ml penicillin, 100 µg/ml streptomycin, 10 µg/ml guinea pig transferrin (BP25445, FisherScientific), 100 ng/ml nerve growth factor 2.5S (NG009, Sigma-Aldrich, St. Louis, MO), and 20 µM camptothecin (Sigma-Aldrich, St. Louis, MO). After 4 days, cells were fixed and processed for RNAscope in situ hybridization following the Advanced Cell Diagnostics Technical Note for Cultured Adherent Cells. Cells were incubated with guinea pig-specific probes for TLR7 RNA (Advanced Cell Diagnostics, guinea pig TLR7 563131), and the probes were detected with the RNAscope 2.5 HD Detection Reagents-RED (Advanced Cell Diagnostics, 322360) kit. Cells were coverslipped and imaged on Nikon Eclipse Ci microscope (Tokyo, Japan) using an Andor Zyla camera at 100X (Nikon Plan Flour 1.3NA).
Immunohistochemistry. Wild type mice, TLR7 KO mice, and guinea pigs were euthanized with an overdose of pentobarbital and perfused with PBS. Dorsal root ganglia (DRG), vagal ganglia (containing the nodose and jugular ganglia) and spleens were collected for testing TLR7 in situ hybridization probes. Tissues were fixed in 10% neutral buffered formalin for 16–24 h at RT, then washed and prepared for paraffin sectioning. Slides were dewaxed with xylene and rehydrated with a decreasing series of alcohols to water.
For TLR7 immunohistochemistry, all slides were treated for 10 min in a 90 °C water bath with antigen unmasking solution (Vector Laboratories, Burlingame, CA) and then for 10 min in 3% hydrogen peroxide made in 4 °C methanol to block endogenous peroxidase. After washing, non-specific binding was blocked with 10% normal goat serum (Vector Laboratories) made in PBS containing 0.05% Tween-20 (PBST) for 1 h at RT. Slides were incubated overnight at 4 °C in a humidified chamber with either anti-TLR7 polyclonal antibody (1:1000, rabbit, Novus cat. # NBP2-24906.) or anti-TLR7 monoclonal antibody (1:250, rabbit, Abcam cat. # ab124928) made in blocking buffer. A serial section did not receive primary antibody to determine background signal. Slides were then washed, incubated for 1 h at RT with a biotinylated secondary antibody (1:400, goat anti-rabbit, Vector Laboratories), and then 30 min with avidin biotin complex (Vector Laboratories). Slides were reacted with diaminobenzidine peroxidase (DAB, Vector Laboratories). Slides from TLR7 KO and wild type mice were reacted with DAB for the same duration. Slides were rinsed, counterstained with Gills Hematoxylin (1:1 with water, American MasterTech Scientific), mounted, and imaged on a Zeiss Apotome Microscope.
For immunohistochemistry following in situ hybridization, slides were incubated in 3% hydrogen peroxide made in water for 10 min at RT to quench any remaining peroxidase activity from the in situ hybridization assay and then rinsed in water and PBST. To detect ionized calcium binding adaptor molecule 1 (Iba1), a marker for macrophages/microglia, non-specific binding was blocked with 10% normal rabbit serum (Vector Laboratories) made in PBST for 1 h at RT, and then slides were incubated with an anti-Iba1 antibody (1:2500, goat polyclonal, Abcam 5076, Cambridge, United Kingdom) overnight in blocking buffer at 4 °C in a humidified chamber. Slides were then processed similarly as described above using a biotinylated rabbit anti-goat secondary antibody (1:400, Vector Laboratories). To detect protein gene product 9.5 (PGP 9.5), a pan-neuronal marker, non-specific binding was blocked with 10% normal goat serum (Vector Laboratories) made in PBST for 1 h at RT, and then slides were incubated with an anti-PGP 9.5 antibody (1:1000, rabbit polyclonal, Millipore AB1761-I, Burlington, MA) overnight in blocking buffer at 4 °C in a humidified chamber. A goat anti-rabbit IgG H + L Alexa Flour 647 secondary antibody (1:1000, Thermo Fisher Scientific) was used for fluorescence detection of the antibody (1 h at RT) and then slides were mounted with Vectashield (Vector Laboratories) containing 4’,6-diamidino-2-phenylidndole (DAPI) to label nuclei. All slides were imaged on a Zeiss Apotome Microscope.
Wheat germ agglutinin (WGA) and flow cytometry. Guinea pigs were sedated with 15 mg/kg ketamine and 2.5 mg/kg xylazine (i.m.). WGA Alexa Fluor 555 (Thermo Fisher Scientific) was diluted in sterile PBS such that 250 µl containing 0.25 mg WGA was delivered to guinea pigs by intranasal administration. Three days after WGA administration, guinea pigs were euthanized with an overdose of pentobarbital. DRG and vagal ganglia were aseptically isolated taking care to avoid extended exposure to bright lights. Some ganglia were quickly checked for WGA uptake by viewing whole mounted ganglia at 10x on an Nikon Eclipse Ci microscope and imaged with an Andor Zyla sCMOS camera (Oxford Instruments, Abingdon, United Kingdom) (Fig. 3C). The nodose and jugular ganglia were separated and dissociated as previously described [27]. After dissociation, cells were resuspended in Hanks Balanced Salt solution (pH 7.4). Cells were sorted on BD Influx cell sorter (Becton Dickinson, Franklin Lakes, NJ), first by forward and side scatter to remove debris and then by pulse width to exclude cell doublets. Cells were then sorted by a 488 nm and 555 nm filter to gate for cells that had high 555 expression (WGA+), avoiding autofluorescent cells that had similar 488 and 555 signal. Gating parameters were established using cells isolated from guinea pigs that did not receive WGA. WGA + cells were sorted into a microcentrifuge tube and RNA was isolated using the RNeasy Micro kit (Qiagen, Germantown, MD).
Real time reverse transcriptase-polymerase chain reaction (real time RT-PCR). DRG, vagal ganglia, and brain were aseptically dissected. Guinea pig nodose and jugular ganglia were separated under a dissection microscope whereas mouse vagal ganglia, due to fusion of nodose and jugular ganglia in this species, were processed as a single sample. RNA was isolated using the RNeasy Mini Kit (Qiagen). cDNA was generated from the RNA isolated from whole tissues or from WGA + cells using Superscript III Reverse Transcriptase (Thermo Fisher Scientific) and amplified using a Veriti 96-well Thermal Cycler (Applied Biosystems, Foster City, CA). Guinea pig TLR7 (5’ GGCTGACCTTTGTGCTTCTC and 3’ CACAATCACGTGGGTCTTTG) and Iba1 (5’ GAGTTCCTCTGCGACCAGAA and 3’ CCCCCAGCTTCTCCATCATC) primers were synthesized by Integrated DNA Technologies (Coralville, IA) and RNA expression was detected by real time RT-PCR (7500 Fast RT-PCR system, Applied Biosystems) using Sybr Green master mix (ThermoFisher). TLR7 and Iba1 PCR products were run on a 1.5% agarose gel and were determined to be the correct size (TLR7 = 222 base pairs and Iba1 = 148 base pairs). Bands were excised and DNA was isolated using the QIAquick Gel Extract kit (Qiagen). The DNA products were then sequenced by Sanger sequencing using an Applied Biosystems 3730xl 96-capilllary DNA analyzer to confirm the identity of the PCR product. Mouse TLR7 primers (cat. # Mm00446590_m1) and 18 s primers (cat. # 4352930E) were purchased from Applied Biosystems and amplified using TaqMan reagents by real time RT-PCR (7500 Fast RT-PCR system, Applied Biosystems). TLR7 expression was normalized using delta-delta CT.
Quantification of cellular nitric oxide. Neurons and support cells from dissociated ganglia were plated on laminin- (Life Technologies, Frederick, MD) coated glass-bottom fluorodishes (World Precision Instruments, Saratoga, FL) and cultured in media consisting of 1:1 F12:DMEM media (Thermo Fisher Scientific, Waltham, MA), 100 U/ml penicillin, 100 µg/ml streptomycin, 10 µg/ml guinea pig transferrin (BP25445, FisherScientific), 100 ng/ml nerve growth factor 2.5S (NG009, Sigma-Aldrich, St. Louis, MO), and 20 µM camptothecin (Sigma-Aldrich, St. Louis, MO) for 48 hours. Cells were loaded with a nitric oxide detecting fluorophore (FL2A, Strem Chemicals) for 30 minutes followed by treatment with TLR7 agonist R837 (10 µM, Invitrogen) for an additional 30 minutes. Some cells were pre-treated with TLR7 antagonist IRS661 (100 µM, Integrated DNA Technologies), TLR7 antagonist control oligomer (100 µM, Integrated DNA Technologies), or the nitric oxide synthase antagonist L-NAME (100 µM, Sigma). Cells were imaged on a Nikon spinning-disk confocal microscope (20X, 1.3 NA) and cellular fluorescence was quantified within individual cell bodies using Image J. Experimental replicates represent the average of 10–20 individual cells per experimental condition.
H1N1 infection. Wild type male mice were anesthetized with ketamine (45 mg/kg) and xylazine (8 mg/kg) i.p. and infected by intranasal administration (25 µL) of influenza A virus subtype H1N1 (ATCC A/PR/8/34 strain, 1e5 TCID50 Units) or mock-infected with PBS vehicle. Viral stocks were grown in rhesus monkey kidney (RMK) cell monolayers, purified by sucrose density centrifugation, and titered in RMK cells. Mice were euthanized by an overdose of pentobarbital (150 mg/kg i.p.) 4 days later. The right lung and left vagal ganglia were flash frozen for RNA isolation using the RNeasy Mini Kit (Qiagen). The right vagal ganglia and spleen were fixed in 10% neutral buffered formalin at RT for 16–24 h for in situ hybridization assays.
Quantification of H1N1 RNA in lung. Primers for H1N1 were synthesized by Integrated DNA Technologies (Coralville, IA) as follows: 5’ CATCCTGTTGTATATGAGGCCCAT and 3’ TTCGCAGATGCGACGTCAGG. H1N1 titers from whole lung were quantified by real time RT-PCR (7500 Fast RT-PCR system, Applied Biosystems) using an H1N1 TCID50 standard curve derived from serial dilutions of cDNA generated from the H1N1 viral stock solution. Samples were normalized for 18S cDNA.
Analysis of RNAscope in situ hybridization. Images of H1N1 infected or mock infected mouse spleen and vagal ganglia labeled with RNAscope in situ probes for TLR7 or Ppib (housekeeping gene) were imaged at 60x on the Zeiss Apotome Microscope. The same light intensity and exposure time was used to image H1N1 and mock infected tissue, but varied between the different tissues and probes to obtain optimal images for each tissue and probe. For the spleen, a 60x image was taken from 3 different portions from the same mouse, and for the vagal ganglia, multiple 60x images capturing the whole ganglia within a single section were obtained for each animal. Images were analyzed by ImageJ (version 1.52p, National Institutes of Health), where a color threshold was set to detect signal by the in situ probes. Each image was closely reviewed to ensure that the area detected by the set threshold and included in the analysis was true signal from an in situ probe. The area of TLR7 expression within 3 different pieces of spleen was normalized to the area of Ppib expression in a similar location in a serial section, to normalize for differences in RNA integrity between animals. For the vagal ganglia in each mouse, the total area of RNAscope signal was normalized to the total area of vagal ganglia analyzed, which included only the ganglia and not large nerve fibers passing through. Again, TLR7 expression in the vagal ganglia was normalized to Ppib expression detected in the same region of a serial section to control for differences in RNA integrity between animals.
Statistics. Comparison of mouse weights before and after infection, and cellular nitric oxide fluorescence, were analyzed by a one-way ANOVA with a Sidak post hoc test for multiple comparisons. Quantification of viral titers in the lungs and in situ hybridization labeling in the spleen and vagal ganglia of mock- and H1N1-infected mice were analyzed by a two-tailed unpaired T-test. All data was analyzed using GraphPad Prism (8.3.0, San Diego, CA). P values less than 0.05 were considered significant.