Alexander DH, Lange K (2011) Enhancements to the ADMIXTURE algorithm for individual ancestry estimation. BMC Bioinformatics 12: 246
AlmanzaPinzón MI, Khairallah M, Fox PN, Warburton ML (2003) Comparison of molecular markers and coefficients of parentage for the analysis of genetic diversity among spring bread wheat accessions. Euphytica 130 (1): 77-86
Chen J, Peng YL, Zhang SH, Zhuo CF, Luo F, Tang Y, Yang GT, Wang XC, Chen YJ, Lv QM, Hu YG (2017) Genetic diversity of parents of hybrid rice from upper Yangtze River. Chinese Journal of Applied & Environmental Biology 23(4): 595-601
Chen J, Qiu L, Tu SB, Luan L, Wang X, Long WB (2009) Genetic variation of three-line parents of indica hybrid rice detected with SSR markers. Chin J Appl Environ Biol 15 (5): 585-590
Chen LY, Lei DY, Tang WB, Deng HB, Xiao YH, Zhang GL (2015) Challenges and strategies of hybrid rice development in China. Hybrid Rice 30(5): 1-4
Cheng BS, Luo BX, Yang JY (2012) Analysis of genetic similarity among 44 parents of japonica hybrid rice by simple sequence repeats (SSR). Chinese Journal of Tropical Crops 33(9): 1625-1629
Duan SH, Mao JN, Zhu YG (2002) Genetic variation of main restorer lines of hybrid rice in China was revealed by microsatellite markers. Journal of Genetics and Genomics 29(3): 250-254
Frichot E, Francois O (2015) LEA: An R package for Landscape and Ecological Association studies. Methods in Ecology and Evolution 6: 925-929
Frichot E, Mathieu F, Trouillon T, Bouchard G and Francois O (2014) Fast and efficient estimation of individual ancestry coefficients. Genetics 196:973–983.
Fufa H, Baenziger PS, Beecher BS, Dweikat I, Graybosch RA, Eskridge KM (2005) Comparison of phenotypic and molecular marker-based classifications of hard red winter wheat cultivars. Euphytica145 (1): 133-146
Gao H, Xu Q, Zhong M, Xu ZJ, Sui GM (2019) A Neo-diversity group of Oryza Satival L. SSP. japonica in northeastern china evaluated by large-effect SNPs. Pak. J. Bot. 51(2): 583-600
He HH, Luo XJ, Zhu CL, He XP, Fu JR, Sun JL, Zhang HL, Li ZC (2006) Classification for some sterile lines and their restorers of Hhybrid rice with SSR markers. Acta Agronomica Sinica 32(2): 169-175
Hong RK, Jin SL, Tan YL, Wen JC, Xu HY, Guo A, Huang DJ, Zhang ZL, Tao GX, Chen LJ, Wang X, Li ZY, Tan XL (2009) Innovations advances of techiques and germplasm in CMS-D1 based on beeding of hybrid japonica rice. Southwest Chin J Agric Sci 22(4): 1170-1174
Jin CH, Gao MJ, Zhou GC, Quan DX, Meng WR, Piao HM (2014) Research Aadvance on restorer lines of japonica hybrid rice in northern China. Modern Agricultural Science and Technology (23): 63-64
Kumar S, Stecher G, Li M, Knyaz C, Tamura K (2018) MEGA X: Molecular evolutionary genetics analysis across computing platforms. Molecular Biology and Evolution 35: 1547-1549
Lin JR, Song XW, Wu MG (2012) Biological characteristics and heterosis utilization of four indica-japonica intermediate type restorer lines with wide compatibility. Chin J Rice Sci 26(6):656-662
Lin Z, Qin P, Zhang X, Fu C, Deng XW (2020) Divergent selection and genetic introgression shape the genome landscape of heterosis in hybrid rice. Proc Natl Acad Sci U S A 117(9): 4623-4631
Liu K, Muse SV (2005) PowerMarker: an integrated analysis environment for genetic marker analysis. Bioinformatics 21: 2128-2129
Liu SF, Chen Q, Hong GC, Jun HU, Qin XJ (2018) Research progress of cytoplasmic male sterility and fertility restoration in rice (Oryza sativa). Plant Physiology Journal 54(1):1-9
Peng ST, Wang HG, Wei XH, LV JZ, Zhang XL, Yuan XP, Yang WD (2008) SSR diversity and genetic structure of main male sterile lines of three-Line hybrid rice in China. Chin J Rice Sci 22(4): 365-369
Pu HC, Zhou ZL, Xu DY (2015) History and problems of three-line japonica hybrid rice development. Jiangsu Agric Sci 43(1): 74-77
Qiu FL, Zhuang JY, Hua ZT, Wang YR, Cheng SH (2005) Inspect of genetic differentiation of main parents of japonica hybrid rice in the northern China by simple sequence repeats(SSR). Chin J Rice Sci 19(02):101-104
Shen GW, Xu SK, Li HL, Shen GH, Wang L (2015) Progress and technical strategy of BT type japonica hybrid rice breeding. China Seed Industry (1): 9-11
Singh VK, Upadhyay P, Sinha P, Mall AK, Ellur RK, Singh A, Jaiswal SK, Biradar S, Ramakrishna S, Su ndaram RM, Ahmed I, Viraktamath BC, Kole C, Singh S (2011) Prediction of hybrid performance based on the genetic distance of parental lines in two-line rice (Oryza sativa L.) hybrids. Journal of Crop Science and Biotechnology 14: 1-10
Sui GM (2018) Research progress and development strategy of japonica hybrid rice. Liaoning Agric Sci (1): 51-55
Sun J, Liu D, Wang JY, Ma DR, Tang T, Gao H, Xu ZJ, Chen WF (2012) The contribution of inter subspecific hybridization to the breeding of super-high-yielding japonica rice in northeast China. Theor Appl Genet 125: 1149-1157
Tang X, Tan XL (2009) SSR fingerprint and genetic diversity of major parents of Dian-type japonica hybrid rice. Hybrid Rice 24(6): 54-58
Wang CH, Zhang YZ, Hua ZT, Xu ZJ, Zheng WJ, Zhao JM, Liu X, Wang H, Zhou YH (2009) Genetic basis of parents of japonica hybrid rice in the Northern China. Chin J Rice Sci 23 (5): 489-494
Wang K, Qiu FL, Paz MAD, Zhuang JY, Xie FM (2014) Genetic diversity and structure of improved indica rice germplasm. Plant Genetic Resources 12(2): 248-254
Wang SJ, Wan JM, Lu ZM (2006) Parental cluster analysis in indica hybrid rice (Oryza sativa L.) by SSR analysis. Acta Agron Sin 10: 1437-1443
Wang WS, Mauleon R, Hu ZQ, Chebotarov D, Tai SS, Wu ZC, Li M, Zheng TQ, Fuentes RR, Zhang F, Mansueto L, Copetti D, Sanciangco M, Palis KC, Xu JL, Sun C, Fu BY, Zhang HL, GaoYM, Zhao XQ, Shen F, Cui X, Yu H, Li ZC, Chen ML, Detras J, Zhou YL, Zhang XY, Zhao Y, Kudrna D, Wang CC, Li R, Jia B, Lu JY, He XC, Dong ZT, Xu JB, Li YH, Wang M, Shi JX, Li J, Zhang DB, Lee SH, Hu WS, Poliakov A, Dubchak I, Ulat VJ, Borja FN, Mendoza JR , Ali J, Li J, Gao Q, Niu YC, Yue Z, Naredo ME, Talag J, WangXQ, Li JJ, Fang XD, YinY, Glaszmann JC, Zhang JW, Li JY, Hamilton RS , Wing R, Ruan J, Zhang GY, Wei CC, Alexandrov N, McNally K, Li ZK, Leung H (2018) Genomic variation in 3,010 diverse accessions of asian cultivated rice. Nature 557(7703): 43-49
Wang YR, Qiu FL, Hua ZT, Dai GJ (2010) Relationship between indica-japoniea index of parents and hybrid yield and rice quality traits in japonica hybrid rice in Northern China. Chin J Rice Sci 24(2): 145-150
Xie FM, Guo LB, Ren GJ, Hu PS, Wang F, Xu JL, Li XQ, Qiu FL, MA Dela Paz (2012) Genetic diversity and structure of indica rice varieties from two heterotic pools of southern China and IRRI. Plant Genetic Resources 10(3): 186-193
Xie FM, Peng SB (2016) History and prospects of hybrid rice development outside of China. Chinese Sci Bulletin 61: 3858-3868
Xie LJ, Pan XJ, Duan M, Huang SJ (2015) Research progress and breeding strategies of sterile lines in japonica rice. Zhejiang Agric Sci 56(5): 625-628, 630
Xu ML, Jin ZX, Li XG, Zhang ZC, Liu HY, Zhang FZ, Zhao SY, Zhang HB (2009) Comparison of genetic distance among seven cultivars of japonica rice based on SSR and SRAP and its relationship with heterosis of yield traits. Molecular Plant Breeding 7(6): 1084-1092
Xu Q, Yuan XP, Wang S, Feng Y, Yu HY, Wang YP, Yang YL, Wei XH, Li XM (2016) The genetic diversity and structure of indica rice in China as detected by single nucleotide polymorphism analysis. BMC genomics 17: 53. DOI 10.1186/s12863-016-0361-x
Xu SL, Yan TZ, Zhong RC, Qin P, Qang K, Yang YZ (2017) Analysis on genetic differences between parents of two-line medium indica hybrid rice by SSR markers. Agricultural Science & Technology 18(10): 1800-1804
Yang ZY, Li ZB, Dong L, Zhu W, Hua ZT (2016) Development and prospect of hybrid japonica rice in China. China Sci Bull 61: 3770-3777
Zha RM, Yang ZL, Zhao FM, Zhong BQ, Peng T, Xie R, He GH (2007) Genetic difference changes of main restorer and sterile lines in different stages of hybrid rice (Oryza sativa spp. indica L.). Acta Agronomica Sinica 33 (4): 572-577
Zhang T, Yang J, Jiang KF, Cao YingJ, Yang L, Yang QH, Wan XQ, You SM, Luo J, Gao L, Li ZX, Zheng JK (2014) Genetic diversity of the main chinese three-line hybrid rice parents based on functional genetic markers related to yield. Sci Agric Sin 47(1):11-23
Zhao QY, Zhang YD, Zhu Z, Zhao L, Chen T, Zhou LH, Wang CL (2010) Genetic diversity of parental lines in japonica hybrid rice based on cluster analysis of SSR markers and phenotypic characters. Hybrid Rice 25(04): 68-74
Zhao QY, Zhu Z, Zhang YD, Zhao L, Chen T, Zhang QF, Wang CL (2009) Analysis on correlation between heterosis and genetic distance based on simple sequence repeat markers in japonica rice. Chin J Rice Sci 23(2): 141-147
Zheng WJ, Ma ZB, Zhao MZ,Xiao MG, Zhao JM, Wang CH, Gao H, Bai YJ, Wang H, Sui GM (2020) Research and development strategies for hybrid japonica rice. Rice 13: 36. https://doi.org/10.1186/s12284-020-00398-0