Cells and cell culture/co-culture conditions
Stable cells (vector-transfected and PRL-3-expressing cells) were established using LoVo cells (Guangzhou Cellcook Biotech Co. Ltd) as described previously.[26] G418 cells were purchased from Sigma (St Louis, MO, USA). Cells were maintained in RPMI 1640 (HyClone, Logan, UT, USA) with 10% fetal bovine serum (FBS; Gibco, Carlsbad, CA, USA) at 37°C in a humidified incubator with 5% CO2. The LO2 cell line (Guangzhou Cellcook Biotech Co. Ltd) was maintained in DMEM (HyClone, Logan, UT) containing 10% FBS. Co-culture analysis was performed in 6-well plates with transwell chambers (0.4-µm pore size, Corning, Canton, NY, USA). Cancer cells (1 × 105) were plated in the lower chamber of each well in 2000 µL of complete medium with 10% FBS and allowed to attach overnight. The next day, LO2 cells were plated at 5 × 104 cells per well in 1500 µL of complete medium in the upper chambers. The medium was replenished every 2 days. The PKC inhibitor GF109203X was obtained from Sigma. Recombinant human EGF protein was obtained from PeproTech (Rocky Hill, NJ, USA).
CRC samples
CRC samples were obtained from patients who were diagnosed with CRC and then underwent elective surgery at the Department of Gastroenteropancreatic Surgery, Sun Yat-sen Memorial Hospital, Sun Yat-sen University, between July 2006 and June 2010. The protocol was approved by the Ethics Committee of Sun Yat-Sen Memorial Hospital, China (Approve No.179). Seventy-five primary CRC samples (stage I, n = 12; stage II, n = 15; stage III, n = 25 and stage IV, n = 23) and 23 corresponding colorectal liver metastasis samples from stage IV patients were obtained from surgically resected specimens for immunohistochemistry.
Immunohistochemistry
Paraffin-embedded patient samples were obtained from Sun Yat-Sen Memorial Hospital. Colorectal tumor specimens were fixed in formalin and embedded in paraffin. After that, the tissue sections were deparaffinized in xylene for 10 min and then subjected to antigen retrieval by boiling in 0.01 M citric buffer (pH 6.0). Endogenous peroxidase activity in the samples was blocked with 3% hydrogen peroxide in PBS and 0.05% Tween 20 for 30 min. The samples were then washed with PBS and blocked for 30 min with 20% normal goat serum at room temperature, followed by incubation with primary antibodies against PRL-3, p50, p65 (Abcam, Cambridge, MA, USA), E-cad (Santa Cruz, California, CA, USA), p-EGFR and VEGF-A (Cell Signaling Technology, Cambridge, MA, USA) at a dilution of 1:100 in a humidified chamber overnight at 4°C. The next day, the sections were washed with PBS, incubated with peroxidase-conjugated secondary antibodies for 2 h at room temperature and then rinsed with PBS. Finally, the DAB Plus substrate staining system (Abcam, Cambridge, MA, USA) was used to stain the samples according to the manufacturer’s instructions. All tissue sections were counterstained with hematoxylin and mounted with aqueous mounting media. The tissue sections were scored quantitatively according to the percentage of positive cells and staining intensity. The intensity of staining was scored from 0-3 (I0, I1-3): 0 (no staining), 1 (weak staining = light yellow), 2 (moderate staining = yellow brown) and 3 (strong staining = brown). The proportion of the tumor stained at a particular intensity was recorded in 5% increments using a range of 0–100 (P0, P1–3). The final H score (range 0–300) was calculated for each intensity and proportion of the area stained (H score = I1×P1 + I2×P2 + I3×P3).
Western blot analysis
Cells were washed three times with cold PBS and lysed on ice with RIPA buffer containing 1% PMSF and a proteinase inhibitor cocktail. Sample protein concentrations were determined by Bradford assays.[26] Forty-microgram samples for each lane were boiled for 5 min in sample buffer. The denatured proteins were then separated by 10% or 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis and transferred onto polyvinylidene fluoride membranes. Nonspecific reactivity was blocked using 5% bovine serum albumin in a TBST buffer. The membranes were then incubated with the relevant primary antibodies overnight at 4°C. Following incubating with a horseradish peroxidase-conjugated secondary antibody at a 1:5000 dilution for 2 h at room temperature, the labeled proteins were visualized by chemiluminescence (American Bioscience, Piscataway, NJ, USA) western blotting detection reagents. Anti-GAPDH (mice, Abcam, Cambridge, MA, USA) was used to ensure equal amounts of protein were present for each sample. The protein amounts were estimated through densitometry as the ratio of the detected protein/GAPDH. Anti-vimentin, anti-EGFR, anti-Snail, anti-p-AKT, anti-AKT, anti- activated extracellular signal-regulated kinase (p-Erk1/2), anti-Erk1/2, anti-p-PKC, anti-PKC, anti-p-GSK-3β and anti-GSK-3β antibodies which were obtained from Abcam (mice, Cambridge, MA, USA). Incubations were substrate with ChemiDoc XRS+ imaging system (Bio-Rad Laboratories, Hercules, CA, USA) were used to detect immunoreactive bands.
Isolation of exosomes from medium and serum
Exosomes were isolated from cell culture medium by differential centrifugation. After removing cells and other debris by centrifugation at 300 × g and 3000 × g, the supernatant was centrifuged at 10,000 × g for 30 min to remove shedding vesicles and other larger-sized vesicles. Finally, the supernatant was centrifuged at 110,000 × g for 70 min (all steps were performed at 4°C); exosomes were collected from the pellet and re-suspended in PBS. Sr-exosomes were isolated by using an exosome isolation kit (Thermo, Waltham, MA, USA).
Luciferase assay
The reporter plasmid containing the predicted miR-203a-3p targeting regions was designed by Genescript (Nanjing, China). Part of the wild-type and mutated 3’-UTR of Src was cloned immediately downstream of the firefly luciferase reporter. A total of 2 mg of the β-galactosidase expression vector (Ambion) was used as a transfection control. For the subsequent luciferase reporter assays, 2 mg of the firefly luciferase reporter plasmid, 2 mg of the β-galactosidase vector and equal doses (200 pmol) of the mimics, inhibitors or scrambled negative control RNA were transfected into the prepared cells. At 24 h after transfection, the cells were analyzed by using a dual luciferase assay kit (Promega) according to the manufacturer’s instructions. Each sample was prepared in triplicate, and the entire experiment was repeated three times.
Invasion assays
Transwell chambers (BD Biosciences, Franklin Lakes, NJ, USA) were used to measure the ability of cells to invade in cell invasion assays. A total of 1 × 105 cells in 0.2 mL of serum-free RPMI 1640 medium were added to the upper chambers (with Matrigel [Collaborative Biomedical Products, Bedford, MA, USA]). The lower chambers contained 0.8 ml of medium with 10% FBS. After incubation at 37°C and 5% CO2 for 24 h, the cells that invaded to the lower chamber were fixed in 4% paraformaldehyde and stained with 0.1% crystal violet in methanol. The cell counts are expressed as the mean number of cells per field of view. Three independent experiments were performed, and the data are presented as the mean standard deviation.
Immunofluorescence analysis
Cells were grown to 50-70% confluence in glass-bottom dishes (Nest, Wuxi, China), washed three times with PBST, and fixed in 4% PFA. For immunofluorescence staining, the cells were incubated with primary antibodies against E-cadherin, Snail, or PRL-3 (mice, Abcam, Cambridge, MA, USA) at 4°C overnight. After thorough washing, staining with Alexa-Fluor-488 conjugated goat anti-mouse and Alexa-Fluor-555 conjugated donkey anti-rabbit secondary antibodies was carried out at room temperature for 60 min, followed by DAPI nuclear counterstaining for 10 min. Finally, the cells were washed three times with PBST and photographed under a laser confocal microscope (Zeiss LSM710, Oberkochen, Germany). The data were processed with Adobe Photoshop 7.0 software (Newton, MA, USA).
RNA isolation and real-time quantitative polymerase chain reaction (PCR)
Total RNA was extracted using TRIzol reagent (Bio-Rad Laboratories, Hercules, CA, USA), and cDNA was synthesized with Prime Script RT (Bio-Rad Laboratories, Hercules, CA, USA) from 500 ng of RNA according to the manufacturer’s protocol. Quantitative real-time PCR for VEGF (GAPDH was used an internal control) was performed using a Light Cycler 480 (Roche, Basel, Switzerland) and SYBR assay (Takara, Dalian, China). Band intensities were analyzed quantitatively using ImageJ software (NIH, Bethesda, USA).
Human miRNA arrays
For the secreted miRNA analysis, total RNA isolation was performed with the miRNeasy kit (Qiagen, Valencia, CA, USA) according to the manufacturer’s protocol. The concentration and purity of the isolated RNA were determined using a spectrophotometer, and the integrity of the RNA was verified using an Agilent Eukaryote Total RNA Nano Series II chip on an Agilent 2100 BioAnalyzer. miRNA expression profiling of the samples was performed using the Affymetrix GeneChip miRNA 4.0 array platform (Affymetrix, Santa Clara, CA, USA) at the Johns Hopkins Deep Sequencing and Microarray Core (http://www.microarray.jhmi.edu/) according to the manufacturer’s protocol. This array version covers all mature miRNA sequences.
Animals
Athymic nude mice were purchased from the Guangdong Provincial Medical Laboratory Animal Center, animal experiments were followed the NIH guidelines (NIH Pub. No. 85–23, revised 1996), and were approved by Animal Ethical and Welfare Committee of Sun Yat-sen University, and were performed according to the arrived guidelines 2.0. Mice were sacrificed by cervical dislocation in anaesthetized condition.
Xenograft mouse model
Athymic nude mice (BALB/c nu/nu, 6-week-old females) were used for liver metastasis assays via intrasplenic injection. A total of 200 μL of LoVo-P (PRL-3 stably transfected into LoVo cells) or LoVo-C (Control vector stably transfected into LoVo cells) cells at a concentration of 1 × 107 cells/mL was injected into the spleens of nude mice (n = 6 per group). The mice were housed in pathogen-free environments; they were checked, and data were recorded every 3 days. All animals were sacrificed on day 36, which were euthanized by an intraperitoneal injection of excessive pentobarbital. Livers and spleens were resected and photographed. For immunohistochemical staining, the livers were fixed in 4% paraformaldehyde and stained as described above.
Statistical analysis
Statistical analyses were performed using 18.0 SPSS software (SPSS, Chicago, IL, USA). All data are presented as the mean ± SD. Student’s t-test was used to compare two independent groups of data. One-way analysis of variance (ANOVA) was used to analyze the significance among groups. Statistical tests for data analysis also included Fisher’s exact and chi-square tests. Bivariate correlations between study variables were calculated by Spearman’s rank correlation coefficients. P values < 0.05 were considered statistically significant.