Reagents
Herbal melanin (HM) was extracted from Nigella sativa L. seed coats that were purchased from a local public herbarium in Riyadh (Saudi Arabia). HM was prepared, analyzed and characterized as previously described in [33, 34]. HM was well solubilized in distilled water and the presence of endotoxins in the HM solution was below the detection level, using a fluorogenic endotoxin test (Lonza Verviers SPRL, Verviers, Belgium). Culture media and reagents were procured from Gibco® (Thermo Fisher Scientific Inc., Waltham, MA, USA). Lipopolysaccharides (LPS, purified from E. Coli) and dimethyl sulfoxide (DMSO) were provided by Sigma-Aldrich Corp (St. Louis, MO). COX-2 specific NS-398 pharmacological inhibitor (#sc-200604) was purchased from Santa Cruz Biotechnology, Inc. (Dallas, TX). TLR4 signaling TAK242 pharmacological inhibitor (#6587/5) was procured from Tocris Bioscience™ (Bristol, UK).
Cell culture and treatment
The human gastric cancer cell line AGS (#CRL-1739™) was purchased from the American Type Culture Collection (Manassas, VA, USA). The AGS cells were cultured in complete medium composed of Dulbecco's Modified Eagle's Medium (DMEM) supplemented with 10% fetal bovine serum, 2 mM L-glutamine and 1% antibiotics (100 mg/mL streptomycin, 100 IU/mL penicillin). The cells were cultured at 37°C in a humidified 5% CO2-incubator. Reaching 80-90% confluence, the cells were trypsinized and split in a ratio of 1:3 for each passage. Between passage 3 and 8, the cells were used for downstream applications.
The cells were treated with either LPS tested at 10 mg/mL, dose reported to exhibit in vivo gastroprotective effects [42], or with various concentrations (5-10-20 mg/mL) of HM at different incubation time periods (4-24-48-72 h).
Protein sample preparation and Western blot technology
The AGS cells (5×105 cells) were seeded in complete medium in 12-well plates. The next day, the cells were incubated in the absence (the Control) or in the presence of either 10 mg/mL LPS or 5-10 and 20 µg/mL of HM, for different incubation time periods (24, 48, and 72 h). The cells were then trypsinized, washed and centrifuged at high-speed. The cell pellet was lysed using the NP40 lysis buffer (Invitrogen, Carlsbad, CA, USA) and the extracted protein samples were estimated using the Invitrogen Qubit™ Protein Assay kit according to the manufacturer’s instructions. The Western blot technology and analysis were done as described in [43] for the detection of COX-2, IL-6, TLR4, phospho-p65 NFkB, and total p65 NF-kB using goat anti-COX-2 antibody (#AF4198, R&D systems, Minneapolis, MN, USA), rabbit polyclonal anti-IL-6 antibody (#TA328217, OriGene Technologies Inc., Rockville, MD, USA), rabbit monoclonal anti-TLR4 antibody (#ab13867, Abcam, Cambridge, UK), rabbit monoclonal phospho-p65 (Ser 529) NF-kB (#44711G, Invitrogen, Thermo Fischer Scientific) and mouse monoclonal anti-p65 NF-kB (#sc-8008, Santa Cruz Biotechnology), respectively. Mouse monoclonal anti-GAPDH (#ab8245, Abcam) and rabbit monoclonal anti-a-Tubulin (#ab13867, Abcam) antibodies were used for the detection of the housekeeping proteins glyceraldehyde 3-phosphate dehydrogenase (GAPDH) and a-Tubulin, used as loading controls. The Western blots were scanned and analyzed using an Odyssey CLx Scanner (LI-COR Biosciences, Lincoln, NE, USA) and ImageJ software (https://imagej.nih.gov/ij/download.html).
Enzyme-Linked Immunosorbent Assay (ELISA)
The AGS cells (1× 106) were seeded in complete medium in 12-well plate. The next day, the cells were incubated in the absence (the Control) or in the presence of either 10 mg/mL LPS or 5-10 and 20 µg/mL of HM, for different incubation time periods (4, 24, 48, and 72 h). The levels of PGE2 and IL-6 secreted in the supernatant were determined by ELISA. Human Prostaglandin E2 ELISA kit (#ADI-900-001, Enzo Life Sciences Inc., Farmingdale, NY, USA), R&D systems Prostaglandin E2 Assay Parameter™ Assay kit (#KGE004B) and the human IL-6 Immunoassay Quantikine ELISA kit (#D6050, R&D systems) were used following the manufacturers’ instructions. The untreated cells, cultured in complete medium, were used as controls. Triplicate readings for each standard, control and sample were recorded as previously described in [33] and measured using a Molecular Devices SpectraMax® Plus 384 microplate reader.
RNA extraction and RT-qPCR
Total RNA extraction was carried out from the untreated and treated cells (1× 106) using the Qiagen RNeasy Mini Kit (Qiagen Inc., Fisher Scientific, Pittsburg, PA, USA) according to the manufacturer’s protocol. The RNA extract was reverse-transcribed to cDNA, and RT-qPCR was performed as previously described in [38]. The primer pair sequences (Invitrogen, Thermo Fisher Scientific) used were 5'-AGATCATCTCTGCCTGAGTATCTT-3' (forward) and 5'-TTCAAATGAGATTGTGGGAAAAT-3' (reverse) for human COX-2 gene; 5′-GAA GCT GGT GGC TGT GGA-3′ (forward) and 5′-TGA TGT AGA ACC CGC AAG-3′ (reverse) for human TLR4 gene. For the human MUC4 gene, the primer pair sequences (Macrogen Inc., Seoul, South Korea) used were 5'-GCTTACTTCAGATGCGATG-3' (forward) and 5'-GTCGAGTTTCATGCTCAGG-3' (reverse). The gene expression levels were monitored using an Applied Biosystems™ 7500 Real-Time PCR System (Thermo Fisher Scientific, Waltham, MA, USA) and were detected, calculated and normalized to the expression of the housekeeping gene GAPDH, as described previously in [38].
Immunofluorescence staining
The AGS cells (5×103 cells) were seeded on a Nunc® Lab-Tek™ II chambered cover glass. The next day, the cells were exposed to either 10 mg/mL HM or 10 mg/mL LPS at different incubation time periods (24, 48 and 72 h). After the incubation, the cells were rinsed with PBS, then fixed for 30 min at room temperature with 4% formaldehyde diluted in PBS, and the membrane permeabilization was done using 0.1 % Triton X-100 in PBS for 10 min, at room temperature. For COX-2 detection, the cells were mixed with either Santa Cruz Biotechnology fluorescein isothiocyanate (FITC)-conjugated mouse IgG1 (#sc-2855, used as a negative control, data not shown) or FITC-conjugated anti-human/mouse COX-2 antibody (#sc-19999). The immunofluorescence staining was captured using LSM780 confocal scanner lasing microscope (Carl Zeiss Microscopy GmbH, Jena, Germany).
TLR4 signaling and COX-2 generation blockade
To investigate whether HM acts through TLR4 signaling activation and COX-2 generation for the stimulation of IL-6 production/secretion and of PGE2 secretion, the AGS cells were treated with TAK242 and NS-398, used as specific pharmacological inhibitors of TLR4 signaling and COX-2, respectively. Briefly, the AGS cells (1× 106) were seeded in complete medium in a 12-well plate. The next day, the medium was renewed with 1 mM TAK242, 100 mM NS-398 (both were reconstituted in DMSO and concentration was fixed from optimization) and with 1% DMSO (corresponding to the highest pharmacological inhibitor concentration tested), used as a negative control. After 2 h incubation, the cells were exposed to either 10 mg/mL of HM or LPS for a further 72-h incubation, followed by supernatant collection for ELISA and protein extraction for Western blot technology.
Statistical analysis
All the data are expressed as mean ± standard deviation (SD) based on three independent experiments. A one-way ANOVA test was used for comparison of the two groups. The generalized estimating equations (GENMOD procedure) from SAS software was applied to compare the protein expression level between and within each treatment at the various exposure times. Each pairwise comparison was performed using a post-hoc Tukey test. Values of p < 0.05 were considered significant.