In Denmark, all residents are assigned a unique 10-digit civil personal registration number (CPR number) enabling linkage of different Danish registries on an individual level.[3] For this study, we used information from four Danish nationwide registries. The Danish Vaccination Register (DVR) holds data on vaccinations administered to individuals, including both privately purchased and free-of-charge vaccinations. Since November 15, 2015, all vaccinators have been obliged to register vaccines in this registry. From DVR, information on vaccination with PPV23, the 7- and 13-valent pneumococcal conjugate vaccines (PCV7 and PCV13, respectively), and influenza vaccines was obtained by use of Anatomical Therapeutic Chemical (ATC) classification codes (Supplementary Table 1). Information on IPD, defined as the detection of Streptococcus pneumoniae from the blood, cerebrospinal fluid, or other normally sterile sites, was obtained from the Danish Microbiology Database (MiBa).[4] This national database contains real-time information on all microbiological laboratory test results from the departments of clinical microbiology.[4] The Danish National Patient Registry (DNPR) has collected information on all admissions to non-psychiatric hospitals since 1977, and on contacts to outpatient clinics and emergency departments since 1995.[3] One primary and one or more optional secondary diagnoses are provided for each hospital-contact the patient has, and coded according to the International Classification of Diseases, 10th revision (ICD-10).[3] From DNPR, we obtained information on comorbid conditions[5] in the five years prior to date of study entry, and computed a comorbidity score for each individual by use of the Charlson Comorbidity Index: 0 (low), 1–2 (moderate), and ≥ 3 (high). The Danish Civil Registration System (CPR) holds information on date of birth, sex, migration, and date of death for all Danish residents.[3]
All individuals ≥ 65 years who were residing in Denmark between June 15, 2020 and September 18, 2021, were identified from the CPR. Since those who have had PPV23 administered within 6 years are expected to be at lower risk of developing IPD, individuals vaccinated with PPV23 within 6 years prior to the date of study entry were excluded. Furthermore, individuals with IPD before study entry were excluded due to an increased risk of subsequent IPD. The study population comprised of the remaining ≥ 65 year olds residing in Denmark. Figure 1 shows the derivation of the analysis sample.
The study population was characterised according to sex, age, prior receipt of PCV7, PCV13, and influenza vaccine, comorbidity score, and selected individual comorbidities (myocardial infarction, chronic pulmonary disease, diabetes, renal disease, cancer, and congestive heart failure). All individuals were followed from June 15, 2020 or the date of immigration (index date), and until the date of IPD, emigration, death, or September 18, 2021, whichever came first. We considered exposure to PPV23 as a time-varying variable, meaning that the included individuals contributed with risk time to the relevant group, i.e. the unvaccinated or vaccinated group. Individuals could move from the unvaccinated group to the vaccinated group, but not in the opposite direction. Since the effectiveness of PPV23 is expected to occur no earlier than 14 days after the date of the PPV23 vaccination, we used a lag period of 14 days, meaning that any outcomes occurring between 0 and 14 days following PPV23 vaccination was included in the unvaccinated group. We used Cox proportional hazards regression models to estimate hazard ratios (HRs) with calendar time as the underlying timescale and adjusted for sex and age as categorical variables, along with 95% confidence intervals (CIs), comparing PPV23 vaccination with no vaccination. The vaccine effectiveness (VE) was calculated as (1-HR)*100% for all-serotype IPD and PPV23-serotype IPD. The statistical analyses were conducted using SAS software version 9.4 (Cary, NC, USA).