Human cartilage and synovial fluid sample collection
Human OA cartilage tissue and synovial fluid (SF) from total knee arthroplasty (n=10, female, average ages 76.2 yrs.). The SF samples were centrifuged at 3,000 × g for 10 min at 4 °C, and the supernatant was collected. The BCA Protein Assay Kit (P0012S, Beyotime, China) was used to measure the total protein concentrations. The protein level of β-catenin, c-Jun N-terminal kinase (JNK) and p-JNK, Calmodulin dependent kinase II (CAMK II) and p- CAMK II, Protein kinase C (PKC) and p-PKC in SF were detected by Western blotting.
CSPC isolation and identification
Cartilage tissue was washed, cut into 1-2mm2 fragments, and digested by 0.2% collagenase type II (Sigma, USA) in Dulbecco's Modified Eagle Medium/Nutrient Mixture F-12 (DMEM/F-12, Gibco, USA) for 4 hours. The isolated cells were seeded into six-well plates (Corning, NY) coated with 10μg/ml of fibronectin (Solarbio, China) in DMEM/F-12 medium with penicillin (100 U/ml), streptomycin (100 μg/ml, Gibco, USA) and 10% fetal bovine serum (FBS, Gibco, USA) for 20 minutes. The nonadherent cells were removed. Adherent cells were collected for further identification. Multipotential differentiation assays and flow cytometry were used to identify CSPC. Cells in Passage 3 were plated in 6 well plates (2×104 /well) and cultured for 14 days in OriCell osteogenic or adipogenic culture medium (Cyagen, USA). Then cells were stained with alizarin red S or an oil red solution. 3×105 cells were put into a 15ml conical tube, centrifugated into pellets, and cultured for 21 days in OriCell chondrogenic culture medium (Cyagen, USA) and stained with Alcian blue. Antibodies against CD44, CD90, CD31, and CD45 (Thermofisher, USA) were used for flow cytometry (BD FACSCalibur, USA). 1×105 cells were suspended in 500 μl PBS containing 20 μg/ml antibody before analyses.
5-ethynyl-2'-deoxyuridine (EdU) incorporation assay
Proliferating cells were determined by the EdU Imaging Kits (APExBIO, USA). Cells were incubated with 10 μM EdU for 2 hours before EdU staining, and cell nuclei were stained with Hoechst 33342 at 5 μg/mL for 30 minutes. The cells were counted in five random fields per well. The percentage of EdU-positive cells was calculated using Image-Pro Plus version 6.0 for Windows (Media Cybernetics, USA). For detecting proliferating cells in the rat OA model, 100μl 10 μM EdU was injected intra-articularly on day 38. Four days later, rats were sacrificed, and the joints were harvested. Paraffin sections were evaluated using the EdU Kit and stained with Hoechst 33342. Each paraffin section was counted in five random fields.
Transwell migration assay
Cell migration assays were performed using 24-well transwell plates with polycarbonate membranes with an 8 μm pore size (Corning, USA). CSPC in DMEM/F12 was added to the upper chamber at a density of 2.5×105 (200 μl/well), and the lower chamber was filled with 10% FBS in the culture medium. Cells that did not penetrate the membrane were removed. Cells were stained with 0.1% crystal violet and counted in six random fields per well.
Lentivirus infection and small interfering RNA (siRNA) transfection
Lv-YAP, Lv-YAP-RNAi, and Lv-Vector were synthesized and packaged by Genechem (Shanghai, China). The lentivirus infected rat OA CSPCs following the manufacturer’s protocol. Si-YAP, si-Birc2, and nonspecific control siRNA (si-Ctrl) were synthesized by JTSBio (Wuhan, China). The siRNAs were transfected into rats OA-CSPC using jetPRIME transfection reagent (Polyplus, France) following the manufacturer’s protocol. The siRNAs sequences are shown in Table.1.
Table.1. RNA oligo sequences for transfection
Name
|
RNA oligo sequences (5’ to 3’)
|
si-YAP1-1
|
GGUCAGAGAUACUUCUAATT
UUAAGAAGUAUCUCUGACCTT
|
si-YAP1-2
|
CCGGGAUGACUCAGGAAUUTT
AAUUCCUGAGUCAUCCCGGTT
|
si-YAP1-3
|
GCUGCCACCAAGUUAGAUATT
UAUCUAACUUGGUGGCAGCTT
|
si-Yap1-1
|
UUGUGAUUUAAGAAGUAUCUC
GAUACUUCUUAAAUCACAAUG
|
si-Yap1-2
|
AUCAUUGUGAUUUAAGAAGUA
CUUCUUAAAUCACAAUGAUCA
|
si-Yap1-3
|
UGUUGUUGUCUGAUCAUUGUG
CAAUGAUCAGACAACAACAUG
|
si-Birc2-1
|
UGGAUUUGUACCAUUCUUCUG
GAAGAAUGGUACAAAUCCAAG
|
si-Birc2-2
|
ACUCAUUGGUUCCUUUAAGGG
CUUAAAGGAACCAAUGAGUCC
|
si-Birc2-3
|
UCAUAUUCUGAAUCUCAUCCU
GAUGAGAUUCAGAAUAUGAAG
|
The co-culture of OA-CSPC with OA-chondrocyte
A co-culture system used six-well transwell plates (Corning, USA). 2.5×105 CSPC, CSPC(YAP+), or CSPC(YAP-) were seeded in the upper compartments, and 2.5 × 105 OA-chondrocyte were cultured in the lower compartments in DMEM/F12 with 10% FBS. Co-cultures were maintained for 7 days before evaluation.
Animal experiments
Hulth’s surgery was performed on 8-week-old male rats. For YAP regulation, 20μl lentivirus expressing YAP (Lv-YAP) or YAP-RNAi (Lv-YAP-RNAi) was injected intra-articularly 7 days after surgery. For CSPC transplantation, 100μl PBS containing 5×106 allogeneic CSPCs was injected intra-articularly 7 days after surgery. CSPCs were infected or transfected with Lv-YAP or si-YAP 3 days before transplantation. The rats were sacrificed for evaluation at weeks 2, 4, or 6.
Histological evaluation
The joint is fixed with 4% Paraformaldehyde and decalcified for 1 month before being dehydrated and embedded with paraffin. Paraffin sections were stained for histological evaluation using safranin O-fast green, anti-CD44 (15675-1-AP, Proteintech, China), anti-CD90 (66766-1-lg, Proteintech, China), anti-YAP (AF6328, Affinity, China), anti-Collagen II (Col II,GB11021, Servebio, China), anti-Collagen I (Col I,bs-0578R, Bioss, China) and anti-Collagen X (Col X,DF13214, Affinity, China). Secondary antibodies were detected using a fluorescent secondary antibody (Proteintech, China) or Rabbit streptavidin-biotin detection system kit (ZSGB-Bio, China) according to the manufacturer's protocol. Joint pathology was quantified using the Osteoarthritis Research Society International (OARSI) scoring system.
RNA-sequencing and functional annotation
5× 106 cells were infected with or without Lv-YAP for 72 h and then subjected to further RNA preparation, library construction, sequencing, and analysis. Genes with an adjusted P < 0.05 and an absolute value of |log2(fold change)| > 1 found by the “limma” R package were assigned as differentially expressed genes (DEGs). Gene Ontology (GO) term enrichment, Kyoto Encyclopedia of Genes and Genomes (KEGG) pathway analysis, and annotation were conducted with “clusterProfiler” and “org.Hs.eg.db” R packages. Expression heatmaps were visualized with “pheatmap” R package.
Real-time quantitative polymerase chain reaction (RT-qPCR)
RT-qPCR was conducted using ChamQ Universal SYBR qPCR Master Mix (Vazyme, China) according to the manufacturer’s protocol. An initial denaturation step was carried out at 95°C for 15 minutes, followed by 40 cycles of denaturation at 95°C for 10 seconds, annealing at 56°C for 30 seconds, and extension at 72°C for 30 seconds. Gene transcriptional levels were normalized to those of β-actin and calculated using the log2–△△Ct method. The primer sequences are shown in Table.2.
Table.2. Gene-primer sequences for RT-qPCR
Name
|
Forward primer(5’ to 3’)
|
Reverse primer(5’ to 3’)
|
YAP1
|
GGTTCATGGCAAAACGAGGG
|
GGTTCATGGCAAAACGAGGG
|
MMP3
|
CTCACAGACCTGACTCGGTT
|
GTCAGGGGGAGGTCCATAGAG
|
MYC
|
CCGCTTCTCTGAAAGGCTCT
|
CGCGGGAGGCTGGTTTT
|
FAP
|
AGACTTGGTCCTTTTCAACGGT
|
ACGATTTTTACCCAAGTCTTCATT
|
LGR5
|
CCTTCAATCCCTGCGTCTGG
|
CCTGGACGGGGATTTCTGTT
|
SOX9
|
ATCTCCCCCAACGCCATCTT
|
CCTGGGATTGCCCCGAG
|
APC
|
ACTCGGAAATGGGGTCCAAG
|
TCTTCAGTGCCTCAACTTGCT
|
LBH
|
CCTTGAGCTAAACTCGGCCA
|
GGGTCAACCTGGACTGACTG
|
SOX17
|
GACCGCACGGAATTTGAACA
|
GCTGTCGGGGAGATTCACAC
|
F3
|
AACACCATGGCACCTTTTGC
|
TGCTTGGACGACCTGGTTAC
|
PDPN
|
AATGTCGGGAAGGTACTCGC
|
AGGGCACAGAGTCAGAAACG
|
SCD
|
AGCAGGTAAATTGTCGGGGG
|
GAGGTTCCTCTTGCTTCGCT
|
VDR
|
ACCAGAAGCCTTTGGGTCTG
|
TCCATCCCTGAAGGAGCAGG
|
BMP4
|
TGGGATTCCCGTCCAAGCTAT
|
CAGGAATCATGGTGTCTTGACAGA
|
AXIN2
|
AGGCCCTGCTGTAAAAGAGAG
|
AGTTCCTCTCAGCAATCGGC
|
CXCL12
|
GCCAGCTCTTCCGCTC
|
CCACGGACGCTCCTGC
|
TCF4
|
GATGCTCTGGGGAAAGCACT
|
GTGCCTGCTGAGAGAGATGG
|
PHF21B
|
GCCGAATTAGCATCGTGCC
|
CGCGGGCAGGGACTATATTT
|
TERT
|
CTCCTGCGTTTGGTGGATGA
|
GGGCATAGCTGAGGAAGGTTT
|
FANCL
|
TCTGTGTTTCTCCGGACTTCG
|
CCCTGAGCCGAGATGAATCC
|
RYK
|
CATCCACCCAGACGACTCAG
|
ACCTAAGGAGCTGGTGATAGGA
|
FZD7
|
CCTACCGCGCCCTACCTG
|
AGTACATCAGGCCGTTGGCA
|
RUNX2
|
GCGGTGCAAACTTTCTCCAG
|
GACTCTGTTGGTCTCGGTGG
|
Yap1
|
GGCAGGCAATACGGAATATCAA
|
GGAGAGCTAATTCCCGCTCTG
|
Ankrd
|
CATAGACTAACGGCTGCCAAC
|
CCCGTTACCAGCTCCTCTAC
|
Ccn1
|
GGATCTGTGAAGTGCGTCCT
|
CGGACTGGTTCTGGGGATTT
|
Ccn2
|
TGGCTTGCTCAGGGTAACTG
|
CTGCCTCCCAAACCAGTCAT
|
Birc2
|
GGGACACTCGCGAAGGC
|
TCTTGAGGGCTATAAATCGCAG
|
Western bolting
Protein extracts were subjected to sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE), and the proteins were transferred to polyvinylidene fluoride (PVDF) membranes and blocked in blocking buffer (5% skimmed milk) for 1 hour. The membranes were incubated overnight at 4°C with primary antibodies against β-catenin (8480S,CST, USA), JNK and p-JNK (BS3630 and BS4763, Bioword, China), CAMK II and p-CAMK II (BS5510 and BS5009, Bioworld, China), PKC and p-PKC (AP0290, Bioworld, China), Lubricin (bs-11175R, Bioss, China), YAP (AF6328, Affinity, China), fibroblast activation protein alpha(FAP,AF5344, Affinity, China), vitamin D receptor(VDR AF6159, Affinity, China), telomerase reverse transcriptase(TERT,DF7129, Affinity, China), matrix metallopeptidase 3 (MMP3,AF0217, Affinity, China), Focal adhesion kinase (FAK,BS6899, Bioworld, China), Col I (bs-0578R, Bioss, China), Col II (GB11021, Servicebio, China), Col X (DF13214, Affinity, China), Birc2 (DF6167, Affinity, China), snail family transcriptional repressor 2 (Snai2,AF4002, Affinity, China), zinc finger E-box binding homeobox 2(Zeb2,AF5278, Affinity, China), cyclin D2(Ccnd2,AF5410, Affinity, China), and glyceraldehyde-3-phosphate dehydrogenase(GAPDH). The following day, the membranes were incubated with fluorophore-conjugated secondary antibody or HRP-conjugated secondary antibody at room temperature for 1 hour and developed in electrochemiluminescence (ECL) Western blot detection reagents (Biosharp, China).The band was analyzed using LI-COR Odyssey infrared imaging system (LI-COR Corp., NE) or UVP Chem studio PLUS 815 (Analytik Jena, Germany).
Statistical analysis
Values in the text and figures are expressed as the mean ± SD unless otherwise noted. Statistical significance was determined by Student’s t-test or analysis of variance (ANOVA) using SPSS 17.0 (SPSS, Inc., Chicago, IL, USA). Spearman correlation analysis was applied to evaluate correlations among continuous variables. R version 4.0.3 was used for omics data analyses. Differentially expressed genes (DEGs) between two subclusters were calculated with the R package “limma” (|log2 FC|>1 and adjusted P < 0.05). P values in GO and KEGG enrichment analyses were adjusted using the “Benjamini & Hochberg” method. Differences with p < 0.05 were considered statistically significant.