Plan of 6 different in-vitro and in-vivo preclinical studies:
A.In-Vitro studies:
In the 1st study; surface tension, contact angle, and pH values of saline, KOH, and lye were studied. This study was conducted to observe the basic physicochemical properties of KOH.
In the 2nd study; saliva was used as the source of mucus and saline, KOH, and lye were added to the mucus. Changes in surface tension, contact angle, and pH values of mucus were examined. This study was carried out to observe the changes in the mucus structure of KOH.
In the 3rd study; the effects of different concentrations of KOH and lye on mitochondrial dysfunction and cell survival in cell culture were evaluated. This study was conducted to observe the potential toxicological effects of KOH.
In the 4th study, interactions of KOH with membrane phospholipid bilayer, mucin, virus components/mediators were studied in a silico simulation. This study was carried out with the aim of observing the reactions and reaction properties of the molecular agent, which is thought to have possible positive antiviral effect against coronavirus and influenza in the treatment of these diseases with simulation with artificial intelligent.
B. In-vivo studies:
In the 1st study in order to evaluate the possible harmful effects of KOH on injured cells, the histopathological changes caused by KOH in the damaged tissue of the oral mucosa were evaluated. This study was carried out to observe the possible damage to the oral mucosa in the case of the use of KOH.
In the 2nd study, initially, histopathological examination of the main respiratory tract was performed and mucus viscosity in mice was then examined. This study was carried out to observe the cellular damage in the lung tissue, the effect on the lung mucus, the risk of hyperkalemia in serum potassium levels in the case of the use of KOH.
1. Ethics Committee Approvals: Before the experiments, ethical approval for the animal studies was obtained from the Adana Veterinary Research Institute Ethics Committee Unit (20.04.2020-2020-1/800). Furthermore, ethics committee approval for mucus study was obtained from the non-invasive clinical research ethics committee (04.09.2020-103) of Çukurova University Faculty of Medicine.
2. Preparation of lye: The branches of fig and olive trees were collected and dried for 5 days without wetting. The twigs were then burned. After the ash has cooled, 10 g of ash is placed in 500 mL of saline in a sterile container and kept for 12 hours. After ash decantation, the supernatant was sampled and buffered in saline to pH 8,9.
3. Preparation of KOH solution: KOH solution was formed by adding KOH (Merck, Darmstadt, Germany) to 1 L distilled water containing 0.9% NaCl at pH 8.9. Solution pH was prepared to 8.90 by vortexing (VELP) at 500 rpm for 10 minutes at room temperature. The KOH molarity in the solution whose pH was fixed at 8.90 was calculated as 8.43x10-5 .
4. Mucus collection: Volunteers (35-50 age, male) were asked to transfer 25 mL of saliva accumulated in their mouths in the early morning hours into the container given. We studied with a single-gender in order not to affect the reactions that occur in the volunteer mucus from gender differences. The collected saliva was centrifuged at 5,000 rpm for 5 minutes (Sigma2- 16K). The supernatant was divided into 4 collecting vessels: 1st tube: 7 mL, 2nd tube: 3.5 mL, 3rd tube: 3.5 mL, and 4th tube 3.5 mL. While no addition was made to the 1st tube; saline, KOH, and lye solutions were added to the 2nd, 3rd and 4th tubes, respectively. Subsequently, examinations were carried out at room temperature promptly.
5. Atomic absorption spectrometry measurement: The concentration of K and sodium (Na) elements in the liquid solution was determined by atomic absorption spectroscopy of saline, KOH, and lye solutions. Results were set in ppm (PerkinElmer precisely AAnalyst 700).
6. Study of physicochemical properties of fluids:
6. 1. pH measurement: The probe was dipped into the prepared liquid and the measurement continued until the pH meter screen was fixed at room temperature. The fixed value was accepted as the measurement of pH (Martini Mi151).
6. 2. Surface tension measurement: Measurements were made according to the Du Nouy ring method (24). The prepared 7 mL liquid samples were put into the liquid container. After the ring was immersed in the liquid, it was slowly pulled up from the liquid. After the ring was separated from the liquid, the value displayed on the screen was recorded with the measurement value Dyn/cm (TD1C LAUDA).
6. 3. Contact angle measurement: Contact angles of liquids were evaluated using the Sessile drop method. The liquid whose contact angle was to be determined is imaged with a micropipette in the form of a micropipette with a high-resolution camera (OneAttension program was used) (25). Then it was left on the microplate cleaned slide with the trigger apparatus. Then, the angles made with the surface on both sides of the liquid were recorded as contact angles. The calculation was made by taking the average of both angles (24).
7. 1. Retrieval and preparation of the receptor structures for the in a silico study: In this study, molecular docking experiments were carried out to reveal the affinity of the KOH molecule to the membrane bilayer complex, mucin5AC, 2019-nCoV spike glycoprotein, TMPRSS2, human angiotensin-converting enzyme 2 (hACE2) receptors and influenza virus neurominidase enzyme(26-28). The KOH ligand (ID:14113) used in this study was downloaded from www.chemspider.com in the ‘mol’ format. The molecule to which hydrogen atom was added, was optimized using Avogadro software and saved in ‘pdb’ format.
7. 2. Molecular docking experiments: Molecular docking calculations were performed using AutoDock 4.2 to predict the binding affinity of KOH with the 2019-nCoV RBD, TMPRSS2, membrane bilayer complex, mucin5AC, hACE2 and influenza virus neurominidase enzyme. AutoDockTools-1.5.6 was used to prepare the target and ligand molecules and also the parameters before initiating the docking analysis using AutoDock 4. 2(29, 30).
The best docking poses obtained using AutoDock 4.2 between the ligand and receptor structures were analyzed with the BIOVIA Discovery Studio Visualizer 2016.
8. Cell culture study: NIH-3T3 mouse embryonic fibroblast cells were used in cell culture studies. The positive or negative effects of different concentrations of KOH solution and lye (1%, 0.1%, 0.05%, 0.01%, and 0.001%) on cells were investigated. This method was made based on active absorption of 3-4,5-dimethyl-thiazolyl-2,5-diphenyltetrazolium bromide (MTT) into living cells and reduction to blue-purple colored, water-insoluble formazan (31-33).
9. In vivo studies on animals
9. 1. Oral mucosal toxicity study: 40 male 10-week-old Swiss albino mice (25-30 g) were divided into 5 groups (n = 8). Groups were formed by the random selection of mice. The experiment was modified according to the principles of oral mucosal injury. Oral mucosal damage was created in the first 4 groups. The 5th group was formed as a control group in order to make a comparison with damaged tissue. KOH solution was applied to groups 1 and 2, and saline to groups 3 and 4 were applied as a spray in the mouth with an interval of 8 hours for 5 days, targeting the injury site. Euthanasia was performed under anesthesia on the 5th day to the 1st, 3rd, and 5th groups, and on the 21st day to the 2nd and 4th groups. In the subjects, the part with mucosal damage was excised (34, 35).
9. 2. The effectiveness of KOH on bronchoalveolar epithelial cell damage and bronchoalveolar lavage and toxicity studies on blood K level: While groups 1 and 2 consisted of 2.5 months old (22-28 g) young mice, mice in groups 3, 4, 5, and 6 consisted of 30 months old (30-35 g) advanced-aged male mice. In groups 5 and 6, the steam of KOH solution was applied with a nebulizer. No chemicals were applied to the other groups. Bronchoalveolar lavage (BAL) samples of 1st, 3rd, and 5th group mice were taken under anesthesia on the 6th day. Tissue histopathology and blood samples were obtained from mice in groups 2, 4, and 6.
9. 3. KOH application with a nebulizer to mice: Prepared KOH solution was put into the nebulizer chamber. A face mask was not attached to the end of the air tube. Each mouse was fixed in the hand, from the back and nape of the neck, allowing the nebular vapor to enter the mouth and nose (MMAD:0.5-5μm, Nebulization rate:0.25Ml/min, Compressor pressure:2.5bar Nimo; Turkey). This process was applied for 30 seconds every 8 hours for 5 days.
9. 4. BAL: The previous procedure has been modified, keeping the basic principles the same. The trachea was cannulated with a 27-gauge injector tip. The injector tip was clamped so that the distal part was inside the trachea. 0.3 mL of saline was gently injected at room temperature. Then, 0.1 mL of liquid was aspirated back (35-38). 9. 5. Serum K level: Blood was drawn from the right atrium after BAL samples were taken while the subjects were under anesthesia and serum K levels were evaluated.
9. 5. Histopathological evaluation: In histopathological evaluation, reepithelialization, granulation tissue, inflammation, and angiogenesis were evaluated in oral mucosa tissue samples. Furthermore, edema, hyaline membrane formation, neutrophil infiltration, lymphocyte infiltration, bronchial epithelial damage, and hemorrhage were evaluated for lung tissues. Scoring according to the severity of the above parameters was done as follows; 0:no pathological finding, 1:mild, 2:moderate, 3:severe (39).
10. Oxidative stress studies:
10. 1. Determination of malondialdehyde (MDA): The determination of MDA, one of the lipid peroxidation products, was performed based on the reaction of thiobarbituric acid and MDA, which is found by Ohkawa et al, to give a colored compound that can be measured at 532nm wavelength (40).
10. 2. Determination of Superoxide dismutase (SOD): In the method applied by Fitzgerald et al., superoxide radical is produced by the xanthinexanthine oxidase (XOD) system and the resulting superoxide radical reacts with Iodonitrotetrazolium to form a violet-colored formazan dye and this color intensity is measured at a wavelength of 505nm (41).
10. 3. CUPRAC (CUPRIC Reducing Antioxidant Capacity): In the method developed by Apak et al., phenolic hydroxyls are transformed into quinone structures corresponding to the CUPRAC redox reaction and it is based on the principle of measuring the Cu(I)-Nc chelate
11. Statistical evaluation: Paired Sample t-Test was used to compare dependent samples observed in two different situations. Student t-Test was used to compare the data in which independent samples were suitable for normal distribution (pH, surface tension, contact angle, serum potassium level and histopathological examination), and a non-parametric MannWhitney U test was used to compare the means of two independent groups that did not show normal distribution characteristics (mitochondrial activity analysis and oxidative stress changes). SPSS 17 package program was used in the study. p<0.05 was considered significant.