Tissue samples
Tumor tissues and their adjacent normal tissues from 34 BC patients were collected from the Department of Breast and Thyroid Surgery of Shanghai Tenth People’s Hospital of Tongji University (Shanghai, China). None of the patients received any local or systemic treatment before surgery and all tissue specimens were immediately snap-frozen in liquid nitrogen until further use. Our study protocols were approved by Institutional Ethics Committees of Shanghai Tenth People’s Hospital and written informed consent was obtained from all patients or their relatives. The methodology of this study adhered to the standards outlined in the Declaration of Helsinki.
Cell Culture And Transfection
The human BC cell lines MDA-MB-231, MCF-7, HCC-1937, SKBR3 and normal breast epithelial cell line MCF-10A were purchased from Chinese Academy of Sciences (Shanghai). MDA-MB-231, MCF-7, HCC-1937 and SKBR3 cells were cultured in Dulbecco’s Modified Eagle’s Medium (DMEM) (Gibco, USA) with 10% Fetal Bovine Serum (FBS) (Gibco), penicillin (100 units/ml) and streptomycin (100 µg/ml) (Enpromise, China). MCF-10A cells were cultured in Mammary Epithelial Basal Medium (MEBM) (Cambrex). All these cells were cultured at 37 ℃ with 5% CO2. Small, interfering, specifically targeting human hsa_circ_0005273 (si-circ_0005273), non-specific negative control oligos (si-NC) and has_circ_0005273 overexpression(circ_0005273), were purchased from IBSBio(Shanghai, China).
Human miR-200a-3p-mimics and the corresponding negative control mimics (miR-200a-3p-NC) and miR-200a-3p inhibitor were purchased from RiboBio(Guangzhou, China). MDA-MB-231 and MCF-7 cells were cultured and transfected with reagents above using Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.) according to the manufacturer’s instructions for 6 h at 37 °C for transient transfection. We used DNA Midiprep Kits (Qiagen, Hilden, Germany) to prepare plasmid vectors. A lentivirus carrying si-circ_0005273 was constructed by ZORIN(Shanghai, China) and transfection procedures were performed according to the manufacturer’s instructions.
RNA extraction and qRT-PCR
Total RNA was extracted from frozen tissues and cultured cells by Trizol reagent (Invitrogen, Carlsbad, CA, USA) and the concentration and purity of RNA samples was assessed with a Nanodrop 2000 spectrophotometer (Thermo Fisher Scientific, Inc.). cDNA was synthesized by a commercial cDNA synthesis kit (Takara Biotechnology, Dalian, China). We conducted quantitative real-time polymerase chain reaction (qRT-PCR) by using the SYBR Green PCR Kit (Takara Biotechnology, Dalian, China) and primer sequences were designed and synthesized by RiboBio (Guangzhou, China). Expression of circRNA, miRNA and mRNA were assessed by handling threshold cycle (CT) values and analysed using the 2−ΔΔCt method.
RNase R Resistance Analysis Of circRNAs
The has_circ_05273 from MDA-MB-231 and MCF-7 cell lines were treated with RNase R (4 U/mg, Epicenter) and incubated for 30 min at 37 °C. Then, the treated RNAs were reverse transcribed with specific primers and detected by qRT-PCR assay.
MTT Assay
For MTT assay, a density of 2000 cells per well were placed into 96-well plates. The cells were detected in accordance with the manufacturer's instructions using MTT assay kit (Sigma, Santa Clara, CA, USA). The 490 nm optical density was detected by a microplate reader respectively at 24, 48, 72 and 96 h.
Colony Formation Assay
A density of 500 cells per well were transferred into six-well plates. Cell colonies were washed twice by using cold phosphate buffered saline (PBS), fixed with 75% ethanol and stained with 0.1% crystalline purple untill the colonies were visible. Then colonies were counted and photographed.
Wound Healing Assay
MDA-MB-231 and MCF-7 cells were transfected with a range of constructs as indicated in 6-well plates. When the treated cells reached about 80% confluent, a scratch was produced in the cell monolayer by drawing a 200-µl-pipette tip over the surface of each well, holding the tip perpendicular to the plate. The monolayers were washed twice with 1x PBS and cultured with DMEM medium with 2%FBS. Wound healing was observed under a light microscope and pictures were taken at 0 h, 24 h and 48 h at the same position to observe cell movement.
Migration Assays
Transwell chambers (Corning, Inc., Lowell, MA, USA) were used to measure the migration ability of the cells in 24-well plates. Cells were transferred into the upper chamber with 200 µl serum-free medium and medium with 10% FBS was added to the lower chamber. 24 h later, cells in the upper chamber were carefully removed by a cotton swab. Then, the cells on the opposite side of the filter were fixed with 70% ethanol for 30 min and stained with 0.1% crystal violet for 10 min. Representative pictures were taken with a microscope e (Leica Microsystems, Mannheim,Germany) and migrated cells were counted in five random fields.
Dual-luciferase Reporter Assay
To confirm that miR-200a-3p directly targets has_circ_0005273 and YAP1 3’-UTR, Wild and mutant reporter plasmids of has_circ_0005273 and LATS2 were individually designed and synthesized by IBSBio (Shanghai, China). 293T cells were co-transected with the constructed reporter plasmids, together with miR-200a-3p mimics or miR-200a-3p-NC using Lipofectamine® 2000 (Invitrogen; Thermo Fisher Scientific, Inc.). 24 hours later, luciferase activities were measured by the Dual-Luciferase® Reporter Assay kit (Promega, Madison, USA). Then firefly to Renilla luciferase ratios were calculated.
Western Blot Analysis
Proteins were extracted by using RIPA lysis buffer (Beyotime, Jiangsu, China) and the concentrations were detected by using a protein assay kit (Beyotime). Protein lysates were separated by 10% sodium dodecyl sulfate-polyacrylamide gels and then transferred to nitrocellulose membrane (Beyotime). The we incubated with 5% non-fat milk for 1 h and immunoblotted at 4 °C overnight with primary antibodies. The next day, we incubated the membranes in secondary antibodies for 1 h at room temperature. Signals of protein bands were scaned by Odyssey Infrared scanning system (Li-Cor, Lincoln, NE, USA).
FISH Assay
Ribo™ Fluorescent In Situ Hybridization Kit (Ribo, China) was used in FISH assay and specific probes for the hsa_circ_0005273was designed and synthesized by RiboBio (Guangzhou, China). 4’ ,6-Diamidino-2-Phenylindole (DAPI) was used to stain cell nuclei. Fluorescence microscope e (Olympus BX53 Biological Microscope) was used to capture the images of cells.
Xenograft Tumor Assay
Athymic nude mice (age, 4–6 weeks; weight, 18–22 g, 4 mice per group) were ordered from the laboratory animal center of Shanghai. Approximately 1 × 106 MDA-MB-231 cells with stable expression of si-circ_0005273 or si-NC were injected into the second mammary fat of the mice (n = 4, each group).Then, Tumor size was measured and calculated every week using the following formula: Volume (mm3) = 0.5 * width2 * length. After 5 weeks, the mice were killed by cervical dislocation and the tumors were collected.
Statistical analysis
The significance of differences between groups was assessed by GraphPad Prism V8.0 (GraphPad, CA, USA) and SPSS 20.0 (IBM, SPSS, IL, USA).All experiments were repeated for three times. Data were obtained from three independent experiments which are presented as the means ± standard deviation (SD) and a P-value < 0.05 was considered significant.