Synthesis and purification of Sgc8-c-NOTA-67Ga and Sgc8-c-ALEXA-647. The synthesis and purification of both probes were performed following previous reports from our laboratory37,39,40.
In vitro biological studies
Tumor cell lines.Mus musculus melanoma B16F1 (ATCC, CRL-6323), Mus musculus metastatic melanoma B16F10 (ATCC, CRL-6475) and Homo sapiens glioblastoma U87 MG (ATCC, HTB-14) cell lines were grown in adherence in Dulbecco's Modified Eagle's Medium (DMEM) (Capricorn, Ebsdorfergrund, Germany) supplemented with 10 % fetal bovine serum (FBS, Sigma-Aldrich, St. Louis, USA) and 2 mM L-glutamine (Sigma-Aldrich, St Louis, USA). Homo sapiens, acute lymphoblastic leukaemia CCRF-CEM (ATCC, CCL-119) cell line was grown in a suspension of RPMI-1640 medium (Sigma-Aldrich, St. Louis, USA) supplemented with 10 % FBS and 2 mM L-glutamine. The CCRF-CEM and U87 MG cell lines were used as a positive and negative controls, respectively52,53. All cell lines were provided from ATCC (American Type Culture Collection, VA, USA) and were cultured at 37°C with 5 % CO2.
Binding studies for radio-probe. For in vitro cell binding assays, 1.0 × 106 cells from the B16F10 cell line were washed with sterile Phosphate-buffered saline (PBS) pH 7.4, centrifuged at 1000 rpm for 3 min and incubated with 100000 cpm of the Sgc8-c-NOTA-67Ga probe by 0.5, 2 and 4 h at 37°C. In addition, a competition assay was performed by incubating cells with an excess of underivatized aptamer (Sgc8-c-NH2, 5 µg, 0.4 nmol) for 0.5 h a 37°C. After 0.5 h, these same cells were incubated with the labeled probe for an additional 2 h at 37°C. At the end of the incubation time, the medium was removed and the cells were resuspended and washed twice with PBS, centrifuging at 1000 rpm for 3 min. The test was done in quintupled. The activity retained in the cells was measured on a gamma counter (PC-RIA MAS, Stratec).
Binding studies for fluorescent-probe. The murine tumor cell line B16F10, and the human tumor cell lines CCRF-CEM and U87 MG, were washed with sterile PBS pH 7.4, centrifuged at 1000 rpm for 3 min and approximately, 5 × 105 cells were incubated at 37°C for 30 min with different concentrations of the Sgc8-c-Alexa647 probe (0.007, 0.3 and 1 µM). After incubation, the medium was removed by centrifugation at 1000 rpm for 3 min and washed with PBS, and centrifuging again at 1000 rpm for 3 min. The test was done in quintupled. For each sample, 10000 events were detected using a 635nm excitation, laser detector and BP 660 / 20 nm. The FACS Canto II flow cytometer (BD Biosciences, San Diego, CA, USA) equipment and data were analyzed using FACS Diva and FlowJo software. These results were validated with an anti-PTK7-PE antibody (United States Biological. Clone Type: Polyclonal. Catalog Number: 033359-PE). Specific mean fluorescence indices (MFIs) were calculated as the mean fluorescence of Sgc8-c-Alexa647 cells positive in the presence of aptamer over the mean fluorescence of the entire cell population in the absence of aptamer.
Western blotting. Supernatants and cell pellets from B16F10 cell cultures were collected separately. Pellets were washed with sterile PBS pH 7.4, centrifuged at 1,000 rpm for 3 min and stored at -20°C until use. Supernatant proteins were obtained by precipitation with trichloroacetic acid (TCA). Briefly, supernatants were centrifuged for 15 min at 4,000 g at 4°C. The supernatants from this centrifugation were recovered and passed through a 0.22 µm filter. Then, TCA (10 % final solution) was added and incubated for 1 h on ice. Pellets were obtained by centrifugation, for 30 min at 13,000 rpm and at 4°C, and further washed three times with 1 mL of acetone and allowed to dry. Finally, proteins were resuspended in 500 µL of PBS pH 7.4. The amount of sample to be used in the Western blot was normalized, quantifying the samples using the bicinchoninic acid assay. Subsequently, these samples were run on a 12 % SDS-PAGE gel at 100 V and the blotting membrane was transferred overnight at 400 mA and at 4°C. The membrane was blocked with 5 % milk in PBS pH 7.4, for 2 h at room temperature (RT). Subsequently, it was incubated with either the Sgc8-c-Alexa647 probe (10µg, 0.8 nmol) or the anti-PTK7-PE antibody, at the concentrations recommended by the manufacturer. Three washes with PBS/TBS were performed before the membrane was observed in an imaging equipment (In-Vivo MS FX PRO instrument, Bruker, Billerica, USA).
Confocal microscopy. To perform confocal microscopy assays, 1 × 105 cells from the B16F10 and B16F1 tumor cell lines were grown on round glass coverslips (12 mm) inside 24-well plates. These cells were incubated with the Sgc8-c-Alexa647 probe (10 µg, 0.8 nmol) for different times (2, 4, and 16 h). Cells were washed with sterile PBS pH 7.4 and fixed with 4 % paraformaldehyde. Subsequently, the coverslips were placed in a humid chamber, the cells were blocked with 2 % bovine serum albumin in PBS for 20 min at RT and then they were blocked for an additional 15 min, also at RT, with the same solution but adding Triton (0.3 %). Cells were incubated for 1 h at RT with the Hoechst 33342 nuclear marker (1:100, ImmunoChemistry Technologies, LLC) and with the WGA-green membrane marker (1:100, thermofisher scientific, USA). They were washed three times with PBS pH 7.4 and three more times with mili Q water. The coverslips were mounted with ProLong® (thermofisher Scientific, USA) and the images were taken in the confocal microscope LEICATCS-SP5-DMI6000 (HeNe laser, 10mW: 633 nm). To determine if the probe was internalized endosomically, we followed the same protocol as before, incubating for 0.5, 2 and 4 h and instead of using a membrane marker, the early endosomal marker Rab5 (rabbit, 1:100, C8B1 mAb 3547, Cell Signaling Technology, USA) was used. The secondary antibody anti-rabbit IgG, Alexa 488-conjugated (goat, 1:500, ab 150077 Abcam, USA) was used.
In vivo biological studies
Animals. Female C57BL/6 mice, 8 to 12 weeks of age, were used for the in vivo evaluation. Animal experimentation protocols were approved by the Ethical Committee of the University for Animal Experimentation, Uruguay (approval number: 240011-001891-17), all experiments were performed following the principles outlined in the Declaration of Helsinki and complying with the ARRIVE guidelines. Animals were purchased from URBE (Unidad de Reactivos y Biomodelos de Experimentación, Facultad de Medicina-Universidad de la República, Montevideo, Uruguay). Animals were housed in wire mesh cages (racks with filtered air) at 20 ± 2 oC with cycle of 14 hours of light and 10 hours of darkness. They were fed ad libitum to standard pellet diet and given water ad libitum and were used after a minimum of 3 days acclimation to the housing conditions. Animals were monitored daily, recording their behavior and the presence or absence of tumor. Tumor location and volume was recorded, and checked that they did not exceed a diameter of 5 mm. Isoflurane was used for anesthesia and at the end of the experiments the animals were sacrificed by cervical dislocation.
Binding studies for fluorescent-probe. For this assay 2.5 × 105 cells/100 mL of the B16F10 cell line were injected subcutaneously into the right flank of C57BL/6 mice. Once tumors were palpable (10–12 days), the Sgc8-c-Alexa647 probe (25 µg, 2 nmol) was injected intravenously (i.v.) through the tail vein. At 0.5, 2 and 24 h post injection, mice were sacrificed to obtain the tumor, liver, spleen and marrow derived from the femur. Organs and tissues were disaggregated by passing through a cell strainer 70 µm (BD Bioscience) and resuspended in sterile PBS pH 7.4. For each sample, 10000 events were detected using the same laser, detector, and equipment mentioned above. The test was done in quintupled. Data were analyzed using FACS Diva and FlowJo software.
Imaging and biodistribution. To generate the melanoma tumor model, murine cell line B16F10. Tumors were induced in the C57BL/6 mice as described above for B16F10. Once melanomas were palpable, the Sgc8-c-Alexa647 probe (25 µg, 2 nmol) was injected i.v. and at 0.5, 2, 24 and 48 h post- injection (n = 5 per time group), mice were sacrificed. Ex vivo images of organs (liver, heart, lungs, spleen, kidneys, thyroid, muscule, bone, blood and tumor) were taken using the imaging equipment above mentioned, with the X-ray and fluorescence model. This study was compared with the melanoma tumor model generated with B16F1 cells. The results were expressed in ROI and the tumor/blood and tumor/muscle ratios were calculated. A competition test was performed. One group of mice (n = 5) were first i.v. injected with Sgc8-c-NH2 in excess of 5 times more than the probe. After 30 min post-injection, the same mice were i.v. injected with the Sgc8-c-Alexa647 probe. After 2 h mice were sacrificed, images taken and organs weighed. Similar evaluation was performed for the radiolabelled probe. Sgc8-c-NOTA-67Ga was i.v. injected (~ 1850 kBq) and biodistribution of the probe was following until 72 h post-injection. Over time, the animals were anesthetized with isoflurane to perform the images in vivo. Live images were aquired for 0.5, 2, 24, 48 and 72 h after injection by X-rays and gamma modalities in the imaging equipment. For the biodistributions animals were sacrificed, images were acquired and the levels of radioactivity in the tissue were measured using a gamma counter (PC-RIA MAS, Stratec). Radioactivity levels were expressed as percentage of injected dose per organ gram (%ID/g) and injected dose (%ID). Blocking assays were also performed, injecting mice first with 0.5 nmol of Sgc8-c-NH2 and after 30 min re-injected with Sgc8-c-NOTA-67Ga and at 2 h the imaging and biodistribution studies were performed.
Statistical analysis. Statistical analysis was performed using the Student's t-test and the p values of significance indicated in each figure.