Ym155 decreases BMP signaling
H1299 cells were injected into the intradermal space of the flanks of NOD SCID IL2Rgammanull (NSG) mice and were treated with DMSO or JL5 for 4 days. We previously reported that JL5 decreases the expression of Id1 but not XIAP in the tumor xenografts [8]. Survivin is in the family of anti-apoptotic proteins that has been reported to be regulated by BMP signaling and is known to stabilize the expression of XIAP [23]. We found for the first time that inhibition of BMP signaling with JL5 causes a significant increase in the expression of survivin in the tumor xenografts (Fig. 1A).
We explored whether Ym155, a reported survivin inhibitor [24], would have synergy when used in combination with a BMP inhibitor. First, we looked at the effects of Ym155 on the expression of survivin and XIAP. Ym155 induced a significant decrease in the expression of XIAP and caused decreased activity in its downstream target TAK1 in H1299 (Fig. 1B) and A549 cells (Fig. 1C) with little change in the expression of survivin. This is consistent with prior studies suggesting that Ym155 mediates its effects independent of survivin [25].
Since BMPR2 regulates XIAP through Smad-1/5 independent mechanisms, we examined whether Ym155 regulated BMP signaling. The effects of Ym155 on BMP Smad-1/5 dependent signaling was by assessed by examining changes in the phosphorylation of the BMP transcription factor Smad-1/5 and its downstream transcriptional target Id1. Ym155 caused a significant decrease in the activity of Smad-1/5 and Id1 in both the H1299 (Fig. 1D) and A549 (Fig. 1E) cells at nanomolar concentrations. H1299 cells were stably transfected with the Id1 promotor driving the expression of the luciferase reporter. Ym155 caused a dose responsive decrease in the Id1 reporter (Fig. 1F). Transfection of constitutively active BMPR1A (caBMPR1A) activates Smad-1/5-Id1 signaling. Ym155 inhibited caBMPR1A activation of Smad-1/5 (Fig. 1G). These studies show that Ym155 regulates both Smad-1/5 dependent and independent signaling, raising the possibility it regulates BMPR2.
Ym155 synergizes with JL5 to decrease BMP signaling and induce cell death
Since Ym155 does not target the BMP receptors, we examined whether it would induce synergy with JL5. JL5 caused significantly more cell death when used in combination with Ym155 compared to either compound alone in three different lung cancer cell lines (Fig. 2A-C). By Western blot analysis, there was no change in BMP signaling with JL5 and Y155 alone or in combination after 3h (Fig. 2D). By 24h, the combination of Ym155 and JL5 significantly decreased the expression of Id1 and XIAP in comparison to each compound alone in both the A549 and H1299 cells (Fig. 2E-F). Ym155 alone induced apoptosis as demonstrated by the expression of activated caspase-3, 17 kd and 19 kd fragments and cleavage of its downstream target poly ADP ribose polymerase (PARP) (Fig. 2G). We found no activation of caspase-3 or caspase-9 when examined at 1, 3, and 24 hours (Fig. 2G and data not shown). The pan-caspase inhibitor Z-VAD-FMK did not affect cell death induced by JL5 and Ym155 in combination (Fig. 2H). Necrostatin, which inhibits necrosis induced by receptor-associated adaptor kinase 1 (RIP1) [26], also had no effect on cell death induced by JL5 and Ym155 when used in combination (Fig. 2H). These studies suggest that Ym155 together with a BMP receptor inhibitor synergize to mediate cell death by mechanisms independent of caspases or RIP1 induced necrosis.
Ym155 together with JL5 increases cytosolic AIF and Smac/DIABLO
Since apoptosis is not induced with JL5 and Ym155, we explored whether cell death involved the mitochondrial release of AIF [27]. In cells undergoing AIF induced cell death, AIF is cleaved producing 67 kd and 57 kd fragments, which is then rapidly transported to the nucleus. Nuclear AIF induces DNA fragmentation and chromatin condensation leading to cell death [27]. The combination of Ym155 and JL5 synergistically enhanced the release of Smac/DIABLO into the cytosol as early as 3h and persisted for at least 24h in A549 cells (Fig. 3A-B). In the H1299 cells, we did not identify cytosolic AIF after 3h but was noted 24h after being treated with JL5 and Ym155 in combination (Fig. 3C-D). Cytosolic AIF was not observed when JL5 and Ym155 were used alone. Smac/DIABLO causes the inhibition and degradation of anti-apoptotic proteins cellular inhibitor of apoptosis 1 (c-IAP-1). Consistent with an increase in cytosolic Smac/DIABLO, JL5 together with Ym155 caused a significant decrease in the expression of c-IAP-1 (Fig. 3E-F).
BMP inhibitors with YM155 cause DNA double stranded breaks and nuclear localization of AIF
A hallmark of AIF induced cell death is the induction of DNA double stranded breaks (DSB) and its localization to the nucleus. The TUNEL assay was used to determine DNA-DSB. Three hours following treatment with JL5 or Ym155 alone or in combination no DNA-DSB were found (Figure 4A). After 24h, very few cells treated with JL5 or Ym155 alone demonstrated DNA-DSB. JL5 when used in combination with Ym155 approximately 40% and 65% of cells demonstrating DNA-DSB in A549 and H1299 cells, respectively (Fig. 4B). DMH2 is similar to JL5, having potent inhibition of BMP type 1 receptors with some inhibition of BMPR2 [8]. DMH2 treated cells also demonstrated an increase in DNA-DSB when used in combination with Ym155 (Fig. 4C). To assess whether synergy also occurred by inhibiting TGF signaling, we used the selective TGF receptor inhibitor SB-505124 [28]. SB-505124 had no effect on DNA-DSB when used alone or in combination with Ym155 (Figure 4C). Using immunofluorescent imagining, we examined whether AIF localized to the nucleus following treatment with JL5 and Ym155. JL5 and Ym155 alone did not cause the localization of AIF to the nucleus in either the H1299 or A549 cells (Fig. 4D-G). However, when JL5 was combined with Ym155 there was significant localization of AIF to the nucleus associated with chromatin condensation in both the H1299 and A549 (Fig. 4D-G).
Ym155 decreases BMPR2 expression and promotes BMPR2 mislocalization to the cytoplasm
Since Ym155 decreases the expression of XIAP and Id1, which are both regulated by BMPR2, we examined if Ym155 regulated expression of BMPR2. Ym155 caused a dose-related decrease in the expression of BMPR2 that was associated with corresponding decrease in the expression of XIAP in both the A549 and H1299 cells (Fig. 5A-B). At lower concentrations of Ym155 (20 nM), which has no effect on the level of BMPR2 expression, there was an enhanced decrease in expression of BMPR2 and XIAP when Ym155 is used in combination with JL5 (Fig. 5C-D). As previously reported, JL5 caused the mislocalization of BMPR2 to the cytoplasm (Fig. 5E) [22]. We show for the first time that Ym155 alone also causes an increase in the localization of BMPR2 to the cytosol (Fig. 5E), which was greatly increased when JL5 and Ym155 were used in combination (Fig. 5E).
To assess whether the increased nuclear localization of AIF in cells treated with JL5 in combination with Ym155 was mediated by then inhibition of BMPR2, we knocked down the expression of BMPR2 with siRNA in H1299 cells then treated the cells with a low concentration of Ym155 (20 nM). The knockdown of BMPR2 together with Ym155 (20 nM) significantly enhanced AIF localization to the nucleus in comparison to siRNA control cells treated with Ym155 (20 nM) (Fig. 5F-G). These studies show that Ym155 decreases BMP signaling, which involves the downregulation of the expression of BMPR2 expression and its mislocalization to the cytoplasm. The data also suggests that the inhibition of BMPR2 is required for AIF localizing to the nucleus.
Ym155 is a mitochondrial DNA binding agent
A previous report demonstrated that Ym155 promoted a DNA damage response at a significantly lower dose, decreasing the expression of survivin. This study concluded that Ym155 is a chromosomal DNA damaging agent and the effects on survivin are a secondary event [25]. DNA binding agents are widely used as chemotherapeutic agents. DNA binding drugs predominately accumulate in chromosomal DNA, however, some exert their anti-cancer effects by intercalating mitochondrial DNA [29]. Chemotherapeutic agents binding with mDNA have been shown to interfere with mitochondrial function leading to a depletion of ATP. Quenching the fluorescent signaling of DNA binding agents with propidium bromide and Hoescht 33342 have been used to monitor accumulation of DNA binding drugs. PicoGreen, which selectively labels both nuclear and mDNA is used to monitor the accumulation of drugs in mDNA [29].
We utilized PicoGreen quenching studies to assess if Ym155 accumulates in mDNA in the A549 cells. PicoGreen fluorescent signaling was found in the nucleus and cytoplasm of cells, suggesting it bound mDNA (Fig. 6A). Dual immunfluorescent imaging of PicoGreen with the mitochondrial marker TUMF1 showed co-localization of PicoGreen with TUMF1, confirming PicoGreen accumulation in mDNA (Fig. 6A). Increasing concentrations of Ym155 showed a dose-responsive quenching of PicoGreen fluorescence in the mDNA (Fig. 6B-C).
To assess whether Ym155 may affect mitochondrial function directly, we examined whether ATP was depleted in H1299 cells following treatment with Ym155. Low dose of Ym155 (20 nM) caused a small decrease in ATP levels at 3h, which after 24h was substantially lower than DMSO (Fig. 6D). Ym155 caused a dose-related decrease in ATP levels as early as 3h in H1299 cells (Fig. 6E). These studies show for the first time that anti-cancer effects of Ym155 involve binding mDNA causing mitochondrial dysfunction.
Synergy of Ym155 and JL5 in primary NSCLC
Primary NSCLC were obtained directly from 5 surgically resected lung tumors. Tumors 1, 2, 3 and 5 were adenocarcinomas and tumor 4 was a squamous carcinoma. Tumors were immediately gently digested and plated for cell culture. After approximately 10 days the cells they were treated with JL5 and Ym155 alone and in combination for 48h. Primary cancer cells were examined for changes in cell survival, regulation of BMP signaling, and nuclear localization of AIF.
The combination of JL5 and Ym155 caused an increase in cell death compared to DMSO control in 5 of 5 tumors (Fig. S5A). In 3 of 5 tumors, the combination of JL5 and Ym155 induced cell death that was greater than either compound alone (Fig. S5A). XIAP was utilized as a marker of the downregulation of BMPR2 Smad-1/5 independent signaling. The combination of JL5 and Ym155 synergistically decreased the expression of XIAP in 3 of 5 tumors (tumors 1-3), which corresponded to the tumors that JL5 in combination with Ym155 resulted in enhanced cell death (Fig. S5A-B). In tumors 3 and 4, Ym155 alone caused a decrease in the expression of XIAP that was not enhanced further with JL5 (Fig. S5A-B).
AIF nuclear localization was examined in primary lung tumors 2-5. AIF nuclear staining was not seen in primary tumors treated with DMSO or JL5 (Fig. S5C-D). Only a small percentage of cells from the primary lung tumors treated with Ym155 demonstrated nuclear staining with AIF (0-10%). AIF nuclear staining occurred predominantly in primary tumors that demonstrated synergistic cell death with the combination of JL5 and Ym155 (tumors 2 and 3, 67% and 25% of cells, respectively) (Fig. S5C-D). Nuclei that stained with AIF showed chromosome condensation and were smaller (Fig. S5C, tumor 2). Tumors that did not show synergy with JL5/Ym155 (tumors 4 and 5), the nuclei were smaller but did not stain with AIF (Fig. S5C, tumor 4).