Although the microcosm biofilm model is a well-established practice, there are several differences between the protocols, as for example the growth atmosphere. Accordingly, the atmosphere that better represents oral conditions needs to be investigated. This study did not aim to validate a type of atmosphere based on the oral environment since no comparison was made between the tested protocol and in vivo conditions. This study intended to check the differences between the atmospheric models (with or without O2), in vitro, and their relevance in the development of artificial dental caries.
Some minor differences were observed among the atmospheric conditions, but they were able to produce very similar carious lesions in both enamel and dentin. Furthermore, most atmospheres were able to differentiate between CHX and PBS, which is essential outcome, since the antimicrobial effect of CHX has been well established (Shapiro et al. 2002).
From a microbiological perspective, to analyze the effect of the atmosphere on the microorganisms from the microcosm biofilm, we selected CFU counting, which is a well-established, reproducible, and simple quantitative method (van Houte et al. 1993). However, it is not as precise and sensitive as PCR- Polymerase chain reaction method and does not provide an overview of the entire microbiota (Tanner et al. 2018). Based on the findings of the CFU count, there was a lesser number of Lactobacillus spp. and S. mutans observed under the microaerophilic than in the anaerobic environment, especially for enamel. The differences less than 0.2 log10 CFU/mL might be clinically irrelevant and, in fact, they were important when TMR data were taken into account.
Both bacteria were chosen because they are highly established cariogenic species (Gao et al. 2016). A limitation of the study is that other species, which might be present in the microcosm biofilm, were not examined. Therefore, future studies using “omics” are desirable, especially to understand the reason that CHX did not reduce Lactobacillus spp. in microcosm biofilms produced on dentin. Interestingly, the number of total microorganisms was reduced under anaerobic conditions for CHX. This led to speculations regarding the contribution of other species. Herein, it is important to consider that the term total microorganism does not include species that require supplementation for their growth on BHI agar.
The association between lactobacilli and dental caries dates back to a century (Kligler 1915; Caufield et al. 2015). In another study, 0.2% chlorhexidine, utilized in an in situ model, was not able to reduce the CFU count for lactobacilli on dentin specimens when compared with the control (van Strijp et al., 1997). The author suggested that dentin can act as a "shelter” for this bacterium against the action of chlorhexidine (van Strijp et al., 1997).
The outside atmosphere had little impact on the microbiological analysis of the microcosm biofilms because the biofilm itself can create its atmosphere, with the deeper layers rich in strict anaerobic microorganisms and the superficial layers rich in facultative microorganisms (Diaz et al. 2006; Schoilew et al. 2019). Although dental biofilms are composed primarily of obligate anaerobic species with preferential growth in the presence of carbon dioxide (CO2), these microorganisms may be protected from the toxic effects of oxygen, enabling their growth under microaerophilic conditions (Bradshaw et al. 1997; Sim et al. 2016). It should be noted that the findings of this study cannot be extrapolated to monospecies or other multispecies models.
Despite knowing the microbiological composition of the biofilm, it was clear by the tooth lesion analysis that even in the presence of different species, the set of metabolic products released into the biofilms under different atmospheres was able to induce similar artificial carious lesions. Metabolome analysis could be better used to discuss the results; however, the most important response variable is related to the tooth (TMR data).
Regarding enamel demineralization, the mineral loss (integrated and mean) was similar among different atmospheres; however, the anaerobic condition induced a deeper lesion, showing that in this case, the acids could have penetrated deeper into the environment, which may be related to the metabolic profile of the biofilm. While dentin lesion depth was similar among the atmospheres, dentin mineral loss (integrated and mean) was lower for anaerobic than for microaerophilic and mixed atmospheres, which behaved similarly. Therefore, as previously discussed, the metabolic products (primarily acids) induced by the anaerobic biofilm may have been neutralized by the organic content of dentin (Takahashi 2015; Wicaksono et al. 2020).
The mixed biofilm model was first performed by Braga et al. (2021), but with a different sequence: the first three days in an anaerobic and the last two days in a microaerophilic atmosphere. In their study, the biofilm model was able to differentiate CHX from PBS. The results of this study warrant further metabolome analysis to better explain the slight differences found in CFU counting and TMR analysis.
For both tissues, especially enamel, lesions induced in the absence of treatment (PBS group) were highly demineralized, and most of them were cavitated (about 85–100% for enamel and 31–55% for dentin), with no differences among the atmospheres. It is suggested that the higher cavitation of enamel is due to its lower organic content compared to dentin, which plays an important role in the modulation of de-mineralization progression. Also, the percentage of prevention fraction of CHX was much higher for enamel (~ 78%) than for dentin (~ 22%), which may be related to the high degree of de-mineralization of the enamel and the type of interaction of CHX with the biofilm, in agreement with previous reports (Santos et al. 2019; Braga et al. 2020; Pelá et al. 2021).
Our results provide new information about the effect of the atmosphere on microcosm biofilm growth and its potential to induce tooth demineralization. These different protocols should be analyzed in the future to identify their impact on the results and interpretation of metabolome. In addition, the biofilm should be analyzed by laser scanning microscopy or scanning electron microscopy using the 3D architecture of the biofilm to identify if the specific organization of microbial communities could be created by different atmospheric conditions.