Cell culture
Human PDLSCs were isolated from extracted premolars and impacted third molars where obtained from systemically healthy adults for orthodontic purpose (18–25 years of age) with written informed consent and, and was under approved guidelines set by the Ethics Committee of Tianjin Medical University Stomatological Hospital. Primary cells were cultured as previously reported [13]. All HPDLSCs used in this study were at passage 3–5.
Murine osteocyte-like (MLO-Y4) cells were cultured in α-MEM containing 5% fetal bovine serum and 5% calf serum with penicillin-strepomycin in flasks precoated with rat tail collagen type I.
Characterization of HPDLSCs
HPDLSC surface markers were analyzed by flow cytometry. HPDLSCs (P4) were trypsinized and adjusted to 5 × 106 cells/mL, and 1 µg of antibody (CD45, CD146, CD90 and CD73; eBioscience, San Jose, CA, USA) was added to 200 µl of cell suspension. The samples were incubated at 4 °C in the dark for 2 h and centrifuged at 800 r/min for 5 min. The supernatant was discarded, and the cell pellet was washed twice with PBS and resuspended in 200 µl of PBS for flow cytometry analysis (Beckman Coulter, CA, USA).
Mechanical strain loading on MLO-Y4 cells
FBS was centrifuged at 4000 × g for 15 min and then at 100,000 × g for 70 min to sediment and concentrate EVs followed by filtration through a 0.22 µm filter membrane for exosome-depleted FBS preparation. Cells were exposed to mechanical strain (MS) by the Flexcell Tension Plus system (FX-4000T, Flexcell International, Burlington, NC). MLO-Y4 cells were seeded into 6-well Bioflex plates (Flexcell International, Burlington, NC) at a density of 1 × 105 cells/well and incubated for 24 h. The cells were then replaced with culture medium containing 10% exosome-depleted FBS. The experimental group was subjected to cyclic stretch with 8% shape variable at a frequency of 0.1 Hz for 30 min and the cell culture supernatant was collected after 24 h. The same operation was performed again in the next 3 days. The supernatant from the control groups was collected every 24 h for 3 days.
Exosomes isolation, purification and identification from MLO-Y4 cell culture supernatants
Briefly, cell culture supernatants were centrifuged at 300 × g for 15 min to remove cells, filtered through a 0.22 µm filter membrane to remove cellular debris, and ultracentrifuged at 100,000 × g for 70 min. The isolated pure exosomes were collected and stored at − 80 °C for future use.
Nanoparticle tracking analysis (NTA), transmission electron microscopy (TEM), and western blotting were used to identify the collected particles. Absolute size distribution of exosomes was directly tracked by the NanoSight NS 300 system (NanoSight Technology, Malvern, UK). The collected exosomes were adjusted to 106/ml. Under 450 nm laser irradiation, the camera recorded for 1 min at 25 frames/second, and this process was repeated 3 times. According to the Brownian motion of exosomes, the Einstein equation was used to calculate the concentration and hydrodynamic diameter of the exosomes.
The morphology and diameter of exosomes were investigated using TEM (Hitachi HT7700 TEM, Tokyo, Japan). The exosome sample (10 µl) was placed on a copper net with a pore size of 2 nm followed by incubation at room temperature for 2 min. Filter paper was used to drain the liquid from the side of the filter. The sample was then negatively stained with 2% phosphotungstic acid solution (pH 7.0) for 1 min and then submitted to TEM for observations.
In addition, the exosomal surface-specific proteins CD63, CD81 and Alix were detected by western blot.
Cell viability and proliferation assay
Cell proliferation was measured using the Cell Counting Kit-8 (Dojindo, Japan) according to the manufacturer instruction. HPDLSCs were cultured in a 96-well plate (2 × 104 cells/well) and subjected to the following treatments: PBS, Porphyromonasgingivalis lipopolysaccharide (Pg.LPS) (San Diego, CA, USA) (1 µg/mL), LPS + exosomes from normally cultured cells (Exosome); exosomes from MS-treated cells (Exosome-MS), and combination of LPS + Exo-MS. The OD value was recorded from day 0 to day 4 of culture. The absorbance was measured using a microplate reader (Bio-Tek, USA) at a wavelength of 450 nm.
5-Ethynyl-2'-deoxyuridine (EdU) staining
DNA replication activity was evaluated by EdU apollo 567 in vitro kit (Solarbio, Beijing, China) to further confirm the HPDLSC proliferation rate according to the manufacturer’s instructions. HPDLSCs were plated into a glass-bottom plate at a density of 1 × 105 cells and treated by working solution for 24 h. Cell culture medium of all groups was replaced with the mixture and incubated at 37 °C for 2 h. After incubation, cells were fixed with 4% paraformaldehyde at 4 °C for 30 min and then washed three times with PBS. Cells were permeabilized with 0.1% Triton X-100 for 2 min on ice and washed twice with PBS. Nuclei were stained with DAPI (Sigma, USA). Images were captured with a confocal fluorescence microscope.
Osteogenic differentiation assay
HPDLSCs in different groups (2 × 105 cells/well) were cultured in 6-well plates containing osteogenic differentiation medium (Cyagen, Suzhou, China). The medium was refreshed every 3 days until the 21st day. Cells were fixed with 4% paraformaldehyde. Mineralized nodules were observed by staining with a 1% Alizarin red solution (Cyagen, Suzhou, China). The activity of alkaline phosphatase (ALP) was analyzed using an Alkaline Phosphatase Staining Kit (MKbio, Shanghai, China). Staining images were acquired using an inverted microscope, and ImageJ was used to analyze the images.
High-throughput miRNA sequencing
The high-throughput sequencing service and subsequent bioinformatics analysis were provided by BGI Biotech (Shenzhen, China). Briefly, miRNA was purified from exosome total RNA using the TaqMan ABC miRNA Purification Kit (Thermo Scientific, USA) following the manufacturer's instructions. RNA libraries were generated and sequencing was performed using BGISEQ-500. The differential expressed miRNA was identified by BGI with the value of log2-Ratio > 1 and Q value < 0.001. Gene ontology and KEGG pathway analyses were based on NCBI.
miRNA fluorescence in situ hybridization (FISH)
The subcellular localization of miRNA was determined by FISH, which was conducted as previously reported [14]. The FAM-5’-CCCACCGACAGCAATGAATGT-3’ probe was synthesized from the sequence of miR-181b-5p. In situ hybridization was conducted according to the instructions of the FISH Detection Kit (QIAGEN, Germany) followed by counterstain with DAPI. Images were acquired with a confocal fluorescence microscope.
Transient transfection
HPDLSCs were seeded into 6-well plates (5 × 105 per well) and incubated for 24 h. Cells were either left untreated or transiently transfected with miR-181b‐5p mimics, mimics NC, inhibitors and inhibitors NC (Ribobio, Guangzhou, China) using Lipofectamine 2000 (Invitrogen, USA) according to the manufacturer’s instructions. Briefly, miR‐181b‐5p mimics (50 nM), mimics NC (50 nM), inhibitors (100 nM), and inhibitors NC (100 nM) were separately mixed with diluted Lipofectamine 2000 at room temperature for 20 min. The mixtures were then cultured with cells for 48 h. The following sequences were used: miR‐181b‐5p mimics NC sense 5’-UUC UCC GAA CGU GUC ACG UTT-3’ and antisense 5’-ACG UGA CAC GUU CGG AGA ATT-3’’ miR‐181b‐5p inhibitor 5’-ACCCACCGACAGCAAUGAAUGUU-3’; and miR-181b-5p inhibitor NC 5’-CAG UAC UUU UGU GUA GUA CAA-3’.
Luciferase reporter assay
TargetScan, microT, PITA and miRanda were used to predict the potential miR-181b-5p-binding site in the 3' untranslated region (3'-UTR) of the wild and mutant PTEN gene. HPDLSCs were seeded into 24-well plates (1 × 105 per well) for the luciferase reporter assays, and cells in each well were cotransfected with a pmir-GLO Dual-Luciferase miRNA Target Expression Vector (containing a wild-type or mutant PTEN 3'UTR; Promega, USA) and miR-181b-5p mimics, mimics-NC, inhibitor or inhibitor-NC using the Attractene Transfection Reagent Kit (Invitrogen, USA). The luciferase activity was assayed using a Dual Luciferase Reporter Assay Kit (Promega, USA) 24 h posttransfection according to the manufacturer's instructions.
Biotin-coupled miRNA capture
Because PTEN plays an important role in regulating cell proliferation and is one of the miR-181b-5p target genes, a pull-down assay was performed to investigate whether miR-181b-5p directly binds to PTEN. Briefly, HPDLSCs were transfected with biotinylated miRNA mimics or nonsense control (NC) (GenePharma, Shanghai, China), and cells were collected at 48 h after transfection. The biotin-conjugated RNA complex was pulled down using streptavidin-coated magnetic beads (Pierce Biotechnology, USA). The bound mRNA was purified using a RNeasy Mini Kit (QIAGEN, Germany). The enrichment of PTEN mRNA was evaluated by Real-Time PCR analysis.
Western blotting assay and antibodies
Cells were lysed using RIPA buffer to obtain total protein, and exosomal protein was extracted using a ProteoPrep® Total Extraction Sample Kit (Sigma-Aldrich, USA) following the manufacturer’s protocol. Protein concentration was measured using a BCA Protein Assay Kit (Thermo Fisher Scientific, USA). Equivalent amounts of proteins were then electrophoresed on SDS-PAGE and transferred onto PVDF membranes. Membranes were blocked using 5% BCA for 2 h at room temperature and incubated with primary antibodies at 4 °C overnight. After three PBST washes, membranes were incubated with secondary antibodies at 37 °C for 1 h. ECL solution was then prepared, and the bands on the membranes were scanned and imaged in a dark room. The results were quantified using ImageJ. GAPDH was used as an internal control.
Real-time reverse transcriptase polymerase chain reaction
Total RNA was extracted from the cells using TRIzol reagent (Invitrogen, USA). The concentration and purity of the RNA were measured using a NanoDrop One Microvolume UV-Vis Spectrophotometer (Thermo Fisher Scientific, USA) according to the manufacturer's instruction. The Prime Script RT Reagent Kit (TaKaRa, Japan) was used for reverse transcription according to the manufacturer's instructions. The SYBR Premix Ex Taq II Kit (TaKaRa, Japan) was used for real-time PCR analysis using the Roche Light Cycler 480 sequence detection system (Roche Diagnostics, Switzerland). GAPDH or U6 + miR16 was used as an internal control.
Statistical analysis
All data were presented as the means ± standard deviation (SD). The data of each group were tested for homogeneity, and the results were analyzed by one-way analysis of variance and minimum significant difference test (Fisher’s least significant difference [LSD]). P < 0.05 was considered as statistically significant. All statistical analyses were performed using SPSS 23.0 (IBM Corp., USA).