Reagent
MCE Chemicals (State of New Jersey, USA) supplied DKM2-93 (98.87%), 3-Methyladenine (3-MA), Thapsigargin (TG), E64d, and pepstatin A. Sigma Chemical provided chloroquine (CQ) dissolved in 0.1% dimethyl sulfoxide (DMSO). Recombinant mouse IL-1β was obtained from the R&D system (Minneapolis Research and Development Center, Minneapolis, Minnesota, USA). Fetal bovine serum (FBS) and Dulbecco’s modified Eagle’s medium (DMEM/F12) were provided by Gibco (New York, NY, USA). Anti-COL2A1 and Anti-UBA5 were purchased from Proteintech Group (Wuhan, China); Anti-MMP13 was purchased from Abcam (Cambridge, UK). Anti-β-Actin, anti-MMP3, FITC-labeled goat anti-rabbit secondary antibodies, cy3-labeled goat anti-mouse secondary antibodies, trypsin, and type II collagenase were purchased from Boster (Wuhan, China). Cell Signaling Technology (Beverly, USA) provided SQSTM-1, LC3 II/I, and Ubiquitin. Abclonal (Wuhan, China) provided PERK, P-PERK, ATF4, BiP/GRP78, and IRE1.
Isolation and culture of mouse chondrocytes
Chondrocytes were obtained from knee cartilage of 5-day-old C57BL/6J mice (from Tongji medical college, Wuhan, China). Chondrocytes from isolated knee cartilage were incubated with 0.25% trypsin-EDTA for 30 minutes in a 37℃ incubator; after trypsin removal and incubation with 0.2% collagenase for 6–8 h, chondrocytes were collected and cultured in DMEM/F12 medium containing 10% fetal bovine serum. The medium was changed every two days. Cultured first and second-generation chondrocytes were used for experiments after 80% of the cells reached 80% in the flasks.
Cellular activity and drug toxicity assays
A cell counting kit (CCK8, Boster, China) was used to measure DKM2-93's effects on chondrocyte activity. Inoculation of chondrocyte suspensions (100 µL/well) in 96-well plates was carried out for 24 hours. DKM2-93, a selective inhibitor of UBA5, was applied to chondrocytes for 6 h, 12 h, 18 h, and 24 h. After washing the cells with PBS, CCK8 solution was added and incubated for one hour at 37°C. An enzyme meter (Molecular facility in Sunnyvale, California) measured absorbance at 450 mm wavelength.
Histopathological evaluation
The knee joints of mice were collected after they were injected with 1% sodium pentobarbital intraperitoneally. After the knee muscles and skin were removed, the knee joint was fixed in 4% paraformaldehyde for 24 hours, decalcified in decalcifying solution for 25 days, embedded in paraffin, and the medial joint space of the knee joint was cut using a microscopic cutter (LeicaBios systems, USA). The sections were stained with safranin-O, toluidine blue, and HE. According to the recommendations of the Osteoarthritis Research Society International (OARSI), cartilage degeneration in mice was histologically graded according to the severity of cartilage damage. A grading system was used to determine the severity of synovitis. A scoring system was developed by two independent investigators who did not know the grouping; immunohistochemistry was performed as previously described, and sections were incubated with antibodies against MMP3, MMP13, COL2A1, and UBA5(18).
siRNA
Designed and synthesized siRNAs for mouse UBA5, GABARAP genes (RiboBio, Guangzhou, China), UBA5 sequence is sense strand 5'-GTCCACAACTACAATATCA-3'. Sequence of GABARAP is: sense strand 5' GTACCAGGAACACCATGAA-3'. After inoculation into six-well plates, chondroblasts were transfected for 48 hours with lipofectamine 3000 siRNA transfection reagent from Thermo Fisher.
Adeno-associated viruses and overexpression plasmids
Mouse UBA5 gene of AAV9-UBA5 and AAV9-GFP were purchased from Jikai Gene, Shanghai, China. A plasmid overexpressing the mouse UBA5 gene was designed and synthesized by Jiman Gene, Shanghai, China, and the sequence was senses trand5'-GTCCACAACTACAATATCA-3'. We constructed the UBA5 overexpression plasmid according to the instructions, and we used Lipo3000 and P3000 to transfect chondrocytes for 48h using the liposome transduction method.
Western blot
The cells were washed three times with phosphate-buffered saline (PBS), placed on ice, and lysed for 30 minutes in RIPA lysis buffer containing a 1% protease inhibitor phosphatase inhibitor mixture. The protein samples were separated by 10% or 12% sodium dodecyl sulfate-polyacrylamide gel electrophoresis (SDS-PAGE) and transferred to PVDF membranes (Millipore, Billerica, MA), which were blocked in 5% BSA for 60 min, incubated overnight in specific primary antibody. The membranes were incubated in a 1:5000 dilution of membranes incubated in 1:5000 dilution of horseradish peroxidase-conjugated secondary antibody (BA2913, Boster, Wuhan, China) for 60 min, washed three times with TBST, and then incubated with Western ECL Substrate Kit. The protein bands were visualized by Bio-Rad scanner (Hercules, CA) and subsequently analyzed by ImageJ.
Immunofluorescence
We inoculated chondrocytes into 24-well plates, fixed them with 4% paraformaldehyde at room temperature for 10 minutes, washed them three times with PBS, permeabilized them with 0.1% TritonX-100 for 10 minutes, and closed the wells with 5% BSA at room temperature for 1 hour. In the dark room, we incubated chondrocytes for 1h with FITC goat anti-rabbit secondary antibodies, washed them three times with PBS, stained them with DAPI for 10 minutes, and blocked them for 10 minutes. The images were taken with a fluorescence microscope (Evosfl AUTO, Life Technologies, USA).
Reactive oxygen (ROS)testing
A Reactive Oxygen Species Assay Kit (S0033, Beyotime, Wuhan, China) was used to measure cellular ROS levels. By detecting DCF fluorescence through fluorescence microscopy, the researchers confirmed the level of intracellular reactive oxygen species by oxidizing non-fluorescent DCFH to generate fluorescent DCF.
Mitochondrial membrane potential detection
A mitochondrial membrane potential assay kit with JC-1 probe was used to detect mitochondrial transmembrane potential (MMP) changes. A decrease in cell membrane potential can be easily detected by the change in the color of JC-1 from red to green, and the change in color of JC-1 can also be used as an indicator of early apoptosis.
Co-immunoprecipitation (Co-IP)
After removing insoluble precipitate from chondrocytes, 1–2 µg of UBA5 or GABARAP antibody or rabbit IgG389 (B900610, Proteintech, china) was added and incubated for 16 h at 4°C. Protein A/G magnetic beads (HY-K0202, MCE) were added and incubated at 4°C for 4 hours. We washed the proteins four times in 1XPBS, precipitated them at 95°C for 10 min, separated the proteins using SDS-PAGE gels, and analyzed them by protein blotting.
TUNEL staining
The level of apoptosis was detected using TUNEL staining. We stained sections with the TUNEL Apoptosis Detection Kit (Alexa Fluor 488, Yeeasen, China), stained cell nuclear with DAPI, and observed images under a fluorescence microscope (Evosfl AUTO, Life Technologies, USA).
Transmission electron microscope observation of mitochondrial morphology
The chondrocytes were fixed in 2.5% glutaraldehyde fixative at room temperature, protected from light for 5 minutes, scraped off with a cell scraper, and centrifuged for 2 minutes at 2500 rpm. Use new electron microscope fixative, fix for 30 minutes at room temperature, avoid light, store at 4 ℃, and observe using Hitachi TEM.
Animal experiments procedure
This study used forty-eight 7-week-old (23g ± 2g) male pathogen-free C57BL/6 mice, which were approved by the ethical committee of Tongji Hospital, Tongji Medical College, and Huazhong University of Science and Technology, China. C57BL/6J mice were randomly divided into 6 groups (n = 8): Sham group, sham + AAV9-GFP group, AAV9-GFP + DMM group, DMM group, AAV9-UBA5 + Sham group, AAV9-UBA5 + DMM group. The adeno-associated virus was injected into the joint cavity of mice requiring injections of AAV9-GFP and AAV9-UBA5. For the expression of the relevant genes, all mice were kept for two weeks. Sterilization, anesthesia with 1% sodium pentobarbital intraperitoneally, and supine immobilization were performed routinely before surgery. As part of the sham-operated group, the skin was performed, but DMMs were not performed. According to the published protocol, a transection of the medial meniscal ligament and medial collateral ligament (DMM) caused joint instability in mice without damaging other ligaments(18, 19). animals were euthanized 8 weeks after surgery.
Statistical Analysis
In order to conduct statistical analysis, GraphPad Prism 7.0 was used, and the results are presented as mean ± standard deviation (SD). ANOVA and Student tests were used to compare two or more groups of data. p < 0.05 was considered to be a statistically significant difference.