Alvarez-Ordonez A, Fernandez A, Bernardo A, Lopez M (2009) Comparison of acids on the induction of an Acid Tolerance Response in Salmonella typhimurium, consequences for food safety. Meat Science 81:65-70 doi:https://doi.org/10.1016/j.meatsci.2008.06.019
Bajaj V, Lucas RL, Hwang C, Lee CA (1996) Co-ordinate regulation of Salmonella typhimurium invasion genes by environmental and regulatory factors is mediated by control of hilA expression. Mol Microbiol 22:703–714 doi:https://doi.org/10.1046/j.1365-2958.1996.d01-1718.x
Bakowski MA, Cirulis JT, Brown NF, Finlay BB, Brumell JH (2007) SopD acts cooperatively with SopB during Salmonella enterica serovar Typhimurium invasion. Cell Microbiology 9:2839-2855 doi:https://doi.org/10.1111/j.1462-5822.2007.01000.x
Barbosa FdO et al. (2017) Contribution of flagella and motility to gut colonisation and pathogenicity of Salmonella Enteritidis in the chicken. Braz J Microbiol 48:754-759 doi:https://doi.org/10.1016/j.bjm.2017.01.012
Barker CS, Meshcheryakova IV, Inoue T, Samatey FA (2014) Assembling flagella in Salmonella mutant strains producing a type III export apparatus without FliO. J Bacteriol 196:4001-4011 doi:https://doi.org/10.1128/JB.02184-14
Bäumler AJ, Tsolis RM, Heffron F (1996) The lpf fimbrial operon mediates adhesion of Salmonella typhimurium to murine Peyer’s patches. Proceedings of the National Academy of Sciences of the United States of America 93:279–283 doi:https://doi.org/10.1073/pnas.93.1.279
Bender JK, Wille T, Blank K, Lange A, Gerlach RG (2013) LPS Structure and PhoQ Activity Are Important for Salmonella Typhimurium Virulence in the Gallleria mellonella Infection Model. PLOS ONE 8:e73287 doi:https://doi.org/10.1371/journal.pone.0073287
Boonyom R, Karavolos MH, Bulmer DM, Khan CM (2010) Salmonella pathogenicity island 1 (SPI-1) type III secretion of SopD involves N- and C-terminal signals and direct binding to the InvC ATPase. Microbiology 156:1805-1814 doi:https://doi.org/10.1099/mic.0.038117-0
Boyd EF, Li J, Ochman H, Selander RK (1997) Comparative genetics of the inv-spa invasion gene complex of Salmonella enterica. J Bacteriol 179:1985-1991 doi:https://doi.org/10.1128/jb.179.6.1985-1991.1997
Brumell JH, Kujat-Choy S, Brown NF, Vallance BA, Knodler LA, Finlay BB (2003) SopD2 is a novel type III secreted effector of Salmonella typhimurium that targets late endocytic compartments upon delivery into host cells. Traffic 4:36-48 doi:https://doi.org/10.1034/j.1600-0854.2003.40106.x
Casaz P, Garrity-Ryan LK, McKenney D, Jackson C, Levy SB, Tanaka SK, Alekshun MN (2006) MarA, SoxS and Rob function as virulence factors in an Escherichia coli murine model of ascending pyelonephritis. Microbiology 152:3643-3650 doi:https://doi.org/10.1099/mic.0.2006/000604-0
Cascales E (2017) Inside the chamber of secrets of the type III secretion system. Cell 168:949-951 doi:https://doi.org/10.1016/j.cell.2017.02.028
Chen L et al. (2016) High-resolution QTL mapping for grain appearance traits and co-localization of chalkiness-associated differentially expressed candidate genes in rice. Rice 9:1-17 doi:https://doi.org/10.1186/s12284-016-0121-6
Chevance FFV, Hughes KT (2008) Coordinating assembly of a bacterial macromolecular machine. Nature Reviews Microbiology 6:455-465 doi:https://doi.org/10.1038/nrmicro1887
Chilcott GS, Hughes KT (2000) Coupling of flagellar gene expression to flagellar assembly in Salmonella enterica serovar Typhimurium and Escherichia coli. Microbiol Mol Biol Rev 64:694–708 doi:https://doi.org/10.1128/MMBR.64.4.694-708.2000
Clouthier SC, Müller KH, Doran JL, Collinson SK, Kay WW (1993) Characterization of three fimbrial genes, sefABC, of Salmonella enteritidis. J Bacteriol 175:2523-2533 doi:https://doi.org/10.1128/jb.175.9.2523-2533.1993
Coombes BK et al. (2007) SseL is a Salmonella-specific translocated effector integrated into the SsrB-controlled Salmonella pathogenicity island 2 type III secretion system. Infect Immun 75:574-580 doi:https://doi.org/10.1128/IAI.00985-06
Crawford RW, Reeve KE, Gunn JS (2010) Flagellated but not hyperfimbriated Salmonella enterica serovar Typhimurium attaches to and forms biofilms on cholesterol-coated surfaces. J Bacteriol 192:2981-2990 doi:https://doi.org/10.1128/JB.01620-09
Duval V, Lister I (2013) MarA, SoxS and Rob of Escherichia coli – global regulators of multidrug resistance, virulence and stress response. International journal of biotechnology for wellness industries 2:101-124 doi:https://doi.org/10.6000/1927-3037.2013.02.03.2
Ekdahl K, de Jong B, Wollin R, Andersson Y (2005) Travel-associated non-typhoidal salmonellosis: geographical and seasonal differences and serotype distribution. Clin Microbiol Infect 11:138-144 doi:https://doi.org/10.1111/j.1469-0691.2004.01045.x
Erhardt M, Namba K, Hughes KT (2010) Bacterial nanomachines: The flagellum and type III injectisome. Cold Spring Harbor Perspectives in Biology 2:a000299 doi:https://doi.org/10.1101/cshperspect.a000299
Fabrega A, Vila J (2013) Salmonella enterica serovar Typhimurium skills to succeed in the host: virulence and regulation. Clin Microbiol Rev 26:308-341 doi:https://doi.org/10.1128/CMR.00066-12
Fortune DR, Suyemoto M, Altier C (2006) Identification of CsrC and characterization of its role in epithelial cell invasion in Salmonella enterica serovar Typhimurium. Infect Immun 74:331-339 doi:https://doi.org/10.1128/IAI.74.1.331-339.2006
Freeman JA, Ohl ME, Miller SI (2003) The Salmonella enterica serovar typhimurium translocated effectors SseJ and SifB are targeted to the Salmonella-containing vacuole. Infect Immun 71:418-427 doi:https://doi.org/10.1128/IAI.71.1.418-427.2003
Gelli M, Konda AR, Liu K, Zhang C, Clemente TE, Holding DR, Dweikat IM (2017) Validation of QTL mapping and transcriptome profiling for identification of candidate genes associated with nitrogen stress tolerance in sorghum. BMC Plant Biology 17:123 doi:10.1186/s12870-017-1064-9
Hardt WD, Chen LM, Schuebel KE, Bustelo XR, Galan JE (1998) S. typhimurium encodes an activator of Rho GTPases that induces membrane ruffling and nuclear responses in host cells. Cell 93:815-826 doi:https://doi.org/10.1016/S0092-8674(00)81442-7
Hendriksen RS, Vieira AR, Karlsmose S, Lo Fo Wong DM, Jensen AB, Wegener HC, Aarestrup FM (2011) Global monitoring of Salmonella serovar distribution from the World Health Organization Global Foodborne Infections Network Country Data Bank: results of quality assured laboratories from 2001 to 2007. Foodborne Pathogens and Disease 8:887-900 doi:10.1089/fpd.2010.0787
Kamanova J, Sun H, Lara-Tejero M, Galan JE (2016) The Salmonella effector protein SopA modulates innate immune responses by targeting TRIM E3 ligase family members. PLoS Path 12:e1005552 doi:https://doi.org/10.1371/journal.ppat.1005552
Knuff K, Finlay BB (2017) What the SIF is happening—the role of intracellular Salmonella-induced filaments. Frontiers in Cellular and Infection Microbiology 7 doi:https://doi.org/10.3389/fcimb.2017.00335
Kong Q, Yang J, Liu Q, Alamuri P, Roland KL, Curtiss R (2011) Effect of deletion of genes involved in lipopolysaccharide core and O-antigen synthesis on virulence and immunogenicity of Salmonella enterica serovar Typhimurium. Infect Immun 79:4227 doi:https://doi.org/10.1128/IAI.05398-11
Lawhon SD, Frye JG, Suyemoto M, Porwollik S, McClelland M, Altier C (2003) Global regulation by CsrA in Salmonella typhimurium. Mol Microbiol 48:1633-1645 doi:https://doi.org/10.1046/j.1365-2958.2003.03535.x
Ledeboer NA, Frye JG, McClelland M, Jones BD (2006) Salmonella enterica serovar Typhimurium requires the lpf, pef, and tafi fimbriae for biofilm formation on HEp-2 tissue culture cells and chicken intestinal epithelium. Infect Immun 74:3156 doi:https://doi.org/10.1128/IAI.01428-05
Lee J-J, Hsuan S-L, Kuo C-J, Wu Y-C, Chen T-H (2015) MarA and ramA regulate virulence in Salmonella enterica serovar Choleraesuis. Vet Microbiol 181:323-327 doi:https://doi.org/10.1016/j.vetmic.2015.09.006
Li R, Yu C, Li Y, Lam TW, Yiu SM, Kristiansen K, Wang J (2009) SOAP2: an improved ultrafast tool for short read alignment. Bioinformatics 25:1966-1967 doi:https://doi.org/10.1093/bioinformatics/btp336
Lianou A, Nychas G-JE, Koutsoumanis KP (2017) Variability in the adaptive acid tolerance response phenotype of Salmonella enterica strains. Food Microbiol 62:99-105 doi:https://doi.org/10.1016/j.fm.2016.10.011
Mandilara G et al. (2017) A severe gastroenteritis outbreak of Salmonella enterica serovar Enteritidis PT8, with PFGE profile XbaI.0024 and MLVA profile 2-9-7-3-2 following a christening reception, Greece, 2016. Epidemiol Infect 146:28-36 doi:https://doi.org/10.1017/S0950268817002667
McGhie EJ, Brawn LC, Hume PJ, Humphreys D, Koronakis V (2009) Salmonella takes control: effector-driven manipulation of the host. Curr Opin Microbiol 12:117-124 doi:https://doi.org/10.1016/j.mib.2008.12.001
Minamino T (2014) Protein export through the bacterial flagellar type III export pathway. Biochim Biophys Acta 1843:1642-1648 doi:https://doi.org/10.1016/j.bbamcr.2013.09.005
Nevola JJ, Stocker BA, Laux DC, Cohen PS (1985) Colonization of the mouse intestine by an avirulent Salmonella typhimurium strain and its lipopolysaccharide-defective mutants. Infect Immun 50:152-159
Newman SL, Will WR, Libby SJ, Fang FC (2018) The curli regulator CsgD mediates stationary phase counter-silencing of csgBA in Salmonella Typhimurium. Mol Microbiol 108:101-114 doi:https://doi.org/10.1111/mmi.13919
Oguri T et al. (2019) A family of small intrinsically disordered proteins involved in flagellum-dependent motility in Salmonella enterica. J Bacteriol 201:e00415-00418 doi:https://doi.org/10.1128/JB.00415-18
Pavlova M et al. (2018) Investigation of Salmonella enteritidis outbreak in four kindergartens. Le infezioni in medicina 26:316-320
Phoebe Lostroh C, Lee CA (2001) The Salmonella pathogenicity island-1 type III secretion system. Microb Infect 3:1281-1291 doi:https://doi.org/10.1016/S1286-4579(01)01488-5
Quan G et al. (2019) Fimbriae and related receptors for Salmonella Enteritidis. Microb Pathog 126:357-362 doi:https://doi.org/10.1016/j.micpath.2018.10.025
Quinteiro-Filho WM et al. (2012) Heat stress impairs performance and induces intestinal inflammation in broiler chickens infected with Salmonella Enteritidis. Avian Pathol 41:421-427 doi:https://doi.org/10.1080/03079457.2012.709315
Rahn K et al. (1992) Amplification of an invA gene sequence of Salmonella typhimurium by polymerase chain reaction as a specific method of detection of Salmonella. Mol Cell Probes 6:271-279 doi:https://doi.org/10.1016/0890-8508(92)90002-F
Römling U, Bian Z, Hammar M, Sierralta WD, Normark S (1998) Curli fibers are highly conserved between Salmonella typhimurium and Escherichia coli with respect to operon structure and regulation. J Bacteriol 180:722-731
Salehi S, Howe K, Lawrence ML, Brooks JP, Bailey RH, Karsi A (2017) Salmonella enterica serovar Kentucky flagella are required for broiler skin adhesion and caco-2 cell invasion. Appl Environ Microbiol 83:e02115-02116 doi:https://doi.org/10.1128/AEM.02115-16
Shah DH, Casavant C, Hawley Q, Addwebi T, Call DR, Guard J (2012) Salmonella Enteritidis Strains from Poultry Exhibit Differential Responses to Acid Stress, Oxidative Stress, and Survival in the Egg Albumen. Foodborne Pathogens and Disease 9:258-264 doi:https://doi.org/10.1089/fpd.2011.1009
Sterzenbach T et al. (2013) A novel CsrA titration mechanism regulates fimbrial gene expression in Salmonella typhimurium. The EMBO Journal 32:2872 doi:https://doi.org/10.1038/emboj.2013.206
Tanabe Y, Wada T, Ono K, Abo T, Kutsukake K (2011) The transcript from the σ28-dependent promoter is translationally inert in the expression of the σ28-encoding gene flia in the fliaz operon of Salmonella enterica serovar Typhimurium. J Bacteriol 193:6132 doi:https://doi.org/10.1128/JB.05909-11
Vonaesch P, Sellin ME, Cardini S, Singh V, Barthel M, Hardt WD (2014) The Salmonella Typhimurium effector protein SopE transiently localizes to the early SCV and contributes to intracellular replication. Cell Microbiology 16:1723-1735 doi:https://doi.org/10.1111/cmi.12333
Wagner C, Hensel M (2011) Adhesive mechanisms of Salmonella enterica. In: Linke D, Goldman A (eds) Bacterial Adhesion, vol 715. Springer, Dordrecht, Advances in Experimental Medicine and Biology, pp 17-34. doi:https://doi.org/10.1007/978-94-007-0940-9_2
Wright AP, Richardson L, Mahon BE, Rothenberg R, Cole DJ (2015) The rise and decline in Salmonella enterica serovar Enteritidis outbreaks attributed to egg-containing foods in the United States, 1973–2009. Epidemiol Infect 144:810-819 doi:https://doi.org/10.1017/S0950268815001867
Zhang J et al. (2013) Transcriptome analysis of Cymbidium sinense and its application to the identification of genes associated with floral development. BMC Genomics 14:279 doi:https://doi.org/10.1186/1471-2164-14-279
Zhu C, Meng X, Duan X, Tao Z, Gong J, Hou H, Zhu G (2013) SEF14 fimbriae from Salmonella enteritidis play a role in pathogenitic to cell model in vitro and host in vivo. Microb Pathog 64:18-22 doi:https://doi.org/10.1016/j.micpath.2013.07.002