Bacterial strain
The bacterium Erwinia toletana LB1-10 (GenBank Accession Number KT720377) was selected to carry out this study from a set of bacteria isolated from the skin of adults of Pelophylax perezi inhabiting a reference site, with no previous exposure to increased salinity (Costa et al., 2016).
Erwinia toletana, stored at -80ºC in NB-medium (Thermo Scientific, CM0003) with 15% glycerol, was recovered in sterilized solid LA medium and cultures were renewed three times to ensure no contamination and cells viability. A pre-inoculum of E. toletana was obtained by inoculating a colony in 5 mL of LB medium and incubating overnight at 28ºC and 180 rpm. The inoculum to determine the growth curve was made with 500µL of the pre-inoculum in 50 mL of LB medium, incubated at the same conditions. Optical density, measured at 595 nm, was followed constantly for one week.
Long-term exposure and sensitivity assays
To determine if long-term exposure of E. toletana to two salinity scenarios could cause an increase on its tolerance to NaCl, clonal populations of E. toletana were exposed, for 46 days, to the following salinity scenarios: (i) long-term continuous exposure to the effective concentration of NaCl causing 10% of growth inhibition EC10 (Et-NaCl) and (ii) long-term exposure (for 30 days) to the effective concentration of NaCl causing 10% of growth inhibition EC10 followed by the transfer of the clonal population to LB medium for the remaining 16 days (Et-R), to simulate a scenario where the aquatic system may recover after a long period of salinization (e.g. due to intense rainfall). Adding to these two scenarios, E. toletana was also exposed for a long-term (46 days) to LB medium (Et-LB), consisting in the control. The EC10 of 18 g/L of NaCl was computed from a previous work (unpublished) where bacterial sensitivity to NaCl was tested through microdilution method. Five clonal populations of E. toletana were exposed per each of the three scenarios, i.e. Et-NaCl, Et-R and Et-LB. Exposure was carried out in 24-wells plates, with 2 mL of culture media (either LB or LB with 18g/L of NaCl) in each well and inoculated with 20 µL of a 0.1 O.D.595nm pre-inoculum (please see Table 1).
To assess the reversibility of the NaCl-tolerance phenotype, after exposure to NaCl for 30 d period, 20 µl of each population were used to inoculate LB medium and cultured for 16 days (Et-R1 to Et-R5).
After the long-term exposure period (46 days), the sensitivity of the 15 clonal populations (5 clonal populations x 3 exposure scenarios) was determined by exposing them to six concentrations of NaCl (5 g/L; 10 g/L; 15 g/L; 20 g/L; 25 g/L; 35 g/L) plus a control (LB medium), in triplicate. Exposure occurred for 120 hours at 120 rpm, at 28±1ºC and a photoperiod of 16:8 hours light. At the end of the assay the O.D. was measured at 595 nm in a UV-vis Spectrophotometer (UVmini-1240, UV-vis Spectrophotometer, Shimadzu). The pH, conductivity and salinity were measured in all tested solutions with multiparameter equipment (WTW Multi 3410 SET C 2FD45C).
The populations of E. toletana, after exposure to the three treatments, were stored at -80ºC in NB-medium with 15% glycerol.
Bacterial metabolic analysis: biolog “fingerprint” analysis
The influence of long-term exposure to increased salinity on the metabolic degradation of carbon compounds (through Biolog Plates) of the E. toletana clonal populations (Et-LB, Et-NaCl and Et-R) was also assessed. For this, the Biolog method analysis was carried out, following the instructions of GEN III MicroPlateTM protocol test although the incubation time was extended for 48 h at 28±1ºC, following the bacterium optimal conditions of growth. The turbidity of the inoculum of each population was set at the same value (65%) at the beginning of the incubation. Five replicates of each population were conducted. The optical densities, as surrogates of metabolic activity, were measured after time 0h, 16h, 24h and 48h.
Biolog (Biolog Inc., Hayward, CA, USA) is commonly used to differentiate microbial communities and to identify bacterial isolates, based on 94 phenotypic tests (Stefanowicz, 2006; Guckert et al., 1996). Here it was used to compare the capacity of E. toletana populations to metabolize diverse carbon sources following its previously exposure to different salinity conditions. Each Biolog plate (96-well plate) is constituted by two groups of substances, one is constituted by 71 carbon substrates plus a negative control without any carbon source, remaining colorless. From the 71 carbon substrates 4 main groups are distinguish: sugars, amino acids, hexose acids and carboxylic acids, esters and fatty acids. The other is composed of 23 chemical substances (e.g. hydrogen ions, NaCl, lactic acid) that may potentially inhibit the growth of bacteria plus a positive control, which correspond to a reference source for chemical sensitivity causing no inhibition in growth.
Fingerprinting for molecular typing: BOX-PCR
To search for genomic alterations, a molecular typing BOX-PCR strategy was applied. Cells from each clonal population of E. toletana (Et-LB, Et-NaCl, Et-R) were suspended in 20µL of sterilized water and used as template in the PCR reactions. PCR reactions (25 µL) contained 6.25µL of NZYtaq 2X green Master Mix (2.5mM MgCl2; 200μM dNTPs; 0.2 U/μL DNA polymerase) (NZYTech, Portugal), 1 µL of 10µM of primer BOX A1R (5'-CTA CGG CAA GGC GAC GCT GAC G-3'), 1µL of the cell suspension and nuclease-free water. The program set in a BioRad C1000 TouchTM Thermal Cycler was 95ºC-7’; 30 cycles at 94ºC-1’, 53ºC-1’, 65ºC-8’ and 65ºC-16’. PCR products were loaded in agar gels and separated by electrophoresis in 1x TAE at 80V for 3 hours.
Statistical analysis
The results obtained in the sensitivity assay were adjusted to a logistic model to calculate the concentrations of NaCl causing 10, 20 and 50% of growth inhibition of E. toletana (EC10, EC20 and EC50) and the respective 95% confidence limits. These calculations were made via StatSoft, Inc. (2007) STATISTICA. To identify significant effects of NaCl exposure on the E. toletana populations sensitivity, a two-way variance analysis (ANOVA) was performed followed by the multicomparison Dunnett’s test.
The data obtained in the metabolic assay was analyzed with a repeated-measure ANOVA to assess differences in the consumption of the different carbon substrate over time, within the same clonal population (Et-LB, Et-NaCl or Et-R). To identify differences between the controls and the carbon substrates or the inhibitory chemical substances a one-way ANOVA was carried out for each clonal population followed by the Dunnett’s multicomparison test.
The ANOVA assumptions were tested with Kolmogorov-Smirnov test for normality and Barttlet’s test for variances homogeneity. These analyses were made by using the SigmaPlot Inc. (2012) Systat Software.