2.1. Preparation of BS-Z15 SMs
B. Subtilis strain Z15 secondary metabolites were derived as described by Zhao et al[23]. Briefly, a single colony of B. Subtilis strain Z15 was picked and inoculated in beef paste peptone liquid medium. After incubating at 37℃ and 180 rpm for 18h, the broth was centrifuged at 12000 rpm for 20 min, and the clarified supernatant was aspirated. The proteins in the supernatant were precipitated with HCl (pH adjusted to 2) at 4°C, and centrifuged at 12000 rpm for 20 min. The precipitate was resuspended in sterile water, and chilled acetone was added for further extraction. We mixed the solution shaking vigorously and allowed it to stand at 4°C.Once the layers were delaminated, the upper organic phase was aspirated, and the residual acetone was removed with a rotary evaporator. This acetone extract of B. Subtilis-Z15 secondary metabolites (referred to as BS-Z15 SMs) was fractionated and stored at -20°C, and filtered through a 0.22µm sterile filter prior to the experiments.
2.2. Cell Culture
The H22 and BEL-7404 cell lines were provided by the Xinjiang Key Laboratory of Special Species Conservation and Regulatory Biology, Xinjiang Normal University (Urumqi, Xinjiang, China). The cells were cultured in RPMI-1640 medium containing 1% penicillin-streptomycin solution and 10% FBS at 37°C under 5% CO2.
2.3. Experimental animals
Thirty-two male Kunming mice (6–8 weeks old) were purchased from Animal Experiment Center, Xinjiang Medical University (Urumqi, Xinjiang, China).The experimental mice were fed in a standard animal housing at Xinjiang Normal University, which is strictly controlled by temperature and light and free of specific pathogens. All animal experiments were followed the guidelines of the Animal Experimentation Center of Xinjiang Medical University.
2.4. Tumor induction
A subcutaneous graft tumor model of HCC was established using H22 cells. Briefly, 1×106 H22 cells suspended in 100 µL PBS were subcutaneously injected into the right axilla of Kunming mice. 6 days later, the mice were randomly distributed into 4 groups of 8 mice each. The control group was injected intraperitoneally with 200 µL sterile saline each day, while the positive control group received 2 mg/kg cisplatin once every two days. The experimental groups received 30 mg/kg or 100 mg/kg BS-Z15 SMs intraperitoneally every day.The tumor dimensions were measured with a Vernier caliper every two days, and the mice were weighed. The tumor volume (mm3) was calculated as (length×width2)/2. The mice were euthanized after 15 days of treatment, and the tumors and main organs were harvested. Then weighed these tissue samples and placed in 4% formaldehyde for fixation.
2.5. H&E staining
The fixed tissues were dehydrated through an ethanol gradient, immersed in paraffin for embedding, and the paraffin blocks were cut into 5µm-thick sections when the paraffin was completely solidified, which were then stained with hematoxylin for 10 min and split with 1% hydrochloric acid ethanol for 10 s. The stained sections were viewed under a microscope and analyzed using an image analysis software.
2.6. MTT assay
H22 and BEL-7404 cells at the logarithmic growth stage were resuspended in culture medium and inoculated in 96-well culture plates at a density of 5000 cells/well and incubated overnight to adhere to the wall. The H22 cells were treated with 0, 10, 20, 40 and 80 µg/mL BS-Z15 SMs for 24 h, and BEL-7404 cells were treated with 0, 15, 25, 35 and 45 µg/mL of the drug for 24, 48 or 72h. At the same time, the positive control group was treated with 20 µg/ml cisplatin. At the respective time-points, 0.1 mg/mL MTT was added to the respective well, and the cells were incubated for another 4h. After dissolving the formazan crystals with 100 µL DMSO per well, the optical density(OD) values of each well were measured at 490 nm using a microplate reader (Benchmark Plus, Bio-Rad, USA). The viability (%) was calculated as (OD treated/OD control) ×100%. The experiment was repeated thrice.
2.7. Hoechst 33258 staining
BEL-7404 cells were grown in 6-well culture plates at a density of 1×105 cells/well and cultured overnight. After attachment, cells were treated with BS-Z15 SMs (0, 15, 25, and 35 µg/mL) for 24 h, the medium was removed, and then washed cells twice with PBS. Finally, fixed cells for 10 minutes at 4℃ with chilled 4% paraformaldehyde, then washed twice with PBS. The cells were stained with 500 µL Hoechst 33258 staining solution for 10 min in the dark, and observed with an inverted fluorescence microscope (Eclipse E20, Nikon, Japan).
2.8. Cell cycle analysis
BEL-7404 cells were planted in 60 mm sterile culture dishes and cultured for 24 hours. The adherent cells were treated with BS-Z15 SMs (0, 15, 25 and 35 µg/mL), or 20 µg/mL cisplatin, for 24 h. The suitably treated cells were washed twice with cold PBS, fixed overnight in ice-cold 70% ethanol at 4℃, and then added the 400 µL propidium iodide (PI) and 100 µL RNase A staining solution and warm incubation for 30 min at 37℃ protected from light.The cell cycle distribution was analyzed by flow cytometry (FACS Calibur, BD Biosciences, USA). The experiment was repeated thrice.
2.9. Apoptosis assay
Apoptosis was detected using the Annexin V-FITC/PI Apoptosis Detection Kit as directed by the manufacturer. We seeded 4×105 BEL-7404 cells in each 60 mm cell culture dish and cultured for 24 h.Following treatment with 0 to 35 µg/mL BS-Z15 SMs or 20 µg/mL cisplatin for 24 h, the adherent cells were harvested and washed twice with cold PBS. After resuspending the cells with 500 µL binding buffer, they were stained with 5 µL Annexin V-FITC and 5 µL PI for 15 min in a dark environment. The apoptotic cells were detected by flow cytometry (FACS Calibur, BD Biosciences, USA).
2.10. Detection of mitochondrial membrane potential
BEL-7404 cells were seeded into a 6-well plate at the density of 2×105 cells/well and cultured for 24 h. After treating with BS-Z15 SMs (0, 15, 25 and 35 µg/mL) for 24 h, the cells were resuspended in 500 µL culture medium and 500 µL JC-1 staining solution. The cells were incubated for 20–30 min at 37°C, and observed under a fluorescence microscope (Eclipse E20, Nikon, Japan) at the emission wavelength of 540 nm.
2.11. Western blotting
The suitably treated BEL-7404 were harvested and lysed with RIPA buffer on ice for 30 min, then centrifuged, and the supernatant was aspirated. The amount of total protein in the cells was measured using a BCA protein assay kit. Equal amounts of proteins from per sample were separated electrophoretically on a 12% SDS-PA gel and then transferred to a polyvinylidene difluoride (PVDF) membrane. After the transfer was completed, the PVDF membranes were placed in 5% skim milk and blocked by slow shaking on a shaker at room temperature for 2 h. Then the blots were incubated overnight with primary antibodies at 4°C, washed several times with TBST buffer, and probed with the horseradish peroxidase (HRP)-conjugated secondary antibody at room temperature for 1.5 h. The protein bands were detected using the ECL assay kit and Image J software was used to analyze their optical density, with β-actin as the internal control. The experiment was repeated thrice.
2.12. Statistical analysis
All experimental data are expressed as the mean ± standard deviation (SD) of three independent replicate experiments. One-way ANOVA was used for data analysis. GraphPad Prism 9.0 was used for statistical analysis. It was considered statistically significant when P < 0.05.