Chemicals
Analytical grade chemicals were used in this study. Brain heart infusion broth (BHI), Agar, peptone, sucrose, exogenous dextrose, glucose, maleic acid, NaCl and ethanol were obtained from HiMedia Pvt. Ltd. (Mumbai, India). Electrophoresis reagents were purchased from Sigma Chemical Co. (St. Louis, MO, USA). Glutaraldehyde, paraformaldehyde, Sephadex G-200, propidium iodide and all other chemicals used were obtained from E. Merck Pvt. Ltd. (Mumbai, India) or Sisco Research Lab Pvt. Ltd. (Mumbai, India).
Bacterial strain and growth conditions
Streptococcus mutans strain MTCC-890 was obtained from MTCC Institute of Microbial Technology (IMTECH), Chandigarh, India. S. mutans was grown in brain heart infusion (BHI) broth, supplemented with 1% peptone, 1% dextrose, 0.29% glucose, 0.25% sodium hydrogen phosphate and 0.05% NaCl (pH 7.4) to late-exponential phase at 37 °C.
Purification of dextransucrase from S. mutans and production of antibodies.
Dextransucrase was purified to homogeneity from the culture supernatant of S. mutans MTCC-890 grown at 37 °C for 36 h by 55% ammonium sulphate precipitation followed by gel filtration chromatography using Sephadex G-200 and treatment with PEG-400 (polyethylene glycol 400) as reported earlier16.
Polyclonal antisera against dextransucrase purified from S. mutans was raised in New Zealand White rabbits immunised subcutaneously with purified dextransucrase (500μg) mixed with complete Freund’s Complete Adjuvant (F5881, Sigma, USA). Serum was collected after two weeks of last booster and analysed for dextransucrase specific antibody by Dot blot assay, confocal microscopy, ELISA and western blot analysis as described previously16. Serum IgG was purified by affinity chromatography using Protein A Sepharose Column (Bio Vision, USA).
Cell fractionation of S. mutans
Cell fractionation was carried out by separating the cells from culture media by centrifugation. The cell pellet was treated with lysozyme 0.25mg/ml in 50mM sodium maleate buffer pH 6.8 for half an hour in ice and then kept in a water bath at 37°C for 5 min. The cells were lysed by sonication using cell sonicator (Sonics- Vibra VCX-750 USA) for 10 min and the pulse rate was 10 sec on and 10 sec off. After cell disruption the sample preparation was subjected to differential centrifugation using ultracentrifuge Beckman coulter (Optima XPN-100). The sample preparation was centrifuged at 2000g to separate unbroken cells followed by 8000g for 10 min, 40000g for 30 min and 150000g for one hour to collect different fractions of S. mutans cells. All the procedures were carried out at 4°C. The pellets obtained at each step were suspended in 20mM sodium maleate buffer pH 6.8 and stored at -20°C and analysed for dextransucrase activity and affinity for dextransucrase antibody.
Immunoelectron Microscopy
Immunoelectron microscopy was carried out for detecting intracellular and surface location of dextransucrase utilizing antigen- antibody reactions17. The cells were fixed in 0.2% glutaraldehyde and 4% paraformaldehyde in PBS for 2-hours at room temperature. The fixed cells were dehydrated in ascending grade of ethanol (20%, 50%, 70%, 90%, and 100%) and embedded in LR white resin (Hard grade) (TAAB, UK) at 55°C. Thin sections of 80-90 nm thickness were cut using ultra microtome and mounted onto 300 mesh nickel grids. The grids were first incubated in 1% cold-water fish gelatin made in 0.01M phosphate buffer saline (PBS) for 30 minutes to block nonspecific sites followed by incubation in primary antibody (Dextransuccrase antibody) diluted in the ratio of 1:200 overnight at 4°C. The grids were washed three times one minute each in diluent buffer and incubated in secondary antibody (goat anti-rabbit) conjugated with 10 nm colloidal gold (dilution: 1: 50; TAAB, UK) for 2 hours at room temperature followed by washing three times with buffer and water one minute each. The grids were stained for five minutes with uranyl acetate followed by brief washing with distilled water. The grids were blotted dry and observed at a magnification 29000X at 200kV under transmission electron microscope Tecnai G20 (FEI Company, The Netherlands).
Scanning Electron microscopy (SEM)
Scanning electron microscopy was performed following the method described by Ansari et al.18. Cultures of S.mutans with OD 0.01were grown on glass coverslips immersed at the bottom of the 6-well culture plates to allow the formation of biofilms. Purified IgG was added to the wells and wells without addition of IgG served as the control. After 36 hours of incubation at 37 oC the glass coverslips were carefully removed from the wells and washed three to four times with PBS. The cells were fixed by 4% formaldehyde and 2% glutaraldehyde in PBS pH 7.4 for 2 hours followed by 3-4 times PBS washings. After fixation the glass coverslips were dehydrated by suspending in different percentages of ethanol (10-100%) for 15min each and dried using critical point dryer CPD (EMS 850 JEOL Japan). Sample specimens were sputter coated with platinum in argon gas using sputter coater (JEC-3000FC JEOL Japan) and observed under SEM (JSM-IT300 JEOL Japan). The images of treated cells and control were compared.
Fluorescence microscopy
Cultures of S.mutans were grown on glass cover slips in 6-well culture plates with OD 0.01 to allow the formation of biofilms on the glass coverslips. Purified IgG fraction of dextransucrase antibody was added to the wells in triplicates labelled as treated and wells without addition of IgG served as control. After 24 hours of incubation at 37°C the glass coverslips were carefully removed from the wells and washed three to four times with PBS. The cells were fixed in fixation buffer containing 4% formaldehyde and 2% glutaraldehyde in PBS pH 7.4 for 2 hours followed by 3-4 times washings with PBS. The samples were stained with propidium iodide (1µg/ml) for one hour followed by washing with PBS and analysed under fluorescence microscope (EVOS M7000 Imaging System Thermos Fisher Scientific) as described by Wen et al.19.
Cell adherence
The effect of the dextransucrase antibodies on the adhesion of S. mutans to smooth glass surface was studied by the method of Hamada and Torii20. The organism was grown in a glass tube at an angle of 30° containing 10 ml of BHI medium with 5% (w/v) sucrose at 37°C for 24 h. The appropriate controls of BHI were run simultaneously. The cell adherence was quantified spectrophotometrically by measuring O.D. at 600 nm using untreated culture as the control. All the determinations were done in triplicates.
Percentage adherence = (O.D. of adhered cells/O.D. of total cells) × 100.
Cell Surface hydrophobicity.
Cell surface hydrophobicity was determined by following the modified method of Martin et al.21. S. mutans MTCC 890 were inoculated to fresh BHI media and incubated for 12 hours in presence and absence of antibody (IgG). The bacterial cells were pelleted out and washed twice with sterile saline (0.85%) and optical density of the suspended cells in normal saline was adjusted to 0.3 at 600 nm. Thereafter 0.50 mL of toluene was added to 3.0 mL of the bacterial cell suspension in glass tubes which were agitated uniformly on a vortex mixer for 2 minutes and allowed to equilibrate for 10 minutes at room temperature. The absorbance at 600 nm of the aqueous phase separated from hydrocarbon phase was estimated using spectrophotometer. The hydrophobicity index, expressed as a percentage, was calculated as: [(OD initial - OD final) / OD initial] × 100.
Acid production
The method of Ciardi et al.22 was used to determine acid production by S. mutans. 5% (w/v) of sucrose in 5 ml of BHI broth containing serum antibody was added with 100 µl of 18 h cultures of S. mutans. The pH of the bacterial medium was assessed at 0 h and after 24 h of incubation. Except otherwise stated all determinations were done in triplicates and suitable controls were run simultaneously.
RNA extraction and cDNA Synthesis
Total RNA was extracted from the bacterial cells using TRizol (Sigma Aldrich USA) reagent according to manufacturer‘s instructions. RNA quantification and purity was determined by the Nano Drop ND-1000 spectrophotometer. RNA extraction was immediately proceeded for cDNA synthesis after quantitative assessment.
cDNA was synthesized from 1µg of RNA isolated from S. mutans cells using random hexamer primers and Revert Aid First Strand cDNA synthesis Kit (Thermo Scientific) as per the user instructions in total reaction mixture of 20µl. The reaction mixture was incubated at 65°C for 5 minutes and then mixed with 5X reaction mix 4µl, RiboLock RNase inhibitor (20 Units/µl) 1µl 10mM dNTP mix 2µl, RevertAid M-MuLV RT (200 U/µl) 1µl. The reaction was incubated at 42°C for 60 minutes followed by 70°C for 10 minutes. The reaction was terminated and cDNA was stored at -20°C till used for qRT-PCR analysis.
qRT-PCR
Real time Polymerase Chain Reaction (RT-PCR) (relative quantification) was done using StepOne Plus Real-Time PCR system (Applied Biosystems, Life Technologies) by SYBER Green method. The relative expression of GtfB, GtfC, relA, brpA, smu630 and vicK was carried out using specific primers as given in the Table 1. 16sRNA was used as invariant internal control. The data of quantitative analysis was determined by 2–∆∆CT method where ΔCT = CT (Target gene) - CT (Reference gene). ΔΔCT = ΔCT (Target sample) - ΔCT (Reference sample). CT value (cycle threshold) is inversely proportional to gene expression and is represented as the number of amplification cycles required for the fluorescent signal to cross the threshold. PCR conditions for the amplification of 16sRNA and BrpA were 94°C for 5-minutes (Initial denaturation) followed by 40 cycles of 94°C 40 sec, 60°C 40 sec and 72°C 45 sec. GtfC, vicK and Smu630 were 94°C 5-minutes (Initial denaturation) 40 cycles of 94°C 40 sec 61°C 40 sec 72°C 45 sec and for GtfB, relA were 94°C 5minutes (Initial denaturation) 40 cycles of 94°C 40 sec, 62°C 40 sec and 72°C 45 sec.
Table 1.Shows the sequence of primers used to amplify various genes.
Gene and primer sequence
|
Amplicon size (bp)
|
16sRNA
Forward GGTGCGCTACACCAATGA (Sense)
Reverse CGCCTACTGGAACCCAAAC (AntiSense)
|
117
|
GtfB
Forward GGTGCGCT ACACCAA TGA (Sense)
Reverse CGCCT ACTGGAACCCAAAC (AntiSense)
|
110
|
GtfC
Forward GGTGCGCT ACACCAA TGA (Sense)
Reverse CGCCT ACTGGAACCCAAAC (AntiSense)
|
110
|
relA
Forward CAAGAGCAGGGCT A TGTGG (Sense)
Reverse ACCGACAGCCGCA T AAAG (AntiSense)
|
108
|
Smu630
Forward GCAGTGCTAAGACTCCCGAA (Sense)
Reverse GCGGAAGTGTGAGATTGGCA (AntiSense)
|
147
|
BrpA
Forward CTGCTGGAGGTGCT AAGA TG (Sense)
Reverse CCAACTGAACCAGCCCTT (AntiSense)
|
102
|
vicK
Forward CTCATTACGCTTGCGCTTTG (Sense)
Reverse CGGCGTTCACGTTCTTCT (AntiSense)
|
111
|
Immunohistochemistry
Immunohistochemical analysis was carried out following method of Malhotra et al.23 to check the cross reactivity of dextransuccrase antibody with the mammalian tissues. Reference slides were prepared from the tissue samples of the rabbit and pre-prepared slides of human tissues were obtained from Department of Histopathology, PGIMER Chandigarh (India).