Ethics
This study was approved by the Medical Ethics Committee of Tarbiat Modares University (IR.TMU.REC.1395.339).
Cloning, expression, and purification of rTcpA
Bacterial strains
Vibrio cholerae (ATCC 14035) and Escherichiacoli Bl-21 (DE3) were obtained from the archive of ourlaboratory in Department of Bacteriology,TarbiatModares University, Tehran, Iran, and after their cultivation on Sheep blood agar were used for amplification and production of rTcpA.
Amplification of tcpA using PCR technique
Genomic DNA was extracted from V. cholerae (ATCC 14035) and used for tcpA gene amplification by forward and reverse primers specifically chosen according to whole-genome sequence of V. cholerae N16961 (Genebank accession number CP028827) Forward: 5'-GCTGGATCCATGACATTACTCGAAGTGATCATC-3' and Reverse: 5'-GCTCTCGAGGCTGTTACCAAATGCAACGCCGAA-3'. PCR conditions were as follows: initial denaturation at 95˚C for 5 min, secondary denaturation at 95˚C for 30sec, annealing at 53˚C for 30sec, extension at 72˚C for 1min and a final extension at 72C º for 2 min. The amplification was performed for 35 cycles.
Purification of PCR products and cloning
PCR product from tcpA amplification was purified using the Spin Combo kit (Biotech, Chinese) from agarose gel and digested with BamHI and XhoI (Thermo Fisher Scientific, USA). The expression vector, pET-28a, was phosphorylated by rSAP (Thermo Fisher Scientific, USA) and ligated with the purified tcpA gene using T4 DNA ligase (Thermo Fisher Scientific, USA). The tcpA-pET-28a construct was transformed into E.coli Bl-21 and colony PCR and plasmid extraction was performed to confirm the ligation. The ligated vector was sequenced (BIONEER company, South Korea) to confirm the identity of cloned gene.
Expression and purification ofrTcpA
E.coli Bl-21 was transformed with pET-28a for the production of rTcpA. Bacteria were grown in the LB broth (Thermo Fisher Scientific, USA) containing 50µg/mL kanamycin for overnight at 37 ºC and then diluted into new LB broth and incubated again at 37 ºC with shaking at 230 rpm until the achievement to OD=0.6 at λ=600 nm.Bacterial culture was treated with 0.01 mM IPTG for induction of tcpA expression and further grown at 30 ºC with shaking at 230 rpm (the concentration of IPTG, incubation temperature and shaking speed were set up in separate assays).
Subsequently, bacterial cells were lysed by sonication and supernatant was collected for analysis by SDS-PAGE [28]. The rTcpA protein waspurifiedusing Ni-column chromatography according to worksheet protocol (CMSephadex C-25GE; Healthcare Life Science). The concentration of purified protein was determined using BCA protein assay kit (Thermo Fisher Scientific, USA).
Confirmation of rTcpA identity by western immunoblotting
The identity of the purified rTcpA was analyzed by western blotting (WB) assay. Briefly, the SDS-PAGE gel was electroblotted onto polyvinylidene difluoride (PVDF) membrane and the blotted PVDF was blocked with 1% skim milk for overnight at 4 ºC. After washing, membranes were soaked in 1:1000 diluted anti-polyhistidineantibody (Abcam, Cambridge, USA) at 4 ºC for 24 h. After incubation with HRP conjugated rabbit anti-IgG (Abcam, USA) at room temperature (RT), WB-enhanced chemiluminescence (ECL) substrate was added to the membrane for chemiluminescence detection. The membrane was then lifted and the photoluminescence recorded by ECL camera.
Evaluation of rTcpA cytotoxicity on Caco-2 cell line
Human colon carcinoma cell line (Caco-2 cells) were purchased from Pasteur Institute of Iran and cultured in Dulbecco's Modified Eagle Media (DMEM) F12(Gibco, Thermo scientific, USA) containingL-glutamine and high glucose, supplemented by 10% fetal bovine serum (Gibco, Thermo scientific, USA) and 1% penicillin-streptomycin. The cell culture flasks were incubated at 37 ºC with 5% CO2 in a moist atmosphere [29] . The Caco-2 cells start to polarize when confluence and macromolecules are sorted and maintained between apical and basolateral surfaces of confluent cells. Moreover, markers of colonocytes are also present in Caco-2 cells [30].
The Caco-2 cells were trypsinated when reached 90% confluency and seeded in 96-well plates (SPL life science, South Korea) at a density of 2×104 cells per well and incubated at 37 ºC with 5% CO2. The confluent monolayer was treated with different concentrations of rTcpA (0.1, 1 and 10 µg/mL) for 24, 48 and 72 h. Subsequently, 50 µL of the medium was removed and replaced with MTT (Methyl Thiazolyl diphenyl-tetrazolium bromide) reagent. After 4 h incubation, 100 µLDMSO was added, mixed well and the absorbance was read at 570 nm and the cell viability was measured by the following formula:
Cell viability (%)= OD of sample/OD of control × 100 [31].
Caco-2/ Peripheral Blood Mononuclear Cells (PBMCs) co-culture
PBMCs were separated from whole blood of healthy volunteers by Ficoll-Hypaque centrifugation method (400g, 20 min) [32, 33] . The collected PBMCs were washed 2 times with PBS and purified PBMCs were seeded in DMEM supplemented by 10% inactive fetal bovine serum and 1% penicillin-streptomycin at 37 ºC with 5% CO2 (28). The Caco-2 cells were transferred at a density of 2.5×105 cell/mL into a T25 tissue culture flask and 5 mL of complete medium containing DMEM F12, FBS 10%, and penicillin-streptomycin was added with density of 2×106 cell/mL of freshly isolated PBMCs [34].
Determination of TLRs, NODs, and mucin related genes expression in Caco-2/PBMCs co-culture treated with rTcpA by real-time PCR
RNA extraction and cDNA synthesis
The Caco-2/PBMCs co-culture was treated by different concentrations of naked rTcpA (1, 5, 10 and 50 µg/mL). The Caco-2/PBMCs co-cultures without treatment were used as control. The treatment was performed on co-culture model for 24h at 37 ºC in CO2 atmosphere and Caco-2 cells were collected and lysed by trizol reagent (Sigma Aldrich, Germany) for RNA extraction. Accordingly, chloroform was added to the cell lysate and centrifuged(15min,1200g and 4 ºC), afterward the aqueous phase was mixed with 2-propanol and centrifuged. The isolated total RNA was washed twice with ethanol 70% and after drying was solubilized in diethyl pyrocarbonate (DEPC) treated water. The purity of RNA was determined by absorbance at OD260/280 and only samples with a ratio of 1.8±2.0 were subjected for cDNA synthesis by cDNA Synthesis Kit (YektaTajhizAzma, IRAN). According to manufacturer protocol, 100 ng template RNA, 50 µM Random hexamer, 50 µM Oligo dT and DEPC treated water were mixed and incubated for 5 min at 70ºC, after which M-MLV (Moloney Murine Leukemia Virusreverse transcriptase) (10,000 U), dNTP 10mM, RNasin (40u/µl), 5X first-strand buffer were added and the mixture was incubated for 60 min at 37 ºC. The reaction was terminated by heating at 37 ºC for 5 min.
Real-time PCR analysis
Real-time PCR was performed to determine the probable role of rTcpA in the modulation of the TLRs, NODs, and mucin related genes expression (muc1,3and4) using the Applied Biosystems 7500 (Thermo Fisher Scientific, USA). The qPCR was performed according to the following conditions: Pre-incubation at 95˚C for 5 min, 45 cycles consisting of denaturation at 95˚C for 30 sec, annealing at 60˚C for 30 sec, extension at 72˚C for 30 sec. The melting pick analysis was performed in 95 ˚C for 5 min. Each PCR reaction contained 10μL 5x Real-time PCR Master Mix (Takara, Japan), 2 μL cDNA template, 0.8μL of each primer and 6.4μL distilled water in a total reaction volume of 20 μL. The nucleotide sequence of the forward and reverse primers used for amplification of muc (muc1, 3and 4), tlr (tlr1, 4) and nod genes (nod1, nod2) are depicted in Table 2. In each reaction, the same amounts of RNA were converted into cDNA and pipetting error was removed. The expression of GAPDH gene was considered as the internal control for each sample and the ΔCT(CT target−CT reference) of each sample and expression fold change were calculated. Each real-time PCR reaction was carried out in triplicate and results were presented as Mean±SD.
Statistical Analysis
The Kruskal-Wallis test was used to perform statistical analysis (using SPSS software,ver. 16) to compare the gene expression between treated Caco-2/PBMC co-culture cells groups with untreated cells and a p-value <0.05 was considered as significant. The correlation coefficient between therTcpA concentration and the different genes expression level was determined by Spearman test.