Standard lipids were obtained from Avanti Polar Lipids, Inc. (AL, USA), and the purity of each was more than 99.0%; cholesterol, 4β-hydroxycholesterol-4-acetate, 4β-hydroxycholesterol, 7-ketocholesterol (7-KCh), 4-cholestenone (4-Chn), 4,6-cholestadien-3-one, O-palmitoleoylcarnitine (C16:1_CA), palmitoyl-L-carnitine (C16:0_CA), linoleoyl-L-carnitine (C18:2_CA), oleoyl-L-carnitine (C18:1_CA), stearoyl-L-carnitine (C18:0_CA), and 3-hydroxyoleoyl-carnitine (3OH-C18:1_CA). Three deuterated compounds were purchased and used as internal standards, including oleoyl-L-carnitine-d9 (IS1), cholesterol-d6 (IS2), and 7-KCh-d7 (IS3).
Instruments and conditions
Thermo Scientific LTQ-XL linear ion trap mass spectrometer coupled with Accela autosampler and Accela pump (San Jose, CA, USA). The ion source; is the electrospray ionization (ESI) compartment. The system was controlled with Xcalibur® Thermo Fisher Scientific Inc, version 2.07 SP1. Spray voltage, 5.0 kv, sheath gas flow rate, 42 mL/min, auxiliary gas, 10 mL/min, capillary voltage, 60v, capillary temperature, 325 °C. The collision energy was 35 v. Column, Eclipse Plus C18, 3.5 μm, 4.6 x 100 mm (Agilent, Palo Alto, USA), column oven, 40±3 °C. Tray temperature, 20 °C. The mobile system was composed of (A) water: methanol: ammonium hydroxide solution 25% (75: 25: 0.4, v/v), (B) methanol: chloroform: ammonium hydroxide solution 25% (95: 5: 0.4, v/v) and (C) methanol: chloroform: ammonium hydroxide solution 25% (75: 25: 0.4, v/v). The flow rate was 400 μL/min. The pump was programmed at 0 – 2 min to deliver 65%A, decreased to 35%A at 9 min, decreased to 15%A at 30 min, decreases to 5%A at 40, and decreased to 1%A at 49 – 70 min.
The ion trap-mass spectrometer (IT-MS) detector was programmed to monitor ions by applying positive scan mode, 100 - 1200 m/z, and dependent auto-fragmentation mode. MSn spectra generation for ions exceeds the mass count of 1000. Data were saved as raw files for further investigation by Processing Setup, Thermo Xcalibur 4.5.474.0, 1/14/2022., and FreeStyle™ 1.8 SP2, Modern Data Visualization Software, Version 1.8.63.0, Build Date: Friday, July 30, 2021, Copyright © 2021 Thermo Fisher Scientific Inc. The NIST Mass Spectral Search Program, Version 2.4, build Mar 25, 2020. The NIST database was enriched by the online MassBank of North America (MoNA) and is metadata-centric (https://mona.fiehnlab.ucdavis.edu).
Solutions and calibration levels
A mixture of chloroform and methanol (2: 1, v/v) was used as a solvent matrix to prepare standard stock solutions and all other dilutions. A 1 liter of this solvent was bubbled with nitrogen gas, 99.999%, for 1 min to expel any dissolved oxygen. The internal standard (IS) solution mixture was prepared in this solvent to contain 50 ng/μL of each: oleoyl-L-carnitine-d9, cholesterol-d6, and 7-ketocholesterol-d7. The stock calibrant solution mixture containing 500 μg/μL of each acylcarnitine, cholesterol, and oxysterol was prepared and kept at 4 °C in a glass vial sealed under nitrogen gas. A serial dilution mixture of this stock calibrant mixture was prepared to get a concentration range of 2 to 120 ng/μL for each analyte. A volume of 5 μL was injected for LC-MS analysis. Seven calibration solution levels were prepared by mixing 25 μL of the internal standard solution mixture with 25 μL of the calibrant mixture. The final concentration of the calibrant has spanned a range of 1 to 60 ng/μL with a constant concentration of each IS, 25 ng/μL.
Blood sample collection
Patients suffering from the general symptoms of COVID-19 infection, including fever, chest pain with respiratory complaints, and general fatigue, were immediately subjected to the polymerase chain reaction (PCR) test. The nasopharyngeal swab sample was collected from the COVID-19 candidate and exposed to the PCR testing method because of its high specificity and sensitivity [36]. This study included only the hospitalized patients clinically diagnosed and categorized as having moderate and severe COVID-19 infection in compliance with the international guidelines of COVID-19 case severity [37]. Patients diagnosed as asymptomatic were excluded.
The ethical committee approved the blood sample collection at King Abdulaziz University Hospital, reference number 408-20, and the National Committee of Biology and Medical Ethics registration number is “HA-02-J-008”. The study exclusion criteria included pregnant women, volunteers receiving any hypolipidemic drugs, diabetic patients, cases who received streptokinase injections, and acute cases under mechanical ventilation. Each group involved 30 volunteers involving, male and female, equally. Included volunteers aged 40 to 75 years old, admitted to the hospital and under medical supervision. Informed consent was read, understood, and signed by the patients. Healthy volunteers were also selected carefully and had recent medical investigation data at King Abdulaziz University Hospital, Jeddah, Saudi Arabia.
A volume of 5 mL of blood sample was collected from the arm vein over sodium-EDTA, swirled, and immediately sent to the analysis lab. The blood samples were centrifuged at 3000 rpm for 15 min. The supernatant plasma was aspirated with a Pasteur pipette, transferred to a 7-mL brown-glass vial, and kept at -80 °C. The red residue was mixed with 5 mL saline (0.9% sodium chloride in water, w/v), mixed by gently swirling, and centrifuged at 3000 rpm/10 min. The upper aqueous layer was aspirated and rejected. The remaining erythrocytes were then vortexed for 1 min and left in a sonication bath for 15 min to homogenize the ruptured erythrocytes. The samples of the homogenate erythrocytes were extracted immediately or otherwise kept at -80 °C until analysis. The samples were stored in 7-mL brown-glass vials, flushed with nitrogen gas, labeled, and tightly screw-capped before storage or analysis.
Calibration curve and assay method
Oleoyl-L-carnitine-d9 (+m/z 435.4), was used as an internal standard for the assay of the targeted acylcarnitines, but cholesterol-d6 (+m/z 375.3) was used as an internal standard for the assay of cholesterol. At the same time, 7-ketocholesterol-d7 (+m/z 408.3) was used as an internal standard for the assay of oxysterols, including 7-KCh, 4-Chn, 4,6-cholestadien-3-one, 4β-hydroxycholesterol-4-acetate, and 4β-hydroxycholesterol. The calibration parameters are shown in Table 1. The calibration curves were constructed by plotting the MS-relative response of the analyte to the IS (Y-axis) and the concentration of the targeted analyte (X-axis). The squared regression coefficient was close to unity, and the response factor was close to 0.04. The ESI source was maintained and tuned daily at +m/z 524.33 to minimize the ionization suppression due to the contamination of the ion source. Samples that showed an analyte concentration outside the calibration range were diluted or concentrated by nitrogen gas to get an MS response within the valid range.
Sample preparation for the analysis
The glass vial containing the homogenate of erythrocytes was vortexed for 10 sec. A volume of 100 μL was transferred to a screw-capped 15-mL glass test tube, mixed with 6 mL of the extraction solvent (chloroform: methanol, 2: 1, v/v), 25 μL of the IS solution mixture, and left under a gentle stream of nitrogen gas for 30 sec before capping. This mixture was vortexed for 2 minutes, sonicated for 15 minutes, vortexed for 30 seconds, and centrifuged at 5000 rpm for 15 minutes. The organic layer was separated by decantation to a 25-mL syringe fitted with a 0.22 μm PTFE filtration membrane, filtered into a 15-mL glass test tube, and dried with nitrogen gas over a water bath adjusted at 40 °C. The remaining residue was quantitatively transferred to a total recovery vial 1-mL using 200 μL of the same extraction solvent and gently bubbled with nitrogen gas to dryness. The residue was reconstituted in 50 μL chloroform and methanol; 2: 1, v/v, capped under nitrogen gas, vortexed, and a volume of 5 μL was injected for LC-IT-MS analysis.
Statistical analyses
The quantitative results collected from the analysis of the targeted analytes were statistically evaluated by using principal component analysis (PCA) to determine the score profile using Multivariate Statistical Package software (MVSP, version 3.22, Kovach Computing Services, Pentraeth, Isle of Anglesey, UK, 2013).