Materials
Luria Bertani (LB) broth, LB agar and potato dextrose agar (PDA) were purchased from Beijing Land Bridge. Singlet oxygen sensor green (SOSG) kit was acquired from Molecular Probes Inc. (Eugene, Oregon, USA). Propidium iodide (PI) was obtained from KeyGen Biotech (Nanjing, China). Glutaraldehyde, 3-(4,5- dimethyl-2-thiazolyl)-2,5-diphenyl-2-H-tetrazolium bromide (MTT), methanol, ethanol, dimethyl sulfoxide (DMSO), and triton X-100 were purchased from Aladdin Chemistry Co., Ltd. (Shanghai, China). Reactive oxygen species assay kit was bought from Beyotime Biotech Inc. (Shanghai, China). All other chemicals used in this study were purchased from Sigma-Aldrich (St. Louis, MO, USA). All solutions were prepared with deionized water (18.2 MΩ cm) purified by a Milli-Q water purification system (Milli-Q, Millipore, USA).
Sorbicillinoids production
The conidia produced by Trichoderma reesei strain ZC121 grown on PDA plates for 7 days at 28 °C, were inoculated into 10 mL sabouraud dextrose broth (SDB) and incubated for 48 h with 200 rpm at 28 °C. Pre-grown mycelia were inoculated with an inoculation ratio of 10% (v/v) into 50 mL Trichoderma minimal media [39] (TMM) with 2% glucose, and then incubated for 120 h with 200 rpm at 28 °C. The suspension was centrifuged at 14000 rpm for 15 min at 4 °C to remove Trichoderma reesei cells and other solid materials, and the supernatant was dried at 120 °C in an oven. The obtained powder was dissolved in methanol to remove inorganic salt. Methanol was evaporated at 60 °C under a nitrogen atmosphere to obtain sorbicillinoids. TMM medium was composed of the following chemicals (all concentration unit is g/L unless otherwise noted): (NH4)2SO4, 4.0; KH2PO4, 6.5; Tween-80, 0.0186% (v/v); Yeast extract, 0.75; Tryptone, 0.25; Maleic acid, 11.6; FeSO4·7H2O, 0.005; MnSO4·H2O, 0.0016; ZnSO4·7H2O, 0.0014; CoCl2·6H2O, 0.002; MgSO4, 0.60; CaCl2, 0.60; urea, 1.0. Then the pH of TMM was adjusted to 5.8 by NaOH.
Singlet oxygen generation
The generation of 1O2 was measured with singlet oxygen sensor green (SOSG). 1 mL SOSG dissolved in methanol was mixed with 2 mL 0.9% NaCl and 50 mg/mL sorbicillinoids in 0.9% NaCl, followed by UV light (2 mW/cm2) or white light irradiation (8 mW/cm2). 0.9% NaCl without any light irradiation was set as control. Then, the fluorescence intensity of the samples at 528 nm was measured by a spectrofluorophotometer (RF-5301PC, Shimadzu, Japan).
Antibacterial activity
Escherichia coli (E. coli), and Staphylococcus aureus (S. aureus) were selected to present Gram-negative and Gram-positive bacteria, respectively. E. coli or S. aureus were cultivated overnight in LB medium at 37 °C with 200 rpm. Bacteria were obtained from bacteria suspension overnight by centrifugation at 8000 rpm for 5 min and then resuspended in 0.9% NaCl. The optical density of the resuspension at 600 nm (OD600) was measured using a UV-vis spectrophotometer (UV-2600, Shimadzu, Japan). Then, the resuspension was diluted to OD600 = 0.5 with 0.9% NaCl. After the dilution, 100 mL bacteria suspension was mixed with 900 mL sorbicillinoids dissolved in 0.9% NaCl at different concentrations. The final concentrations of sorbicillinoids were 0, 50, 100, 200, 250, and 300 mg/mL. for S. aureus (0, 200, 400, 600, 800, and 1000 mg/mL. for E. coli). After irradiation under UV light (2 mW/cm2) for 30 min, 100 mL solution was plated on LB agar plates. The plates were placed in an incubator at 37 °C for 24 h, followed by colony counting. Antibacterial activity of sorbicillinoids against Gram-negative bacterium Proteus vulgaris (P. vulgaris), and Gram-positive bacteria Bacillus subtilis (B. subtilis) and Micrococcus luteus (M. luteus), were also tested in the same way.
Intracellular ROS generation
2,7-dichlorofluorescein diacetate (DCFH-DA) was applied to measure the generation of intracellular ROS. 0.5 mL DCFH-DA was added into 500 mL bacteria suspension (OD600 =0.05), followed by incubation at 37 ℃ for 10 min. After centrifugation at 8000 rpm for 5 min, bacteria were resuspended in 500 mL water, supplemented with 5 mL sorbicillinoids (10 mg/mL for S. aureus and 40 mg/mL for E. coli) dissolved in water. After incubation at 37 ℃ for 30 min, the suspension was irradiated under UV light (2 mW/cm2) for 30 min. The fluorescence intensity was measured by a flow cytometer (NovoCyte™ 2060, ACEA, USA). Channel used for analyses was FITC with the excitation at 488 nm.
Agarose gel electrophoresis of bacterial genomic DNA
The genomic DNA of bacteria was extracted with the Bacterial DNA kit which was bought from TIAGEN Biotech Co., Ltd. (Beijing, China). The bacteria cell (1 × 106 CFU/mL) with different treatments as indicated in the antibacterial activity assay were collected by centrifugation at 8000 rpm for 5 min and then washed twice with 0.9% NaCl. The genomic DNA was extracted according to manufacturer’s instruction. Briefly, the bacterial cells were separately resuspended in 200 µL GA buffer, 20 µL proteinase K solution and 220 µL GB buffer. After incubation at 70 ℃ for 10 min, 220 µL ethanol was added into each sample. Then the solution was transferred to a spin column CB3 and washed with GD buffer and PW washing solution. After that, the genomic DNA was bound onto the spin column and then eluted with TE buffer. The extracted DNA was analyzed by electrophoresis in Tris Acetate-EDTA (TAE) buffer containing 0.8% agarose (w/v) for 50 min at 100 V. The electrophoretic profiles were acquired with a Gel imaging system (Tanon 3500R, Shanghai, China).
PI Staining
The bacterial cells (1 × 106 CFU/mL) with different treatments as indicated in the antibacterial activity assay were incubated at 37 ℃ for 2 h and then collected by centrifugation at 8000 rpm for 5 min. After the centrifugation, the bacteria were stained with red-fluorescent nucleic acid stain (PI) for 30 min. The bacteria samples were imaged using a confocal microscope (TCS SP8, Leica, Germany).
Morphological Characterization of Bacteria
Morphological characterization of bacteria was carried out with a scanning electron microscope (SEM, ULTRA Plus, Zeiss, Germany). The bacterial cells (1 × 106 CFU/mL) with different treatments as indicated in the antibacterial activity assay were collected by centrifugation at 8000 rpm for 5 min and then resuspended in 0.9% NaCl. After washing with 0.9% NaCl three times, the bacteria cells were mixed with 2.5% (v/v) glutaraldehyde for 12 h to fix the cell morphology, followed by dehydration using graded ethanol (30%, 50%, 70%, 90%, and 95%). Then the bacterial cells were resuspended in 100% ethanol and dripped in a silicon slide for SEM imaging.
Cytotoxicity Evaluation
The toxicity of sorbicillinoids towards AT-II (normal human lung cell) by MTT assay. AT-II cells were cultivated in Dulbecco's modified eagle medium (DMEM), containing 10% fetal bovine serum, 100 U/mL of penicillin, and 100 µg/mL streptomycin in an incubator with 5% CO2 at 37 °C. The cells were seeded in a 96-well plate at a density of 5000 cells per well. After 24 h of culture, the cells were mixed with sorbicillinoids dissolved in DMEM at the final concentrations of 0 50, 100, 150 200, 250, 300, 350, 400 and 450 mg/mL, followed by 24 h of culture. Then, 10 mL of MTT (5 mg/mL) was added into each well. After incubation for 4 h, the solution was removed and 150 mL DMSO was added into each cell. Then, the absorbance at 492 nm was measured with a microplate photometer (Multiskan FC, Thermo Fisher Scientific, USA).
Hemolysis activity
Fresh blood was collected from a healthy male mouse and restored in an anticoagulation tube to avoid the blood coagulation. Red blood cells (RBCs) were obtained from the blood by centrifugation at 2000 rpm for 5 min and resuspended in 0.9% NaCl. The obtained RBCs were treated with different concentrations of sorbicillinoids (50, 100, 200, 250, and 300 mg/mL) for 2 h at 37 °C, and centrifuged at 2000 rpm for 5 min. Then the resultant supernatants were transferred to a 96-well plate for the absorbance measurement at 492 nm with a microplate photometer (Multiskan FC, Thermo Fisher Scientific, USA). RBCs treated with phosphate-buffered saline (PBS) and triton X-100 were set as the negative control and positive control, respectively. The hemolysis percentage was calculated by the following formula:
Hemolysis%= [(absorbance of samples – absorbance of negative control) / (absorbance of positive control – absorbance of negative control)] × 100%.