Patient characteristics
From 2006 to 2014, 869 stage II-III colon carcinoma patients who histologically and clinically diagnosed were treated with surgery, followed with postoperative adjuvant chemotherapy (high-risk stage II and stage III patients), and were followed-up once every 6 months postoperatively for 5 year at China Medical University Hospital (CMUH). Adjuvant chemotherapy regimens were administered as previously described [5, 14]. This study was reviewed and approved by the Institutional Review Board (IRB) of CMUH [Protocol number: CMUH105-REC2-073].
Genomic DNA extraction and SNP genotyping
Genomic DNA from non-tumor tissues of rectal cancer patients was extracted from two 5 μm thick FFPE slides using a QIAamp® DNA FFPE Extraction Kit (QIAGEN GmbH, Hilden, Germany). For SNP genotyping, 10 ng of total genomic DNA was used for PCR amplifcation and was performed using the iPLEX® HS panel on the MassARRAY ® System (Agena Bioscience, San Diego, CA, USA), which employs matrix-assisted laser desorption/ionization time-offight mass spectrometry for amplicon detection (MALDITOF-MS; SpectroACQUIRE, Agena Bioscience). Primers designed (Supplementary Table 1) for PCR amplifcation of specifc polymorphisms and extension reactions were prepared using MassARRAY® Assay Design Version 3.1 software (Agena Bioscience, San Diego, CA, USA). Following PCR, SAP addition, and the iPLEX HS® extension reaction, the samples were desalted by resin treatment for 15 min, spotted onto SpectroCHIP® Arrays (Agena Bioscience, San Diego, CA), analyzed by mass spectrometry, and ultimately interpreted using SpectroTYPER v4.0 software (Agena Bioscience, San Diego, CA). The characteristics of the selected polymorphisms are shown in Table 1.
Cell line
Three human colorectal cancer cell line HT29-GFP, monocytic leukemia cell line THP-1 and human T cell leukemia Jurkat cell were cultured in RPMI 1640 medium supplemented with 10% fetal bovine serum (Hyclone, MA, USA) at 37°C with a humidified atmosphere of 5% CO2 and 95% air.
Western blot analysis
Total cell lysates (20-40 μg) were separated via 6–12% SDS-PAGE and transferred onto a PVDF membrane (Millipore, MA, USA) [24]. The membranes were blocked with BlockPRO™ Blocking buffer (BioLion biotech, Taipei, Taiwan), probed with specific antibodies overnight at 4°C, and then incubated with HRP-conjugated secondary antibodies for 1 hr. After antibodies incubation, the membranes were incubated with Immobilon Western Chemiluminescent HRP Substrate (Millipore), and analyzed by ImageQuant™ LAS 4000 biomolecular imager (GE Healthcare, Amersham, UK). The digital data were processed using Adobe Photoshop and quantified using Image J software (NIH, MD, USA). Each blot was stripped by Immunoblotting Stripping Buffer (BioLion Tech.) before re-probing with the other antibodies. The antibodies used in western blot analysis were listed: anti-p-IKKa/b (AP0546, Abclonal), anti-p-JNK (AP0631, Abclonal) and anti-TLR1 (A0997, Abclonal)[25, 26].
THP1-derived immature DC and colorectal cancer cell line co-culture
Human monocytic leukemia cell line THP-1 cells were cultured and maintained in RPMI1640 medium supplemented with 10% FCS (Life Technologies, Grand Island, New York, USA), 2 mM glutamine, 1 mM sodium pyruvate, 100 U/ml penicillin, and 100 mg/ml streptomycin at 37 ˚C in a humidified incubator with 95% air and 5% CO2. After gene was silenced by lentivirus carrying shRNA against indicated genes, immature DC were generated from THP-1 as previously described [27]. Briefly, THP-1 cells were differentiated to immature DC by adding with 1500 IU/ml rhIL-4 (Sino Biological, Beijing, China) and 1500 IU/ml rhGM-CSF (Sino Biological, Beijing, China) in culture medium for at least 7 days, with cytokine-supplemented culture medium changed every 2-3 days at 37 ˚C in a humidified incubator with 95% air and 5% CO2. These THP1-iDC cells were treated with recombinant human HMGB1 (Sino Biological, Beijing, China) for 24 hr. The DC maturation was measured by flow cytometry. These THP1-iDC cells were also co-cultured with OXP-treated HT29-GFP cells to analyze the DC maturation marker CD86 by flow cytometry. Besides, human T cell leukemia Jurkat cell line was co-incubated with OXP-treated HT29-GFP/THP1-iDC for 15 hr to analyze the level of IFNg .
Animal model
BALB/c mice (female, 5 weeks old) were maintained according to the institutional guidelines approved by the Institutional Animal Care and Use Committee of China Medical University. CT26 (2x105 cells/mouse) were suspended in 100 mL 20% Matrigel, and subcutaneously inoculated into right flank of each mouse. After 10 days, mice were administrated with oxaliplatin (OXP, 6 mg/kg/mouse, intraperitoneal injection) for 4 times with 3-day interval on day 13, 16, 19, 22 and 25. TLR1/2 antagonist CU-CPT22 (2.5mg/kg, HY-108471, MCE) and TLR1/2 agonist Pam3CSK4 (2.5mg/kg, HY-P1180, MCE). The tumor volume was measured with 3-day interval in the study, and tumor volumes were calculated according to the formula (width2 × length)/2. The mice were sacrificed at the end of the experiments, and the tumor tissues were collected for further analysis including immunoblotting analysis and immunohistochemistry [28, 29].
Tumor processing to isolate tumor-infiltrating lymphocytes (TILs) and lymph node for flow cytometry.
For analysis of tumor-infiltrating immune cells, mice from each treatment group were sacrificed on day 28, and their tumors and tumor-draining lymph nodes were isolated. Isolated tumors and lymph nodes were weighed, mechanically dissected into small pieces (1–2 mm) by beaver blade, then filtered through 70-μm nylon cell strainer, and then resuspended in blank RPMI media. Thereafter, the cell suspensions were layered over Ficoll-Paque media, centrifuged at 1,025 g for 20 min, transfer the layer of mononuclear cells into a conical tube and added 20 ml with complete RPMI media, and then gently mix and centrifuge at 650 g for 10 min for twice. Finally, removed the supernatant and resuspended the TILs with complete RPMI media.
For Treg staining, these cells were fixed and permeablized with FoxP3 Fix/Perm buffer kit from Biolegend according to the manufacturer’s instructions and then stained with intracellular antibodies for further analysis by flow cytometry. For quantification, the absolute numbers of different cell types per gram of tumor were measured by flow-cytometric analysis. For surface marker staining, TILs were resuspended in 500-μL staining buffer (2% BSA, 0.1% NaN3 in PBS). The cells were stained with different surface marker panels: (1) T cells phenotype: CD3-FITC (100204, Biolegend, CA, USA), CD4-APC/FireTM750 (116020, Biolegend, CA, USA), CD8a-PerCPCy5.5 (100734, Biolegend, CA, USA), CD44-PE (103008, Biolegend, CA, USA), CD45-PECy7 (103114, Biolegend, CA, USA), CD62L-APC (104412, Biolegend, CA, USA) and their isotype; (2) Regulatory T lymphocyte (Treg): FoxP3-Alexa488 (126406, Biolegend, CA, USA), CD25-PE (101904, Biolegend, CA, USA), CD3-PerCPCy5.5 (100218, Biolegend, CA, USA), CD45-PECy7 (103114, Biolegend, CA, USA), CD127-Alexa647 (135020, Biolegend, CA, USA), CD4-APC/FireTM750 (116020, Biolegend, CA, USA), and their isotype; (3) IFNg+CD8+ T cells: CD3-FITC (100204, Biolegend, CA, USA), IFNg-PE (505808, Biolegend, CA, USA), CD45-PECy7 (103114, Biolegend, CA, USA), CD8-APC/FireTM750 (100766, Biolegend, CA, USA) and their isotype. Data were acquired on Guava easyCyte flow cytometer and analyzed by FlowJo Software [30, 31].
Statistical analysis
The statistical analysis was analyzed by SPSS (IBM SPSS Statistics 22, WA, USA) and GraphPad Prism 7 (GraphPad Software, San Diego, CA, USA) were utilized. A two-sided p<0.05 as a significance level for all tests such as Student’s t-test, Pearson chi-square test and Fisher’s exact test. The univariate and multivariate analysis was performed by Cox regression analysis to estimate the hazard ratios (HRs) and 95% confidence intervals (CIs). These influential factors were adjusted in the Cox models— including gender (male versus female), age (≥65 versus<65), pT stage (pT 3-4 versus pT 1-2), tumor location (proximal versus distal), tumor differentiation (poor versus well to moderate), LVI (present versus absent), PNI (present versus absent) and TLR1-N248 (Variant versus WT) and TLR2 promoter (Variant versus WT). The Kaplan-Meier analysis was used to assess the distant metastasis-free survival (DMFS) and disease-free survival (DFS) with the survival time between surgery to event such as tumor relapse and death.