Identification of volatile organic compounds (VOCs) profiling
A total of 66 volatile organic compounds (VOCs) were identified in the four lavender varieties by HS-SPME-GC/MS. The VOCs were mainly divided into monoterpenoids and sesquiterpenoids (Fig. 2a). In monoterpenoids, monoterpenes (10), and monoterpene oxides (10) had the same proprotion (14.49%). Besides, monoterpene alcohols (8) accounted for 11.59%, the rest of compounds were monoterpene esters (2), aldehydes (1), and ketones (4). Sesquiterpenes (16) accounted for the vast majority of sesquiterpenoids, there were no esters, aldehydes, and ketones in this group (Fig. 2b). Principal component analysis (PCA) is a technique for showing the general metabolic differences between groups and variation within the group. Then we performed PCA to further classify these samples (Fig. 2c). The results showed that the first principal component (PC1) could explain 42.00% of the total variance and separated samples. The second principal component (PC2) could explain 23.00% of the total variance. The samples with three replicates were gathered into each group and significantly varied among different groups among different lavenders. The VOCs of flowers in four lavenders were relatively close, but the VOCs of leaves had large variation. Therefore, these results suggested that the compounds of different varieties of plants had variation, the compounds of different tissue parts of the same varieties also were disparate.
Hierarchal clustering of the VOCs profile was performed, and the results are shown in Fig. 2d. There were three main clusters in these samples. For leaves, ‘Jingxun 1’ and ‘Jingxun 2’ were clustered into a group, ‘Luoshen’ and ‘Taikonglan’ were clustered into another group. For flowers, these four lavenders were clustered into one group. The results were in accord with PCA. It indicated that VOCs of flowers and leaves in lavenders were very important for elucidating the mechanisms of aroma variation. Accordingly, the details of these differentially expressed VOCs were analyzed in this study.
The chemical compositions of four lavenders are shown in Table 1. The prominent components were linalyl acetate and linalool in flowers. They were characteristic constituents. Linalyl acetate in ‘Jingxun 2’, ‘Luoshen’ and ‘Taikonglan’ were 85.16 mg/g, 93.19 mg/g and 88.28 mg/g, but the content was only 4.01 mg/g in ‘Jingxun 1’. Interestingly, no matter what kind of components of leaves in ‘Jingxun 2’ and ‘Luoshen’, the contents were all below 1.00 mg/g. These indicated that flowers were the main site of accumulation of VOCs. Besides, lavandulol acetate and β-caryophyllene placed a great deal of weight (Fig. 2e).
Table 1 Terpenoid components of leaves and flowers in four lavenders.
No.
|
RT
|
RI
|
Terpenoid
|
‘Jingxun 1’ (mg/g)
|
‘Jingxun 2’ (mg/g)
|
‘Luoshen’ (mg/g)
|
‘Taikonglan’ (mg/g)
|
Flower
|
Leaf
|
Flower
|
Leaf
|
Flower
|
Leaf
|
Flower
|
Leaf
|
1
|
5.176
|
929
|
α-Thujene
|
-
|
0.12 ± 0.02
|
-
|
-
|
-
|
-
|
-
|
-
|
2
|
5.234
|
937
|
α-Pinene
|
-
|
-
|
-
|
0.02 ± 0.01
|
-
|
-
|
-
|
-
|
3
|
5.515
|
952
|
Camphene
|
-
|
0.12 ± 0.02
|
-
|
0.08 ± 0.04
|
-
|
0.08 ± 0.02
|
-
|
0.12 ± 0.02
|
4
|
6.111
|
980
|
1-Octen-3-ol
|
-
|
0.25 ± 0.04
|
2.25 ± 0.17
|
0.03 ± 0.01
|
1.31 ± 0.03
|
0.02 ± 0.00
|
0.96 ± 0.06
|
0.02 ± 0.00
|
5
|
6.465
|
991
|
β-Myrcene
|
-
|
-
|
1.25 ± 0.26
|
-
|
-
|
-
|
-
|
-
|
6
|
6.975
|
1011
|
3-Carene
|
-
|
0.09 ± 0.00
|
-
|
0.01 ± 0.01
|
-
|
-
|
-
|
-
|
7
|
6.975
|
1011
|
Hexyl acetate
|
-
|
-
|
2.95 ± 0.46
|
-
|
-
|
-
|
-
|
-
|
8
|
7.286
|
1023
|
β-Cymene
|
-
|
1.92 ± 0.93
|
-
|
0.06 ± 0.03
|
-
|
0.08 ± 0.00
|
-
|
0.10 ± 0.00
|
9
|
7.324
|
1025
|
p-Cymene
|
-
|
-
|
1.50 ± 0.00
|
0.16 ± 0.08
|
-
|
0.21 ± 0.01
|
-
|
0.29 ± 0.01
|
10
|
7.423
|
1030
|
Limonene
|
0.10 ± 0.04
|
1.75 ± 0.80
|
3.68 ± 0.19
|
0.16 ± 0.00
|
2.23 ± 0.54
|
-
|
2.16 ± 0.16
|
0.07 ± 0.03
|
11
|
7.503
|
1032
|
Eucalyptol
|
0.19 ± 0.07
|
0.87 ± 0.13
|
6.45 ± 0.27
|
0.30 ± 0.06
|
8.89 ± 0.69
|
1.77 ± 0.31
|
7.78 ± 0.52
|
2.12 ± 0.19
|
12
|
7.632
|
1037
|
β-cis-Ocimene
|
1.47 ± 0.22
|
-
|
34.56 ± 4.50
|
-
|
11.66 ± 0.52
|
-
|
9.15 ± 1.06
|
-
|
13
|
7.875
|
1049
|
β-trans-Ocimene
|
-
|
-
|
-
|
-
|
1.70 ± 0.03
|
-
|
1.57 ± 0.06
|
-
|
14
|
8.388
|
1070
|
trans-Sabinene hydrate
|
-
|
0.08 ± 0.04
|
-
|
-
|
-
|
-
|
-
|
-
|
15
|
8.419
|
1067
|
cis-Sabinene hydrate
|
-
|
-
|
-
|
0.01 ± 0.01
|
-
|
-
|
-
|
-
|
16
|
8.559
|
1074
|
Linalool oxide
|
-
|
-
|
-
|
-
|
-
|
0.02 ± 0.00
|
-
|
-
|
17
|
8.856
|
1093
|
Rosefuran
|
-
|
0.09 ± 0.00
|
-
|
0.01 ± 0.00
|
-
|
-
|
-
|
-
|
18
|
8.977
|
1086
|
trans-Linalool oxide
|
-
|
-
|
-
|
-
|
-
|
0.02 ± 0.00
|
-
|
-
|
19
|
9.305
|
1099
|
Linalool
|
2.43 ± 0.21
|
-
|
49.03 ± 6.03
|
-
|
51.97 ± 1.94
|
-
|
47.11 ± 2.57
|
-
|
Continued Table 1
No.
|
RT
|
RI
|
Terpenoid
|
‘Jingxun 1’ (mg/g)
|
‘Jingxun 2’ (mg/g)
|
‘Luoshen’ (mg/g)
|
‘Taikonglan’ (mg/g)
|
Flower
|
Leaf
|
Flower
|
Leaf
|
Flower
|
Leaf
|
Flower
|
Leaf
|
20
|
9.571
|
1111
|
Amyl vinyl carbinol acetate
|
0.23 ± 0.03
|
0.48 ± 0.05
|
9.29 ± 1.87
|
0.05 ± 0.02
|
7.02 ± 0.58
|
0.23 ± 0.06
|
5.92 ± 0.06
|
0.16 ± 0.01
|
21
|
9.875
|
1122
|
cis-2-Menthenol
|
-
|
0.08 ± 0.07
|
-
|
0.01 ± 0.00
|
-
|
-
|
-
|
-
|
22
|
10.231
|
1134
|
Limonene oxide, cis-
|
-
|
0.18 ± 0.09
|
-
|
-
|
-
|
-
|
-
|
-
|
23
|
10.251
|
1144
|
trans-Verbenol
|
-
|
-
|
-
|
0.01 ± 0.01
|
-
|
-
|
-
|
-
|
24
|
10.303
|
1138
|
Limonene oxide, trans-
|
-
|
0.10 ± 0.01
|
-
|
0.01 ± 0.01
|
-
|
-
|
-
|
-
|
25
|
10.509
|
1145
|
Camphor
|
-
|
0.69 ± 0.02
|
1.49 ± 0.51
|
0.08 ± 0.04
|
1.62 ± 0.24
|
0.80 ± 0.10
|
1.55 ± 0.09
|
0.74 ± 0.06
|
26
|
11.075
|
1167
|
endo-Borneol
|
0.18 ± 0.06
|
1.78 ± 0.30
|
7.84 ± 0.89
|
0.20 ± 0.09
|
4.30 ± 0.40
|
0.90 ± 0.10
|
3.78 ± 0.28
|
1.03 ± 0.05
|
27
|
11.208
|
1174
|
(3E,5Z)-1,3,5-Undecatriene
|
0.04 ± 0.00
|
-
|
1.54 ± 0.10
|
-
|
-
|
-
|
-
|
-
|
28
|
11.398
|
1177
|
Terpinen-4-ol
|
0.54 ± 0.06
|
-
|
1.85 ± 0.36
|
0.01 ± 0.00
|
11.29 ± 0.63
|
-
|
9.52 ± 0.84
|
-
|
29
|
11.485
|
1183
|
p-Cymen-8-ol
|
-
|
0.21 ± 0.00
|
-
|
0.03 ± 0.01
|
-
|
0.05 ± 0.00
|
-
|
0.06 ± 0.01
|
30
|
11.581
|
1184
|
Cryptone
|
0.08 ± 0.03
|
1.02 ± 0.01
|
2.78 ± 0.20
|
0.11 ± 0.05
|
1.33 ± 0.10
|
0.06 ± 0.01
|
1.36 ± 0.14
|
0.11 ± 0.03
|
31
|
11.756
|
1192
|
Hexyl butyrate
|
0.04 ± 0.00
|
-
|
4.26 ± 0.46
|
-
|
2.25 ± 0.01
|
-
|
2.24 ± 0.11
|
-
|
32
|
11.76
|
1189
|
α-Terpineol
|
-
|
0.07 ± 0.00
|
-
|
0.01 ± 0.01
|
-
|
-
|
-
|
-
|
33
|
12.212
|
1208
|
trans-Piperitol
|
-
|
-
|
-
|
0.01 ± 0.00
|
-
|
-
|
-
|
-
|
34
|
12.269
|
1205
|
Verbenone
|
-
|
-
|
-
|
0.01 ± 0.00
|
-
|
-
|
-
|
-
|
35
|
12.634
|
1243
|
Eucarvone
|
-
|
-
|
-
|
0.01 ± 0.00
|
-
|
-
|
-
|
-
|
36
|
12.805
|
1232
|
Isobornyl formate
|
-
|
0.30 ± 0.01
|
-
|
0.04 ± 0.02
|
-
|
0.17 ± 0.03
|
-
|
0.16 ± 0.03
|
37
|
13.089
|
1239
|
Cuminal
|
-
|
0.57 ± 0.09
|
1.13 ± 0.10
|
-
|
-
|
0.06 ± 0.00
|
0.97 ± 0.12
|
0.11 ± 0.02
|
38
|
13.192
|
1242
|
Carvone
|
-
|
0.28 ± 0.02
|
-
|
0.03 ± 0.01
|
-
|
-
|
-
|
0.04 ± 0.01
|
Continued Table 1
No.
|
RT
|
RI
|
Terpenoid
|
‘Jingxun 1’ (mg/g)
|
‘Jingxun 2’ (mg/g)
|
‘Luoshen’ (mg/g)
|
‘Taikonglan’ (mg/g)
|
Flower
|
Leaf
|
Flower
|
Leaf
|
Flower
|
Leaf
|
Flower
|
Leaf
|
39
|
13.481
|
1253
|
Piperitone
|
-
|
0.19 ± 0.00
|
-
|
0.01 ± 0.00
|
-
|
0.02 ± 0.00
|
-
|
0.03 ± 0.01
|
40
|
13.546
|
1257
|
Linalyl acetate
|
4.01 ± 0.55
|
-
|
85.16 ± 5.28
|
-
|
93.19 ± 5.16
|
-
|
88.28 ± 0.07
|
-
|
41
|
14.344
|
1285
|
Bornyl acetate
|
-
|
0.07 ± 0.00
|
1.81 ± 0.10
|
0.05 ± 0.03
|
1.14 ± 0.13
|
0.09 ± 0.01
|
1.12 ± 0.04
|
0.12 ± 0.02
|
42
|
14.42
|
-
|
Lavandulol acetate
|
0.95 ± 0.02
|
0.94 ± 0.05
|
49.81 ± 3.85
|
0.36 ± 0.28
|
23.28 ± 1.83
|
-
|
25.28 ± 2.65
|
0.07 ± 0.03
|
43
|
16.104
|
1351
|
α-Cubebene
|
-
|
-
|
-
|
0.01 ± 0.00
|
-
|
-
|
-
|
-
|
44
|
16.35
|
1364
|
Nerol acetate
|
-
|
0.13 ± 0.03
|
1.19 ± 0.11
|
0.01 ± 0.01
|
-
|
-
|
-
|
-
|
45
|
16.738
|
1376
|
Copaene
|
-
|
0.26 ± 0.07
|
-
|
-
|
-
|
-
|
-
|
-
|
46
|
16.841
|
1382
|
Geranyl acetate
|
0.06 ± 0.01
|
0.16 ± 0.01
|
1.57 ± 0.20
|
0.16 ± 0.03
|
1.20 ± 0.05
|
-
|
1.25 ± 0.15
|
-
|
47
|
16.894
|
1384
|
Hexyl hexoate
|
0.04 ± 0.00
|
-
|
0.90 ± 0.06
|
-
|
-
|
-
|
-
|
-
|
48
|
17.708
|
1411
|
α-Cedrene
|
-
|
-
|
-
|
0.02 ± 0.01
|
-
|
-
|
-
|
-
|
49
|
17.711
|
1415
|
cis-α-Bergamotene
|
-
|
0.18 ± 0.02
|
-
|
-
|
-
|
-
|
-
|
-
|
50
|
17.844
|
1420
|
Santalene
|
-
|
4.93 ± 0.11
|
-
|
0.36 ± 0.05
|
-
|
-
|
-
|
0.04 ± 0.01
|
51
|
17.871
|
1425
|
β-Caryophyllene
|
0.91 ± 0.05
|
-
|
29.44 ± 3.61
|
-
|
19.24 ± 0.60
|
-
|
17.56 ± 2.48
|
-
|
52
|
18.217
|
1435
|
α-Bergamotene
|
0.04 ± 0.00
|
-
|
1.93 ± 0.15
|
-
|
-
|
-
|
-
|
-
|
53
|
18.22
|
1441
|
Coumarin
|
-
|
1.61 ± 0.42
|
-
|
0.36 ± 0.07
|
-
|
0.43 ± 0.08
|
-
|
0.22 ± 0.10
|
54
|
18.471
|
1449
|
α-Himachalene
|
-
|
0.26 ± 0.07
|
-
|
0.02 ± 0.01
|
-
|
-
|
-
|
-
|
55
|
18.528
|
1448
|
Epi-β-Santalene
|
-
|
0.21 ± 0.01
|
-
|
0.02 ± 0.01
|
-
|
-
|
-
|
-
|
56
|
18.703
|
1457
|
(E)-β-Famesene
|
0.95 ± 0.06
|
-
|
18.60 ± 2.59
|
-
|
6.67 ± 0.66
|
-
|
6.49 ± 0.73
|
-
|
57
|
18.856
|
1462
|
β-Santalene
|
-
|
-
|
-
|
0.01 ± 0.00
|
-
|
-
|
-
|
-
|
Continued Table 1
No.
|
RT
|
RI
|
Terpenoid
|
‘Jingxun 1’ (mg/g)
|
‘Jingxun 2’ (mg/g)
|
‘Luoshen’ (mg/g)
|
‘Taikonglan’ (mg/g)
|
Flower
|
Leaf
|
Flower
|
Leaf
|
Flower
|
Leaf
|
Flower
|
Leaf
|
58
|
19.395
|
1481
|
Germacrene D
|
0.23 ± 0.02
|
-
|
11.12 ± 1.70
|
-
|
4.22 ± 0.29
|
-
|
4.14 ± 0.60
|
-
|
59
|
19.961
|
1508
|
α-Farnesene
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
-
|
60
|
20.177
|
1513
|
γ-Cadinene
|
-
|
0.51 ± 0.02
|
1.33 ± 0.05
|
0.28 ± 0.07
|
3.94 ± 0.92
|
0.06 ± 0.01
|
4.02 ± 0.10
|
0.12 ± 0.05
|
61
|
20.269
|
1508
|
α-Chamigrene
|
-
|
-
|
-
|
0.01 ± 0.00
|
-
|
-
|
-
|
-
|
62
|
20.383
|
1523
|
Calamenene
|
-
|
-
|
-
|
0.01 ± 0.00
|
-
|
-
|
-
|
-
|
63
|
20.618
|
1681
|
Sandal
|
-
|
0.85 ± 0.04
|
-
|
-
|
-
|
-
|
-
|
-
|
64
|
21.835
|
1581
|
Caryophyllene oxide
|
0.16 ± 0.02
|
0.31 ± 0.09
|
3.60 ± 0.14
|
0.38 ± 0.01
|
1.20 ± 0.06
|
0.06 ± 0.02
|
1.37 ± 0.29
|
0.13 ± 0.03
|
65
|
23.115
|
1646
|
Cadinol
|
-
|
0.12 ± 0.01
|
-
|
-
|
2.13 ± 0.59
|
-
|
2.07 ± 0.28
|
0.05 ± 0.02
|
66
|
24.895
|
1732
|
Herniarin
|
-
|
0.25 ± 0.00
|
-
|
-
|
-
|
0.06 ± 0.02
|
-
|
0.04 ± 0.02
|
Morphology and development of the glandular trichomes on L. angustifolia
The surface of the leaves is covered with glandular trichomes (GTs) of three types, peltate, capitate, and non-glandular trichomes (Fig 3a-h). They are located on the sepals (Supplementary Fig. S1), adaxial and abaxial side of leaves. But there is only capitate glandular trichomes on the petals, there were no peltate glandular trichomes on the petals (Fig. 3c). Peltate and capitate glandular trichomes all contained three parts including basal cells, stalk cells, and head cells, like GTs in other Lamiaceae plants [22, 23]. The gland is responsible for the secretion of specialized metabolites, the stalk is the structure bearing the gland, and the base connects the stalk to surrounding epidermal cells.
These three types of GTs not only situated on leaves and flowers, but also distributed on stems slightly, which were captured using a stereomicroscope (Supplementary Fig. S2). PGTs consisted of multicellular heads, one stalk cell, and one basal cell, which consist of eight cell disk-shaped head like orange segments and assumed a globular dome shape at maturity (Supplementary Fig. S3). CGTs were smaller than PGTs, they included a basal cell, a stalk cell, and a head of one to 2-4 cells, with the length of the stalk more than half the height of the head (Fig. 3d, e). PGTs and CGTs both have a storage cavity where secreted metabolites often accumulate in them. The cavity can be subcuticular: in that case, molecules secreted at the top of gland cells accumulate under the cuticle, which is gradually pushed away from the cell wall, as seen in A. annua glandular trichomes [24]. Non-glandular trichomes were dendritic: they had 4-6 arms branching off from the basal region (Fig. 3g, h). These trichomes were ubiquitous and their length was variable, they located on leaves, sepals, and stems densely.
We examined the developmental processes of PGTs. Trichome initiation occured when anepidermal cell acquired a trichome identity according to signals received from surrounding cells. This cell then underwent tightly controlled cell divisions from a periclinal bipartition to two cells (Fig. 4a, b); this was followed by cell divisions to form the head region and the stalk (Fig. 4c-e). On the longitudinal section of the peltate trichome, it was seen that the head cells had a dense cytoplasm (Fig. 4f-h) called secretory. The secretory cells were arranged radially. The main feature of the neck cell was the development of a fully cutinized lateral wall, resembling a Casparian strip (Fig. 4g-h). The large lipid inclusions were both in the secretory cells and in the neck cell. At the last stage, cuticle had formed (Fig. 4i). In this trichome type, essential oil were produced by these secretory cells, consisting of eight arranged on a plane with the storage space located above them, designated as subcuticular.
Comparison of quantity and diameter size of peltate glandular trichomes of four lavender varieties
We use fluorescence microscope to observe the glandular trichomes on leaves and flowers of five lavender varieties. The number of peltate glandular trichomes was significantly different in different organs and varieties (Fig. 5). The numbers of PGTs on abaxial and adaxial surface on leaves of ‘Jingxun 1’and ‘Jingxun 2’ were higher than ‘Luoshen’ and ‘Taikonglan’, especially on the abaxial surface of the leaves (Fig. 5a). The total number of PGTs on leaves of ‘Jingxun 1’ was maximum, the number of PGTs on leaves of ‘Taikonglan’ was minimum, meanwhile its number of PGTs on abaxial or adaxial surface was least. No matter what variety, the number of PGTs on abaxial surface of leaves was often more than on adaxial surface (Fig. 5b). These results indicated that trichome density is varieties and plant organ-specific. The diameter of PGTs on sepal was larger than that on leave, but there were no obvious differences between four lavender varieties (Fig. 5c). The average diameters of PGTs on sepal varied from 94.56 to 101.17 μm, the smallest diameter is about 54.41 μm (on the adaxial surface), the largest diameter is about 109.32 μm (on the sepal) (Supplementary Table S1). These suggested that lavender's essential oil came mainly from flowers.
Identification and characterization of R2R3-MYB-coding genes involved in the plant tissue development
We screened the ‘Jingxun 2’ genome database [5] and identified 51 R2R3-MYB proteins by performing a BLASTP analysis with A. thaliana, A. annua, Petunia hybrida, Antirrhinum majus, G. hirsutum, Medicago truncatula, Salvia miltiorrhiza, Solanum lycopersicum, Camellia sinensis, and Lactuca sativa R2R3-MYB proteins. Combined with transcriptome database [25], we found several genes, La23G02448, La22G02482, La19G00023, and La04G00020, which had high expression in flower (Fig 6a). Phylogenetic analysis (Fig. 6b) of our identified candidate MYBs showed that these genes clustered with the AaMYB1 and AtMYB61 that have a known function in terpenoid metabolism and trichome development in A. annua and A. thaliana [26]. Further analysis indicated that these genes also clustered with MYB factors from other species. Therefore, these genes were selected as a candidate gene for further investigation.
The amino acid alignment was performed against all of the proteins clustering with these four genes. High sequence conservation was noted at the N-terminus within the two MYB repeat domains known to be important for DNA binding (Fig. 6c). The presence of signature domain ‘GIDPXTHKPXSEV’or‘DVFXKDLQRMA’ demonstrated that they belonged to the subgroup 13 of R2R3-MYB factors [27]. Though previous studies reported that AtMYB61 played a pleiotropic role, influencing lignin deposition [28], mucilage production [29], and stomatal aperture [30]. AtMYB1 and AtMYB61 induced trichome initiation and branching in A. thaliana [26]. Here, we speculated these four candidate genes may relate to regulation of cell fate as the same as subgroup 9.