Patients and tissue specimens
101 BC and 43 normal paracancerous breast tissues samples were obtained from the Department of Breast Surgery, The Second Affiliated Hospital of Harbin Medical University (246 Xuefu Street, Nangang District, Harbin, China). The 101 patients were Asian women, aged from 33 to 77 years (median age of 49 years). Fresh BC tissues and adjacent normal tissues were frozen in liquid nitrogen immediately after surgical excision and stored at -80° C. Hematoxylin & eosin (H&E) staining of excised tissues was used for histologic validation of tissue types. This research was approved by the Ethic Committee of Harbin Medical University.
Inclusion criteria: 1) pathological diagnosis of invasive cancer; 2) operable breast cancer; 3) no preoperative treatment; 4) overall survival time ≥ 3 months; 5) complete clinical data and postoperative follow-up.
Exclusion criteria: 1) combined immune system diseases; 2) distant organ metastases; 3) surgical complications or infections; 4) history of antibiotic application within three weeks.
Ultrasound imaging assessment
Enrolled breast cancer patients were routinely examined by ultrasonographers before surgery. The patient is placed in a supine position with arms elevated. If necessary, the patient will be adjusted to the appropriate lateral position to allow scanning of the lateral and lower portions of the breast. The procedure of ultrasound scanning was as follows: firstly, the ultrasonic probe targets the lesion and surrounding breast tissue in the same quadrant, then the rest of the ipsilateral breast, finally, the contralateral breast. During the examination, the lesion site is evaluated in detail, and two-dimensional images of the mass, blood flow signal images, and elasticity score images are recorded, along with attention to the presence of spiculation after recording whether the boundaries of the mass are clear. The above ultrasound imaging evaluation of all patients was recorded using ultrasound machine (SuperSonic, Aixplorer) of Harbin Medical University Second Hospital.
Immunohistochemistry (IHC)
The tissue microarrays were made by the production company (SHANGHAI OUTDO BIOTECH CO.,LTD.) using 101 breast cancer and 43 normal paracancerous tissue wax blocks. After de-paraffinization and rehydration, tissue sections are incubated in antigen retrieval buffer and heated in a steamer at above 97°C for 20 min. All IHC staining was performed using Ventana Discovery XT Automated Slide Stainer (Ventana Medical Systems, Inc., Tucson, AZ, USA). Deparaffinization, antigen retrieval, blocking, DAB detection, counterstain, post-counterstain, and slide cleaning steps were automated on the Discovery XT. Primary antibodies and secondary antibodies were manually applied at programmed steps. Anti-Listeria monocytogenes (Genex, GTX11439, Mouse IgG) is applied to tissue sections overnight in a humidity chamber at a dilution of 1:800 at 4°C. After being washed in TBS, antigen-antibody binding is detected with the Envision+ system and DAB+ chromogen (DAKO). Tissue sections were briefly immersed in hematoxylin for counterstaining, washed with water and covered with coverslips. Slides were assessed by two pathologists blindly on a multi-headed microscope.
Bacteria culture
The species of L. monocytogenes (GOYJ13727) was obtained from (GuYan Biotech Co.,Ltd.(Shanghai,china)). Glycerol stock solutions with L. monocytogenes was generated. During this study, stock cultures were maintained in cryovials at a concentration of about 8.5 x 108 colony forming units/mL (cfu/mL) and at a temperature of 80° C. Before each experiment, bacterial broth subcultures from stock cultures were prepared by inoculating 100 mL of L. monocytogenes in a sterile flask containing 10 mL of Tryptone Soya Broth (TSB; Scharlab Chemie S.A., Barcelona, Spain), and incubated at 37 ° C for 12 h with agitation. Then an aliquot of 100 mL was again inoculated in 10 mL of TSB, and incubated at 37 ° C for 12 h under agitation. Bacterial suspension with a cell concentration of 108 cfu/mL was confirmed by plate counts on Tryptone Soya Agar (TSA; Scharlab Chemie S.A., Barcelona, Spain). Those cells were used in subsequent experiments.
Cell Lines and Cell infection
Human BC cell lines (MCF-7 and MDA-MB-231) were purchased from the Cell Bank of Chinese Academy of Sciences (Shanghai, China). The cells were cultured in DMEM (Thermo Fisher Scientific) containing 10% FBS at 37°C with 5% CO2 in humidified gas conditions. BC cells (MCF-7 and MDA-MB-231) were incubated in 1 mL complete culture medium with the L. monocytogenes strain for 1 h while control BC cells were incubated with complete culture medium only. After infection, cells were centrifuged at 900 rpm/min for 5 min, and extracellular bacteria were removed by washing with DPBS twice.
Cell viability test
To test the cell viability after bacteria invasion, we cocultured tumor cells with CFSE-labeled L. monocytogenes strains and added the bacteria-invaded tumor cells (1.2×104 cells/well) to a 24 well-plate in colony forming medium without Y27632(Sigma). After eight hours, tumors cells both in the supernatant and adhering on the plate were stained with Annexin V (Biolegend, #640912) following manufacturer’s instructions. Cells were then analyzed by FACS using BC CytoFLEX LX(Beckman) and quantified by FlowJo software (Tree Star, Inc., Ashland, OR).
MTT Assay
First, the cell suspension was prepared by trypsin digestion of logarithmic phase cells, aborted by serum digestion, pipetting until the cells were suspended, and the cell suspension was centrifuged at 1000 rpm/min for 5 min, the supernatant was discarded, and the cell suspension was made by resuspending the precipitate. After the cell suspension was prepared, the cells were inoculated and implanted into 96-well plates (Corning Life Sciences), with one column (6 multiple wells) for each experimental group, and the amount of cells implanted in each well was 3 × 103 cells/well. Place the inoculated plates in an incubator and incubate to the appropriate cell density. Remove the inoculated plates from the incubator, add 10 μL of MTT (5 mg/mL) to each well, incubate for 4 h and then terminate the incubation, and add 150 μl of dimethyl sulfoxide to dissolve the precipitate. The absorbance was then measured at 560 nm using a microplate reader, and the background value of 650nm was subtracted. Cell proliferation is represented as a percentage of the value obtained for cells incubated with the vehicle (DMSO). The experiment was performed independently in triplicate.
Soft Agar Assay
MCF-7 and MDA-MB-231 cells were divided into three groups: NC group, L.moco group and L.mono+Clarithromycin group. After 48 h of transfection, the cells were harvested, and the soft agar assay was performed to assess the ability of cancer cells to undergo anchorage-independent growth. Briefly, 1 ml culture media with 0.8% agar solution was plated in six-well plates, solidified, and then overlaid with 1 ml culture medium containing 0.3% agar solution and 2000 cells, and the cells were allowed to grow. To prevent drying, 0.5 ml culture medium was added to each well. After 14 days, 0.5 ml iodonitrotetrazolium violet (INT, 0.5 mg/ml in PBS) was added to stain the cells overnight. Cell Colonies were counted from nine high powered fields. Results are reported as means ±SEM from at least three independent experiment, each containing duplicate measurements. Representative images (20x) were taken using an EVOS 5000 Imaging System (Thermo Fisher Scientific).
Transwell Assay
Cell invasion assay was performed on 6-well Trans well plate (polycarbonate membrane with 8 µm pore size, Costar, USA) precoated with 10 µg/mL Matrigel (SIGMA, USA). 5 × 105 MCF-7 or MDA-MB-231 cells suspension was inoculated into the upper chamber with serum-free L-15 medium, and L-15 medium containing 10% FBS was added to the lower chamber, then placed at 37°C, 5% CO2 incubator. After 24 h, the Trans well chamber was taken out and washed with PBS. The cells on the upper layer of the membrane were wiped off with a cotton swab, and fixed at lower layer with 4% paraformaldehyde for 10 min, then stained with 0.25% crystal violet. they were then photographed using fluorescence microscopy (NIKON Eclipse 80i, Ku, Tokyo, Japan). We counted 8 fields randomly to determine the number of invaded cells. The number of invading cells was analyzed using image j software, and the data from all three independent replicates were analyzed for statistical significance and plotted in a bar graph.
Fluid Shear Stress Model
The microfluidic circulation system with peristaltic pump in the study was assembled according to published literature (Regmi et al., 2017). The microfluidic circulation system with a peristaltic pump (SHENCHEN #LabS3) was used to control the flow rate of the system. Our microfluidic system is based on 4 rollers (Figure 4a), which pumps fluid in a pulsatile manner, mimicking blood flow in the human body. DMEM or RPMI 1640 (PS, Gibco, USA) containing 10% FBS, 1% penicillin and streptomycin, pH 7.4 was used as the fluid component of the circulation system. The fluid mechanical contraction force encountered by cells in circulation can be calculated using the Poiseuille equation, τ = 4Qη/πR3, where Q is the flow rate in ml/sec, η is the dynamic viscosity of the fluid, equivalent to 0.012dynes.sec/cm2, and R is the inner radius of the circulation tube (R2). Specifically, the shear stress is about 14 dynes/cm2 when Q is equal to 0.859 ml/60s and about 20 dynes/cm2 when Q is equal to 1.227 ml/60s. We have tested various cell densities and found that 2×105 cells/ml was the best condition. This concentration allows the collection of sufficient cells for analysis while they can circulate in the system without conjugation or precipitation. The length of the silica-based cycle is 1.5 m; R1 has a size of 0.5 mm, while R2 has a fixed size of 0.25 mm (Figure 4a). The tubes were sterilized before applying to the model by washing with 70% ethanol (4 ml) and then rinsing with high-pressure distilled water (4 ml). Before introducing the cells into the microfluidic system, the morphology of the cells was checked to ensure that only healthy cells were used. Cells were digested by trypsin and suspended in fresh DMEM at a density of 2 × 105/ml. 1 ml of cell suspension (2 × 105 cells) was injected into the circulation system and treated with fluid shear stress at different times at 37°C in a 5% CO2 incubator. 100μl of cell suspension was then collected at each indicated time points.
Immunofluorescence (IF)
For frozen sections, tissues were fixed in 4% paraformaldehyde (BBI Life Sciences #E672002-0500) for 2 hours and then soaked in 30% sucrose to infiltrate overnight. The fixed tissues were embedded in O.C.T. (Tissue-Tek) compound and frozen at -80°C. For formalin-fixed paraffin-embedded tissues (FFPE), tissues were fixed overnight in 4% paraformaldehyde at 4°C. Antigen retrieval was carried out by boiling in slightly citrate buffer (10 mM Sodium Citrate, 0.05% Tween 20, pH 6.0) in a microwave oven at medium-low power for 15 minutes. The samples were blocked with TBS + 2% BSA + 5% donkey serum + 0.1% Triton X-100 in a humid chamber at room temperature for 1 h. Subsequently, samples were incubated with primary antibodies: Mouse Anti-Gram Positive Bacteria antibody (1:100, Abcam, ab20344), overnight at 4°C followed by staining with fluorophore-conjugated secondary antibodies: Alexa Fluor 488-phalloidin (1:500, Invitrogen #A12379) in blocking buffer for 1 h at room temperature protected from light. Slides were then stained with DAPI (1ug/mL (1x), sigma) for 5min, and mounted with Antifade Mounting Medium (Beyotime #P0126). Fluorescence microscope was used for observation and acquisition of fluorescence images.
Statistical Analysis
The enrichment levels of L. monocytogenes in breast cancer tissues and normal paracancerous control tissues were analyzed by unpaired t test (Fig.1b, c) (Fig.4c). The chi-square and t tests were performed to assess the relationship between L. monocytogenes enrichment levels and clinicopathological features (Table 1). The ANOVA summary was performed to assess the enrichment of L. monocytogenes in different tumor grades, lymph node metastasis status and various molecular subtypes of breast cancer (Fig.2a, b, c) (Fig.3c, e, g, i) (Fig.4b), Overall survival and disease-free survival were analyzed according to the Log-rank (Mantel-Cox) test method (Fig.2e, f). Univariate analysis was applied by log-rank test. Cox multivariate proportional hazards model was applied to analyze the survival variables (Table 2). P values less than 0.05 were considered statistically significant. All statistical analysis was performed using SPSS version 27.0. and Graph-Pad Prism version 9 Software. The results are expressed as the mean±s.e.m. Immunohistochemical staining intensity was calculated as a percentage of stained area by ImageJ software using cytoplasmic staining statistics, and histochemistry score (H-Score) were calculated using the following formula: score= strongly positive (+++) area percentage*3+ moderately positive (++) area percentage*2+ weakly positive (+) area percentage*1+negative (-) area percentage*0.