Materials
For ANXA5 protein production and purification, the plasmid encoding ANXA5, pET-30 Ek/LIC/ANX, was previously constructed in this laboratory [25]. Sodium hydroxide (NaOH), sodium chloride (NaCl), tryptone, kanamycin, yeast extract, isopropyl-beta-D-thiogalactopyranoside (IPTG), N- p-tosyl-L-phenylalanine chloromethyl ketone (TPCK), phenylmethylsulfonyl fluoride (PMSF), β-mercaptoethanol, and sodium phosphate dibasic (Na₂HPO₄) were from Sigma Aldrich (St. Louis, MO). All cell lines and cell media were from American Type Culture Collection (ATCC, Manassas, VA, USA). Waymouth's MB 752/1 medium), was from Gibco (Thermo Fisher, Waltham, MA). Antibiotic-antimitotic (10,000 IU Penicillin, 10,000 µg/ml Streptomycin, and 25 µg/ml Amphotericin B) was from Corning (Kennebunk, MA, USA). Vascular cell basal medium and endothelial cell growth kit BBE (0.2% bovine brain extract, 5 ng/ml EGF, 10 mM L-glutamine, 0.75 Units/ml heparin sulfate, 1 µg/ml hydrocortisone, 50 µg/ml ascorbic acid, 2% FBS) was from ATCC. Trypsin/EDTA was from Thermo Fisher Scientific.Antibiotic-antimitotic (10,000 IU Penicillin, 10,000 µg/ml Streptomycin, and 25 µg/ml Amphotericin B) was from Corning (Kennebunk, MA, USA). Endothelial cell growth kit BBE (0.2% bovine brain extract, 5 ng/ml EGF, 10 mM L-glutamine, 0.75 Units/ml heparin sulfate, 1 µg/ml hydrocortisone, 50 µg/ml ascorbic acid, 2% FBS) was from ATCC. Trypsin/EDTA was from Thermo Fisher Scientific. HRV 3C protease was from Acro Biosystems (Newark, DE). The HisTrap chromatography column (5 ml) was from Cytiva (Marlborough, MA). The 12–14 kDa regenerated cellulose dialysis membrane was from Fisher Scientific (Pittsburgh, PA). Laemmli sample buffer, ladder (marker), 4–20% mini-protean TGX stain-free pre-casted polyacrylate gels, Bio-Rad 10x Tris-glycine-SDS buffer, and Bradford dye reagent were from Bio-Rad Laboratories (Hercules, CA). Imperial™ protein stain was from Thermo Scientific (Waltham, MA). For conjugation of ANXA5 to SWCNTs, purified and freeze dried (6,5) CoMoCAT SG65i SWCNTs were provided by Chasm Advanced Material Company (Norman, Oklahoma), with a tubular carbon purity of ≥ 97% as determined by TGA, Raman Q factor ≥ 0.97, an average length of 1 µm, an outer diameter of 0.78 ± 2 nm, and a (6,5) chirality composition of ≥ 40%, as determined by near-infrared fluorescence spectroscopy (NIRF). DSPE-PEG-mal (3.4 kDa) was from Creative PEGWorks (Winston Salem, NC). Spectra-Por® dialysis membranes (2 and 100 kDa) from Spectrum Laboratories, Inc. (Rancho Dominguez, CA). Bradford protein reagent was from Bio-Rad (Hercules, CA). L-cysteine amino acid was from Sigma Aldrich. For cell culture and in vitro assays, all cell lines and cell media were from American Type Culture Collection (ATCC, Manassas, VA, USA). For in vivo studies, BALB/cJ mice were from Jackson Laboratory (Bar Harbor, ME). ELISA kits, and flow cytometry staining antibodies were from Biolegend (San Diego, CA). Anti-PD-1 was from Bio X Cell (Lebanon, NH).
Annexin A5 production and purification
Recombinant ANXA5 was produced as previously described [26]. In brief, BL21(DE3) Escherichia coli harboring the plasmid containing pET-30 Ek/LIC/ANXA5 were initially inoculated and grown in TB medium with kanamycin (35 µg/ml) and then induced to produce ANXA5. The bacteria were collected and sonicated. The debris-free supernatant from cell lysate was loaded into a nickel HisTrap column. After washing, an endotoxin removal step was added using a 1% Triton X-100 wash [27], After another wash, ANXA5 protein (with an N-terminal six histidine tail) was eluted. After dialysis against sodium phosphate buffer, the (His)6-tagged protein was cleaved with the HRV 3C protease. Final column purification was performed by loading cleaved protein into the affinity column and collecting the first flow-through with ANXA5 without the (His)6 tag. The protein solution was dialyzed against a 20 mM sodium phosphate buffer containing 100 mM NaCl (pH 7.4) a final time before being aliquoted in cryogenic vials and flash-frozen in liquid nitrogen. Aliquots were placed in a -80°C freezer for long-term storage. The purified protein was quantified using the Bradford assay and analyzed with SDS-PAGE electrophoresis for purity.
Conjugation of SWCNTs to annexin A5
The conjugation was performed using a DSPE-PEG-maleimide linker (3.4 kD) as previously described [25]. Briefly, SWCNTs (6 mg) were added to 5 ml of a 1% sodium dodecyl sulfate (SDS) solution and sonicated for 1 h at 19.8 W of power (E = 35,640 J) (VirSonic 100 ultrasonic cell disruptor, VirTis). Sonicated SWCNTs were centrifuged in an ultracentrifuge (16,000 g) for 1 h. The DSPE-PEG-MAL linker (1.5 mg) dissolved in 1% SDS solution (1 mL) was added to 5 ml of the SWCNT suspension and then mixed at room temperature for 30 min with gentle shaking. The suspension was dialyzed in a 2-kDa dialysis membrane for 8 h against 3 liters of deionized water. The dialysate was changed after the first 4 h. SWCNT-linker suspension (2 ml) was mixed with the concentrated ANXA5 (1 ml of 5 mg/ml totaling 5 mg of ANXA5) at room temperature for 2 h with gentle shaking. Any unreacted linker sites were blocked with L-cysteine, which was added to the suspension and allowed to react for 1 h at room temperature with gentle shaking. The suspension was then dialyzed using a 100 kDa dialysis membrane to remove any unbound ANXA5 or L-cysteine for 8 h against 3 L of 20 mM sodium phosphate buffer (pH 7.4) with a dialysate change after 4 h. The final suspension was centrifuged at 16,000 g for 1 h to remove any aggregates. The conjugate was stored in a glass vial at 4oC until use. Conjugate was used within 1 week of the end of conjugation.
Cell culture
EMT6 murine breast carcinoma cells were cultivated with Waymouth's MB 752/1 medium supplemented with 2 mM glutamine, 15% FBS, and 1% antibiotic-antimitotic (10,000 IU penicillin, 10,000 µg/ml streptomycin, and 25 µg/ml amphotericin B). Human umbilical vein endothelial cells (HUVEC) were cultured in vascular cell basal medium supplemented with endothelial cell growth kit BBE (0.2% bovine brain extract, 5 ng/ml EGF, 10 mM L-glutamine, 0.75 Units/ml heparin sulfate, 1 µg/ml hydrocortisone, 50 µg/ml ascorbic acid, and 2% FBS) and 1% antibiotic-antimycotic. Cells were passaged using 0.25% (w/v) trypsin in 0.53 mM EDTA before reaching 85% confluency. All cell lines were cultured under a 5% CO2-supplemented atmosphere at 37°C. The medium was refreshed every 48 h. During assays, EMT6 cancer cell cultures were grown to less than 75% confluence, and HUVEC were grown to confluency for inhibition of PS expression upon confluency.
In vitro studies
The cells that were previously grown in T-75 flasks were seeded at 2⋅105 into sterile surface-treated 24-well plates. At 24 h after seeding, cell media was aspirated, and fresh media enriched with 6 mg/L SWCNT-ANXA5 suspension and 2 mM of Ca2+ (CaCl2) was added to the wells. Incubation was performed for 2 h at 37 ºC. The wells were washed three times with sterile phosphate buffer saline (PBS) to remove unbound SWCNT-ANXA5. Each group was evaluated at least in triplicate. Different controls were studied to guarantee the specificity of the assay.
For PTT treatment, each well subjected to the laser treatment was irradiated for different time periods at 980 nm at a power density of 1 W/cm2 using a Diodevet-50 NIR laser (B&W Tek Inc., Newark, DE). The irradiation was always performed by having the plate sitting on top of a platform and aiming the optical fiber at the bottom of the plate, positioned a few centimeters away from the bottom to obtain the desired size beam. Each well was carefully adjusted to be centered with the laser beam. The size of the beam was adjusted using a laser sensitive paper (Zap-it® paper) which burns when exposed to a laser beam. The attenuation of power from the fiber and plates was determined by a power meter (Ophir Optronics Ltd., Israel). The power meter probe was placed on top of a microtiter plate (without the lid on), and the power was determined to reach a power level of 1 W/m2. The irradiation was performed either at room temperature or inside an incubator at 37°C to mimic physiological temperatures.
The cell viability after PTT was determined by using the Alamar Blue assay. The cells were incubated with the reagent for 2–4 h at 37 ºC, until coloration of the media in untreated control wells turned pink. Changes in fluorescence were then quantified with a microplate reader (excitation wavelength at 530 nm and emission at 590 nm). The viability was determined by normalizing the results to the average fluorescence of the untreated control wells, which is set to 100%, giving each well the relative viability. The average background fluorescence (no cell wells) was also subtracted from sample fluorescence. Temperature measurement of cell media bulk temperature was performed with a type J thermocouple inserted to the bottom of the well.
Animal handling procedures
All animal studies were performed following the protocols approved by the Institutional Animal Care and Use Committee (IACUC) of the University of Oklahoma and performed by staff with proper training. Animals were housed in a pathogen-free facility at the University of Oklahoma and monitored daily.
In vivo studies
For tumor induction, six-week-old female BALB/cJ mice were injected with 1x106 EMT6 cells suspended in 100 µl of PBS using a 30-gauge needle. The injection was performed subcutaneously in the fourth mammary fat pad, close to the nipple, which characterizes an orthotopic tumor. Mice weight and tumor volumes were measured every 3–5 days during each study. Tumor volumes were measured using a caliper, and volume (V) was determined through the modified ellipsoid formula V = (1/2) ⋅ (L⋅W2), where length (L) is the longest diameter of the tumor and the perpendicular diameter is the width (W). For all the studies, mouse health was assessed every 3–5 days for signs of distress. Mice were euthanized when the tumor size was greater than 15 mm in any of the directions of measurement or when the mice were sick, characterized by dehydration, weight loss greater than 20%, recumbent posture, breathing difficulty, or loss of leg function due to tumor proximity. Mice were fed a standard chow diet. During photothermal irradiation of tumors with a NIR laser light, mice were anesthetized with 3% isoflurane and 97% oxygen using a nose cone. Treatments were performed when tumors reached a size of ~ 5 mm (approximately 60 mm3). SWCNT-ANXA5 injections were performed at a 1.2 mg/kg dose of SWCNT.
To evaluate the cytokine release related to tumor surface temperature EMT6-tumor-bearing mice were injected intratumorally (i.t.) with SWCNT-ANXA5 when the tumors were around 5 mm in diameter (~ 60 mm3). The tumors were treated by a 980-nm NIR laser at 1 W/cm2. The tumor surface temperature was monitored during the irradiation by a thermal camera (FLIR E5-XT). Irradiation ceased immediately after the tumor surface reached the temperature assigned to the groups of 45, 50, 55, or 60°C. Mice were euthanized either 1 or 7 days after PTT for blood collection (respectively 24 h and 168 h). The concentration of four pro-inflammatory cytokines was measured in the serum by ELISA. The control group was i.t. injected with SWCNT-ANXA5 but not treated with PTT.
To assess the effects of SWCNT-ANXA5-mediated PTT at 45°C in combination with anti-PD-1, a long-term survival test was performed. Mice were inoculated with EMT6 tumors on day 0. On day 7, when tumors were around 3 mm in diameter, treatment started for the assigned groups with an intraperitoneal injection of anti-PD-1 checkpoint inhibitor at 10 mg/kg. The same injection was performed two more times on days 10 and 15. On day 11, mice were injected i.t. with SWCNT-ANXA5 when the tumors were around 5 mm in diameter (~ 60 mm3) and treated with PTT. The tumors were treated by 980-nm NIR laser at 1 W/cm2. The tumor surface temperature was monitored during the irradiation by a thermal camera (FLIR e-5). Irradiation was ceased immediately after the tumor surface temperature reached 45°C. Mice health was monitored for 100 days after tumor induction, when the study was terminated. For the mechanistic analysis of the combination therapy, mice were treated following the same protocol for the long-term survival test, but the mice were euthanized by CO2 asphyxiation 14 days after PTT, when the spleens were harvested for quantification of antitumoral immune effector cells.
To improve the efficiency of the PTT at 45°C, a tumor control study was performed with prolonged irradiation times. Tumor-bearing mice were injected i.t. with SWCNT-ANXA5 when the tumors were around ~ 100 mm3. The tumors were treated by a 980-nm NIR laser at 1 W/cm2. Tumors were irradiated until the surface temperature reached 45°C and then held the temperature at 45°C ± 3°C by repeatedly turning the laser off and on. The cycles of turning off and on were repeated for the total time of the irradiation session of 0, 1, 2 and 5 min. After irradiation sessions, tumor volumes and body weights were monitored daily. The experiment was finalized 15 days after PTT when the remaining mice were euthanized.
To analyze the combination therapy of anti-PD-1 and PTT at 45°C for 5 min, tumor-bearing mice were treated with three injections of anti-PD-1 (intraperitoneal injection on days 7,10, and 15 at 10 mg/kg), and the tumors were treated by 980 nm NIR laser at 1 W/cm2 after i.t. injection of SWCNT-ANXA5 (1.2 mg/kg) on day 11. The cycles of turning off and on were repeated for the total time of the irradiation session of 5 min. The group that received irradiation for 5 min was compared to an untreated control group, and another group treated with anti-PD-1 and PTT, but the irradiation stopped immediately when the tumor surface temperature reached 45°C.
Ex vivo SWCNT detection for biodistribution analysis
BALBc/J mice were inoculated with EMT6 tumors and were injected i.t. with SWCNT-ANXA5 (1.2 mg/kg of SWCNTs) when the tumors were around 5 mm in diameter (~ 60 mm3). The tumors were treated by a 980-nm NIR laser at 1 W/cm2. Tumors were irradiated until the surface temperature reached 45°C. Mice were euthanized by CO2 asphyxiation 1 week after PTT. Major organs were harvested and weighed. Organs were frozen and stored in a -80°C freezer. Tissue lysates for analysis of SWCNT concentration were prepared according to the protocol from Liu et al.[28]. Briefly, after thawing samples, organs were individually ground in a tissue grinder added to lysing buffer composed of 1% SDS, 1% Triton X-100, 10 nM DTT (dithiothreitol), and 40 mM tris-acetate-EDTA buffer to complete volume of 10 ml. Tissue was digested overnight in an incubator at 70°C. Each sample was sonicated for 1 h to resuspend SWCNTs from digested tissue. Samples were analyzed using intrinsic SWCNT fluorescence by single excitation fluorescence measurement using an NS MiniTracer (Applied Nanofluorescence, Houston, TX).
Statistical analysis
The statistical significance of in vitro results was assessed using an unpaired t-test with Welch’s correction for assumed unequal variances for experiments with only two groups. One-way ANOVA with Dunnett’s multiple comparisons was used for tests with more than two groups, comparing treated groups to the control group. The statistical significance of cytokine levels in serum, tumor volumes, and splenic cell counts in the in vivo studies was assessed by one-way ANOVA with Dunnett’s multiple comparisons comparing treated groups to the control group. In survival experiments with only three groups, one-way ANOVA with Tukey’s multiple comparisons comparing every pair of groups was used to assess statistical analysis between tumor volumes. The Mantel-Haenszel log-rank test determined the statistical significance of survival curves by comparing treated groups to the untreated control. All analyses were carried out in GraphPad Prism 8 software.