1.Paux E, Sourdille P, Salse J, Saintenac C, Choulet F, Leroy P, Korol A, Michalak M, Kianian S, Spielmeyer W: et al: A physical map of the 1-gigabase bread wheat chromosome 3B. Science. (New York, NY) 2008, 322(5898):101–104.
2.Singh RP, Singh PK, Rutkoski J, Hodson DP, He X, Jorgensen LN, Hovmoller MS, Huerta-Espino J: Disease Impact on Wheat Yield Potential and Prospects of Genetic Control. Annual review of phytopathology. 2016, 54:303–322.
3.Gao FM, Ma DY, Yin GH, Rasheed A, Dong Y, Xiao YG, Xia XC, Wu XX, He ZH: Genetic Progress in Grain Yield and Physiological Traits in Chinese Wheat Cultivars of Southern Yellow and Huai Valley since 1950. Crop Science. 2017, 57(2):760–773.
4.Zhang GM, Ye JL, Jia YL, Zhang LL, Song XY: iTRAQ-Based proteomics analyses of sterile/fertile anthers from a thermo-sensitive cytoplasmic male-sterile wheat with Aegilops kotschyi cytoplasm. International journal of molecular sciences. 2018, 19(5):1344–1355.
5.Chen L, Liu YG: Male sterility and fertility restoration in crops. Annual review of plant biology.2014, 65:579–606.
6.Murai K, Tsunewaki K: Photoperiod-sensitive cytoplasmic male sterility in wheat with Aegilops crassa cytoplasm. Euphytica. 1993, 67(1):41–48.
7.Saraike T, Shitsukawa N, Yamamoto Y, Hagita H, Iwasaki Y, Takumi S, Murai K: Identification of a protein kinase gene associated with pistillody, homeotic transformation of stamens into pistil-like structures, in alloplasmic wheat. Planta 2007, 227(1):211–221. Zhu Y, Saraike T, Yamamoto Y, Hagita H, Takumi S, Murai K: orf260cra, a novel mitochondrial gene, is associated with the homeotic transformation of stamens into pistil-like structures (pistillody) in alloplasmic wheat. Plant & cell physiology. 2008, 49(11):1723–1733.
8.Coen ES, Meyerowitz EM: The war of the whorls: genetic interactions controlling flower development. Nature. 1991, 353(6339):31–37.
9.Pelaz S, Ditta GS, Baumann E, Wisman E, Yanofsky MF: B and C floral organ identity functions require SEPALLATA MADS-box genes. Nature. 2000, 405(6783):200–203.
10.Theissen G: Development of floral organ identity: stories from the MADS house. Current opinion in plant biology.2001, 4(1):75–85.
11.Hama E, Takumi S, Ogihara Y, Murai K: Pistillody is caused by alterations to the class-B MADS-box gene expression pattern in alloplasmic wheats. Planta. 2004, 218(5):712–720.
12 Murai K, Takumi S, Koga H, Ogihara Y: Pistillody, homeotic transformation of stamens into pistil-like structures, caused by nuclear-cytoplasm interaction in wheat. Plant journal. 2002, 29(2):169–181.
13.Goto K, Meyerowitz EM: Function and regulation of the Arabidopsis floral homeotic gene PISTILLATA. Genes & development. 1994, 8(13):1548–1560.
14.Trobner W, Ramirez L, Motte P, Hue I, Huijser P, Lonnig WE, Saedler H, Sommer H, Schwarz-Sommer Z: GLOBOSA: a homeotic gene which interacts with DEFICIENS in the control of Antirrhinum floral organogenesis. The EMBO journal. 1992, 11(13):4693–4704.
15.Ye J, Fang L, Zheng H, Zhang Y, Chen J, Zhang Z, Wang J, Li S, Li R, Bolund L et al: WEGO: a web tool for plotting GO annotations. Nucleic acids research. 2006, 34(Web Server issue):W293-W297.
16.Li J, Ding X, Han S, He T, Zhang H, Yang L, Yang S, Gai J: Differential proteomics analysis to identify proteins and pathways associated with male sterility of soybean using iTRAQ-based strategy. Journal of proteomics. 2016, 138:72–82.
17.Liu ZH, Shi XY, Li S, Zhang LL, Song XY: Oxidative stress and aberrant programmed cell death are associated with pollen abortion in isonuclear alloplasmic male-sterile wheatOxidative Stress and Aberrant Programmed Cell Death Are Associated With Pollen Abortion in Isonuclear Alloplasmic Male-Sterile Wheat. Frontiers in plant science. 2018, 9:595.
18.Geng XX, Ye JL, Yang XT, Li S, Zhang LL, Song XY: Identification of Proteins Involved in Carbohydrate Metabolism and Energy Metabolism Pathways and Their Regulation of Cytoplasmic Male Sterility in Wheat. International journal of molecular sciences. 2018, 19(2): 595.
19.Song XY, Hu YG, Ma LJ, Li HB, He BRSong.Xiyue, Yingang H, lingjian M: Changes of material content in panicles and leaves of YS type thermo-sensitive male sterile wheat line A3314 during transfer from sterility to fertility. Journal of Northwest A &F University. 2009, 29(05):818–82237(8):81–86.
20.Song XL, Sun XZ, Wang HGXianliang S, Xuezhen S, honggang W: Biochemical changes in anthers of”Dong A” genetic male sterile lines of cotton. Acta Botanica Boreali-Occidentalia Sinica. 2004, 24(2):243–247.
21.Tang XJ, Peng C, Zhang J, Cai Y, You XM, Kong F, Yan HG, Wang GX, Wang L, Jin J et al: ADP-glucose pyrophosphorylase large subunit 2 is essential for storage substance accumulation and subunit interactions in rice endosperm. Plant science.: an international journal of experimental plant biology 2016, 249:70–83.
22.Kang GZ, Wang YH, Liu C, Shen BQ, Zheng BB, Feng W, Guo TC: Difference in AGPase subunits could be associated with starch accumulation in grains between two wheat cultivars. Plant gGrowth rRegulation. 2010, 61(1):61–66.
23.Cheng C, Hu J, Zhi Y, Su JJ, Zhang XK, Huang BQ: Cloning and characterization of ADP-glucose pyrophosphorylase small subunit gene in Cyperus esculentus (yellow nutsedge). Genetics and molecular research.: GMR 2015, 14(4):18302–18314.
24.Li J, Pandeya D, Jo YD, Liu WY, Kang BC: Reduced activity of ATP synthase in mitochondria causes cytoplasmic male sterility in chili pepper. Planta. 2013, 237(4):1097–1109.
25.Tao X, Jilin L: Cytochrome Oxidase Activity and ATP Content of Male-Sterile Cytoplasm in Maize (Zea mays L.). Journal of north China agriculture. 1994, 9(4):33–37.
26.Jack T, Brockman LL, Meyerowitz EM: The homeotic gene APETALA3 of Arabidopsis thaliana encodes a MADS box and is expressed in petals and stamens. Cell. 1992, 68(4):683–697.
27.Sommer H, Beltran JP, Huijser P, Pape H, Lonnig WE, Saedler H, Schwarz-Sommer Z: Deficiens, a homeotic gene involved in the control of flower morphogenesis in Antirrhinum majus: the protein shows homology to transcription factors. The EMBO journal. 1990, 9(3):605–613.
28.McGonigle B, Bouhidel K, Irish VF: Nuclear localization of the Arabidopsis APETALA3 and PISTILLATA homeotic gene products depends on their simultaneous expression. Genes & development. 1996, 10(14):1812–1821.
.E H, S T, Y O, K M: Pistillody is caused by alterations to the class-B MADS-box gene expression pattern in alloplasmic wheats. Planta 2004, 218(5):712–720.
29.Mizzotti C, Mendes MA, Caporali E, Schnittger A, Kater MM, Battaglia R, Colombo L: The MADS box genes SEEDSTICK and ARABIDOPSIS Bsister play a maternal role in fertilization and seed development. The Plant plant journal for cell and molecular biology. 2012, 70(3):409–420.
30.Kang HG, Jeon JS, Lee S, An G: Identification of class B and class C floral organ identity genes from rice plants. Plant molecular biology. 1998, 38(6):1021–1029.
31.Becker A, Theissen G: The major clades of MADS-box genes and their role in the development and evolution of flowering plants. Molecular phylogenetics and evolution. 2003, 29(3):464–489.
32.Paolacci AR, Tanzarella OA, Porceddu E, Varotto S, Ciaffi M: Molecular and phylogenetic analysis of MADS-box genes of MIKC type and chromosome location of SEP-like genes in wheat (Triticum aestivum L.). Molecular genetics and genomics.: MGG 2007, 278(6):689–708.
33.Pinyopich A, Ditta GS, Savidge B, Liljegren SJ, Baumann E, Wisman E, Yanofsky MF: Assessing the redundancy of MADS-box genes during carpel and ovule development. Nature. 2003, 424(6944):85–88.
34.Zhou LL, Song GQ, Li HB, Hu YG, He BRZhou LL, Song GQ, Hong-Yan LI, Yin-Gang HU, Bei-Ru, He: A MADS-Box transcription factor related to fertility conversion in male sterile wheat linesA MADS-Box Transcription Factor Related to Fertility Conversion in Male Sterile Wheat Lines. Acta Agronomica Sinica. 2008, 34(4):598–604.
35.Sun QX, Qu JP, Yu Y, Yang ZJ, Wei SH, Wu YL, Yang J, Peng ZS: TaEPFL1, an EPIDERMAL PATTERNING FACTOR-LIKE (EPFL) secreted peptide gene, is required for stamen development in wheat. Genetica. 2019, 147(2):121–130.
36.Liu ZH, Shi XY, Li S, Ye JL, Meng LY, Yan PJ, Zhang LL, Song XY: Tapetal programmed cell death, antioxidant response and oxidative stress in wheat anthers associated with D2-type cytoplasmic male-sterilityTapetal Programmed Cell Death, Antioxidant Response and Oxidative Stress in Wheat Anthers Associated with D 2 -type Cytoplasmic Male-Sterility. Scientia Agricultura Sinica. 2017, 50(21):4071–4086.
37 Yao M, Ye JL, Yang ZQ, Duan Y, Meng LY, Yan PJ, Liu ZH, Zhang LL, Song XY: Abortion feature and fertility restoration of five kinds of cytoplasmic male sterile wheat lines. J Triticeae Crops. 2015, 35(12):1676–1684.
38.Wang SP, Zhang GS, Song QL, Zhang Y, Li Z, Guo J, Niu N, Ma SC, Wang JW: Abnormal development of tapetum and microspores induced by chemical hybridization agent SQ–1 in wheat. PloS one One. 2015, 10(3):e0119557.
39.Roberts A, Pimentel H, Trapnell C, Pachter L: Identification of novel transcripts in annotated genomes using RNA-Seq. Bioinformatics. (Oxford, England) 2011, 27(17):2325–2329.
40.Zararsiz G, Cosgun E: Introduction to statistical methods for microRNA analysis. Methods in molecular biology. (Clifton, NJ) 2014, 1107:129–155.
41.Wang LK, Feng ZX, Wang X, Wang XW, Zhang XT: DEGseq: an R package for identifying differentially expressed genes from RNA-seq data. Bioinformatics. (Oxford, England) 2010, 26(1):136–138.
42.Young MD, Wakefield MJ, Smyth GK, Oshlack A: Gene ontology analysis for RNA-seq: accounting for selection bias. Genome biology. 2010, 11(2):R14.
43.Benjamini Y, Hochberg Y: Controlling the false discovery rate - a practical and powerful approach to multiple testing. Controlling The False Discovery Rate - A Practical And Powerful Approach To Multiple Testing. Journal of the rRoyal sStatistical sSociety. 1995, 57(1):289–300.
44.Kanehisa M, Araki M, Goto S, Hattori M, Hirakawa M, Itoh M, Katayama T, Kawashima S, Okuda S, Tokimatsu T et al: KEGG for linking genomes to life and the environment. Nucleic acids research. 2008, 36(Database issue):D480–484.
.Ba QS, Zhang GS, Wang JS, Che HX, Liu HZ, Niu N, Ma SC, Wang JW: Relationship between metabolism of reactive oxygen species and chemically induced male sterility in wheat (Triticum aestivum L.). Canadian Journal of Plant Science 2013, 93(4):675–681.
45.Jacoby RP, Millar AH, Taylor NL: Wheat mitochondrial proteomes provide new links between antioxidant defense and plant salinity tolerance. Journal of proteome research. 2010, 9(12):6595–6604.
46.Ba QS, Zhang GS, Wang JS, Che HX, Liu HZ, Niu N, Ma SC, Wang JW: Relationship between metabolism of reactive oxygen species and chemically induced male sterility in wheat (Triticum aestivum L.). Canadian Journal of Plant Science. 2013, 93(4):675–681.
47. Tamura K, Stecher G, Peterson D, Filipski A, Kumar S: MEGA6: Molecular Evolutionary Genetics Analysis version 6.0. Molecular biology and evolution. 2013, 30(12):2725–2729.
48.Lim S, Yoon H, Ryu S, Jung J, Lee M, Kim D: A comparative evaluation of radiation-induced DNA damage using real-time PCR: influence of base composition. Radiation research. 2006, 165(4):430–437.