2.1 Plasma source
The MidiPLexc (Fig. 1)(39) is a microwave-driven plasma source and an extension of the MiniMIP (40). In contrast to the MiniMIP, this plasma source can be operated with compressed air instead of argon gas, which leads to lower operation costs. In addition, it is possible to treat different amounts of liquids with the microwave-induced plasma gas, because of its integrated bottle adapter (39) (41). The MidiPLexc was operated with compressed air as working gas and a forward power of 80 W and a reverse power of 20 W. After 30 min running time to ensure a stable gas flow and effluent, the generation of plasma-treated water (PTW) was started.
2.2 Generation of the PTW by the MidiPLexc
A 1 l glass bottle was filled with 10 ml of deionized water (DW) and integrated into the bottle adapter of the MidiPLexc for the production of the PTW. In our experiments, we used the terms pre- and post-treatment times. The pre-treatment defines the contact time of the DW with the plasma gas and the post-treatment is equivalent to the contact time of the PTW with the biofilm. For the biological investigations, three different pre-treatment times (100 s, 300 s, 900 s) and three different post-treatment times (1 min, 3 min, 5 min) for each pretreatment time were used. Each post-treatment time for the biofilms was performed in triplicates per experimental day. Each test was performed in four biological replicates. This yielded in n = 12 for each post-treatment time.
2.3 Bacterial strain and growth conditions
L. monocytogenes, (ATCC 15313) was used for cultivation because of its wellknown ability to form biofilms (42, 43). In the beginning, 1 l Brain Heart Infusion (BHI) broth (Roth, Karlsruhe, Germany) was prepared, autoclaved, and its pH value was adjusted to pH 6 by adding 10 M hydrochloric acid (HCl). This was adapted according to the results of a previous study (44). Additionally, the BHI medium was pumped through a 0.2 µm polyether sulfone (PES) filter system (VWR, Darmstadt, Germany) using a vacuum pump and was sterile filtrated. A colony was removed from an inoculated agar plate using a 10 µl inoculation loop, subsequently suspended in 50 ml BHI medium, and incubated for 24 h at 30 °C without shaking. On the next day, 1 ml of the suspension was diluted with BHI broth and adjusted to an optical density (OD) at 600 nm of 0.100 by using 10 mm diameter polystyrene cuvettes in a UV-3100PC Spectrophotometer (VWR, Darmstadt, Germany). This suspension was used for biofilm cultivation by pipetting 300 µl per well in a 96-well plate and incubated again for 24 h at 30 °C without shaking to ensure cell adhesion. Afterward, the medium was removed to discard the non-adhered cells, and 300 µl of fresh medium was added. After another 24 h of incubation at 30 °C in the dark without shaking, the PTW treatment was realized.
2.4 PTW treatment of L. monocytogenes biofilms
After careful removal of the medium, 300 µl PTW produced by the MidiPLexc for the different post-treatment times were added to the biofilms. Only one post-treatment time was performed at the same time to avoid any drying effects on the biofilms. Afterward, the PTW was removed, and the biofilm was mechanically detached from the surface, before being dissolved in 300 µl PBS (pH 7.2; according to Sörensen). To ensure the transfer of the entire biofilm, this step was repeated two times in total, which resulted in a final suspension volume of 600 µl. This suspension was used for Colony-forming units (CFU) assay (2.5), fluorescence assay (2.6), as well as XTT assay (2.7). The mechanical detachment of the biofilms was omitted for fluorescence microscopy (2.8), confocal laser scanningmicroscopy (CLSM) (0) and atomic force microscopy (AFM) (2.10).
2.5 Determination of the remaining CFU after PTW treatment
To determine the CFU after PTW treatment of the biofilm, 100 µl were taken from the 600 µl suspension (2.4), and a serial dilution was performed. This was done by diluting the specimen in a ratio of 1:10 with maximum recovery diluent (MRD; 0.85% NaCl, 1% tryptone). The controls were finally diluted 1:1,000,000 and the samples 1:1,000. Each dilution step was plated on BHI agar by pipetting 10 µl per dilution onto the plate and spread out by using the tilting technique. The plates were incubated for 24 h at 30 °C, without shaking. The colonies for the respective dilution levels were counted manually, and the CFU/ml values were calculated by using the formula: , where 10x is the dilution factor for the lowest dilution, v is the volume of diluted cell suspension per plate in ml, ∑cy is the total number of colonies on all (ny) plates of the lowest evaluated dilution level, 10−x, and ∑cy+1 is the total number of colonies on all (ny+1) plates of the next-highest dilution level evaluated, 10−(x+1). The calculation is explained in more detail in (45).
The propagation of error was calculated for each treatment group. This finally resulted in 4 different error propagations for each treatment time, from which the weighted error was calculated and used as error bars in the illustration (Fig. 2) (46). The experiments were repeated fourfold with n = 3, which finally resulted in n = 12.
2.6 Fluorescence LIVE/DEAD assay
The LIVE/DEAD BacLight Bacterial Kit (Thermo Scientific, Waltham, USA) was prepared according to product instructions. Finally, 0.9 µl of the mixture were added to 300 µl of the specimen, followed by incubation on a rotary shaker at 30 rpm in the dark at room temperature for 20 min. A fluorescence microplate-reader (Varioskan-Flash®, Thermo Scientific, Waltham, USA) was used to determine the fluorescence of each well of the 96-well plate with an excitation wavelength of 470 nm and an emission wavelength of 530 nm or 630 nm for green (G) and red (R) fluorescence. Conclusively, a ratio G/R was calculated by dividing the intensity value of red fluorescence by the value of green fluorescence. The ratio G/R values of the controls and samples were expressed as a percentage in relation to each other and were graphically displayed using Origin 2019b software (OriginLab, Northhampton, USA). The experiments were repeated fourfold with n = 3, which finally resulted in n = 12.
2.7 XTT assay
A colorimetric assay was used to determine the cell vitality after plasma treatment (XTT Cell Proliferation Assay Kit, Applichem, St. Louis, USA). Therefore, the XTT assay revealed the cell vitality as a function of redox potential, which arises from a trans-plasma membrane electron transport (47). N-methyl dibenzopyrazine methylsulfate (PMS) was used as an intermediate electron carrier, which serves as an activator of the intended reaction. The XTT solution were mixed 1:50 with the activator solution and pipetted 1:3 to the samples, afterward. The 96well plate was incubated at 37 °C with continuous horizontal shaking (80 rpm) in the dark for 20–24 h. After the incubation time, the 96-well plate was scanned at a wavelength of 470 nm using the Varioskan-Flash® device. The obtained values were blank-corrected using XTT and the activation solution mix without bacterial suspension and scanned at a wavelength of 670 nm. The experiments were repeated fourfold with n = 3, which finally resulted in n = 12. The absorption values of the controls and samples were expressed as a percentage in relation to each other and were graphically displayed using Origin 2019b software.
2.8 Fluorescence microscopy
For fluorescence microscopy, transparent 96-well plates (Eppendorf, Hamburg, Germany) were used to grow biofilms. The LIVE/DEAD BacLight Kit (containing SYTO9 to stain all microorganisms, and propidium iodide (PI) to stain dead cells) was used according to the manufacturer’s protocol. Widefield fluorescence images were acquired using an Operetta CLS high content imaging device (PerkinElmer, Hamburg, Germany). For wholewell imaging, four fields of view were stitched digitally. A 5x objective (air, NA = 0.16, Zeiss, Oberkochen, Germany) was used. SYTO9 was excited by a 475 nm (110 mW) LED, and the fluorescence was collected with a 525 ± 25 nm bandpass filter. PI was excited by a 550 nm (170 mW) LED, and the emission light was collected with a 610 ± 40 nm bandpass filter. Laser autofocus (785 nm) provided exact focusing across all fields of view. For display, three stacks were merged into a maximum intensity projection to account for topographical particularities in the z-plane (focus ± 25 µm). For 3D images of biofilms, 30 z-planes (stacks) with 1.5 µm between each plane were measured using a 40x air objective (NA = 0.6). Three-dimensional reconstruction, image stitching, and quantification were done using Harmony 4.8 software (PerkinElmer, Hamburg, Germany).
2.9 CLSM
Biofilms were cultivated, plasma-treated, and LIVE/DEAD™ stained as described above (2.8). After the staining, the supernatants were removed and the biofilms were analyzed using a Zeiss LSM 510 microscope (Carl Zeiss, Jena, Germany) equipped with a 63 × objective (water, NA = 0.1). Filter and detector settings for monitoring SYTO9 and PI fluorescence (excitation at 488 nm using an argon laser, emission light of SYTO9 selected with a 505–530 nm band pass filter, emission light of PI selected with a 650 nm long pass filter). Three-dimensional images were acquired using the ZEN 2009 software (Carl Zeiss, Jena, Germany) with an area of 100 µm × 100 µm and z-stack sections of 5 µm.
2.10 Atomic-force microscopy
Since the AFM can only measure smaller samples in the measurement holder, an alternative to the 96-well plates had to be found. For this purpose, the biofilms for AFM measurements were grown on sterile polyethylene terephthalate, glycol-modified (PET-G) cover slips (13 mm, Sarstedt, Nümbrecht, Germany). For better adhesion of the coverslips to the bottom of the well plates and to avoid growth of the bacteria at the reverse side of the coverslips, 50 ml Gelrite (Duchefa, Haarlem, Netherlands) was autoclaved and directly used after the autoclaving process due to a rapid thermal curing process. A volume of 1 ml liquid Gelrite were pipetted to each well of a 12-well plate. The coverslips were placed at the surface of the liquid Gelrite and were thermally cured. The biofilms were cultivated as described above and 1 ml of BHI broth was pipetted to each well until the coverslips were topped with the medium. 12-well plates were incubated at 30 °C for 24 h without shaking. After the incubation time, the consumed BHI broth was removed to take non-adhered cells away. Subsequently, 1 ml fresh BHI broth was added to the wells, followed by an additional incubation at 30 °C for 24 h. The next day, the cultivation medium was removed and the coverslips with biofilms were treated for 5 min with the different PTWs of 100 s, 300 s and 900 s pre-treatment time. Dehydration of the coverslips before AFM analysis was avoided by using a humidity chamber. The AFM measurements were carried out on a DI CP II SPM (Veeco, Plainview, USA), which was mounted on a vibration-free object table (TS150, TableStable, Zwillikon, Switzerland). The setup was standing on an optical bench encased by an additional acoustic protection. The AFM was equipped with a linearized piezo scanner, on which the coverslips were mounted on a metal sample holder with leading tabs. The samples were measured using cantilevers (PLANO GmbH, Wetzlar, Germany) with nominal spring constants of k = 0.1–0.6 N/m in contact mode. The pictures were taken by a scanning speed of 0.4 Hz by a picture size of 20 µm2 and a set point = 8 N/m. Pictures were edited with Gwyddion (Czech Metrology Institute, Brno, Czech Republic).