Ethics declaration
This study was conducted at the experimental unit UE 1206 EASM of INRAE, France (https://doi.org/10.15454/1.5572418326133655E12), from February to June 2021 and slaughter was conducted at the experimental unit UE PEAT of INRAE, France (https://doi.org/10.15454/1.5572326250887292E12). It received Ethics committee approval by the Ethics Committee COMETHEA Poitou-Charentes (APAFIS#28675-2020120215483186 v3) in agreement with French and European legislation, and was carried out in accordance with relevant guidelines and regulations. This ethics committee is registered by the National Committee under the number C2EA 84. Reporting in the manuscript follows recommendations in ARRIVE guidelines.
Data availability
The data were deposited in an official repository entrepot.recherche.data.gouv.fr/dataverse/inrae. The data-sets generated and analysed during the current study are available on this website: https://entrepot.recherche.data.gouv.fr/dataverse/inrae. The data-sets digital object identifier ishttps://doi.org/10.57745/JS5HLR.
Acknowledgements
We are grateful to all members of the INRAE EASM unit, especially the animal caretakers, for their help with animal care. We thank all members of the INRAE PEAT unit and the INRAE BOA unit for their help at the slaughterhouse. We thank Alexandre Barbin and Nina Kruger for their help with data collection, Catherine Hurtaud for her help with ATOL ontology, and Pierre Blavy for his advice on statistical analysis and we are grateful to Julie Collet for her statistical support and reviewing. We also thank the breeding companies for providing 1-day-old chicks.
This study was funded by the PPILOW project and the French National Research Institute for Agriculture, Food, and Environment (INRAE). The PPILOW project has received funding from the European Union’s Horizon 2020 research and innovation programme under Grant Agreement No 816172.
Author contributions
C. Bonnefous, A.C., L.R., K.G., S.M-G., V.G., L.C., M.R., S.M., L.A.G., C.C., C. Berri. and E. B-D designed the experiment, C. Bonnefous, K.G., L.R., T.B., P.C., E.G., E.C-A., N.C., E.R., and E.A. participated to data collection, C. Bonnefous analysed the data and wrote the first draft of the manuscript. All authors revised and approved the final manuscript.
Additional information
Competing interests: The authors declare no competing interests.
Correspondence and requests for materials should be addressed to C. Bonnefous or A.C
Author ORCIDs
Bonnefous Claire: https://orcid.org/0000-0002-3522-5686
Collin Anne : https://orcid.org/0000-0002-3410-6108
Guilloteau Laurence A. : https://orcid.org/0000-0001-7089-2196
Germain Karine : https://orcid.org/0009-0005-6638-9404
Ravon Laure : https://orcid.org/0009-0009-7339-0875
Bordeau Thierry : https://orcid.org/0009-0005-0986-9647
Chartrin Pascal : https://orcid.org/0009-0003-0437-6195
Godet Estelle: https://orcid.org/0009-0001-4884-462X
Cailleau-Audouin Estelle: https://orcid.org/0009-0004-2403-4907
Couroussé Nathalie: https://orcid.org/0009-0004-3501-5330
Raynaud Emilie :
Sandrine Mignon-Grasteau: https://orcid.org/0000-0002-0142-0109
Guesdon Vanessa: https://orcid.org/0000-0003-3806-6163
Calandreau Ludovic: https://orcid.org/0000-0002-7535-5733
Berri Cécile: https://orcid.org/0000-0002-3613-1825
Reverchon Maxime: https://orcid.org/0000-0001-8329-7708
Mattioli Simona: https://orcid.org/0000-0001-5063-6785
Castellini Cesare: https://orcid.org/0000-0002-6134-0901
Angelucci Elisa : https://orcid.org/0000-0002-0040-5257
Le Bihan-Duval Elisabeth: https://orcid.org/0000-0002-0712-5549