Mouse treatment
Our experiments were carried out under the approval of the Ethics Committee of Liyang People's Hospital of Jiangsu Province on the basis of the Guide for the Care and Use of Laboratory Animals formulated by the National Institutes of Health. Substantial efforts were made to minimize the suffering and numbers of the animals used during the experiment. All mice used in this study were from Beijing Vital River Laboratory Animal Technology Co., Ltd. (Beijing, China). Twenty-seven C57BL/6N male mice (aged 6-8 weeks, weight 15-25 g) were allowed to acclimatize for one week in the animal facility (at a constant temperature of 22℃ with 12 h light and dark cycles) before any intervention was initiated. Mice were allocated into sham (shamed-operated mice), I/R (mice subjected to I/R surgery only), I/S (mice inhaled with Sev during the reperfusion of I/R surgery), NEAT1-negative control (NC) (mice injected with mock 48 h before I/R treatment), NEAT1-overexpression (OE, mice injected with NEAT1-OE 48 h before I/R treatment), miR-140 control (mice injected with miR-mock 48 h before I/R treatment), miR-140 inhibitor (mice injected with miR-140 inhibitor 48 h before I/R treatment), miR-140 inhibitor + dimethylsulfoxide (DMSO, mice injected with miR-140 inhibitor and DMSO 48 h before I/R treatment), miR-140 inhibitor + C3 (mice injected with miR-140 inhibitor and extracellular enzyme C3 48 h before I/R treatment) groups. NEAT1-OE and miR-140 inhibitor fragments and NCs were synthesized by GenePharma (Shanghai, China). The lentiviral vector pLenti6 (Thermo Fisher Scientific Inc., Waltham, MA, USA) was transfected with RNA fragments by BLOCK-iT lentiviral RNAi expression system (Thermo Fisher Scientific). The mice were then anesthetized with 1% pentobarbital sodium through an intraperitoneal injection at 60 mg/kg. A longitudinal incision was made between the 2nd, 3rd and 4th ribs to expose the heart. The corresponding transfection solution (10 μL) was slowly injected at the anterior wall of the left ventricle of the mouse. After the injection, the mouse chest was sutured.
Development of a myocardial I/R mouse model
On the day of I/R experiment, all mice were injected intraperitoneally with atropine at 0.04 mg/kg and with pentobarbital sodium at 60 mg/kg after 5 min. Once the respiratory frequency of mice reached 90 times/min, the mice were connected to an animal breathing apparatus, which was set at the frequency 90-105 times/min with a tidal volume at mL. A longitudinal incision was made between the second and fourth ribs to expose the heart and pericardium. The left anterior descending coronary artery was ligated from the tip of the left auricle. An electrocardiogram (ECG) was applied to assess the ischemic condition. After 30 min, blood flow was restored for reperfusion for 15 min, during which mice in the IS groups were inhaled with 2.4% Sev continuously, and mice in the sham group was inhaled with common air. The intercostal and pectoral muscles were sutured to close the chest after heart rhythm stabilization. After the suture, excess gas was extracted with needles from thoracic cavities. When the mice had mild spontaneous respiration, the apparatus was removed. Following the skin was sutured, the mice were put back into 25℃ animal rooms with a 0.5 mL saline intraperitoneal injection.
ECG
A small animal ultrasound imaging system was purchased from VisualSonics (FUJIFILM VisualSonics, Inc., Toronto, ON, Canada). The left ventricular end-diastolic volume (LVEDV), left ventricular end-systolic volume (LVESV), left ventricular end-diastolic diameter (LVDd) and left ventricular end-systolic diameter (LVDs) were measured to obtain left ventricular ejection fraction (LVEF) and left ventricular fractional shortening (LVFS). LVEF (%) = (LVEDV - LVESV)/(LVEDV) × 100%, LVFS (%) = (LVDd - LVDs)/LVDd × 100%.
Triphenyl tetrazolium chloride (TTC) staining
After testing the cardiac cycle of mice, we performed euthanasia by intraperitoneal injection of 1% sodium pentobarbital at 150 mg/kg. Once observing the lack of heartbeat, respiratory arrest, pupil dilation, and lack of nerve reflex, the mouse heart tissues were removed and fixed in 4% paraformaldehyde immediately, frozen and cut into 5 μm slices. Afterwards, sliced fresh tissues were cultured in a petri dish containing TTC staining solution (Solabio, China). After a 30-min incubation at 37℃, the stained sections were removed with a pipette, rinsed with 4℃ phosphate buffered saline, observed by naked eyes and photographed. The red part represents normal non-ischemic myocardial tissues, the gray part represents ischemic but non-infarct myocardial tissues, and the white part represents myocardial tissues with ischemic infarction. Image-Pro Plus 6.0 software was applied to determine the percentage of myocardial infarction area.
Terminal deoxynucleotidyl transferase (TdT)‐mediated dUTP nick‐end labeling (TUNEL) staining
The cells in logarithmic growth of each group were plated at 1 × 106 cells/mL on the cover glasses in the 6-well plate. TUNEL apoptosis was detected using In Situ Cell Death Detection Kit-peroxidase (Roche, Basel, Switzerland). The cell suspension was coated on the cover glasses, reacted with Proteinase K for 15 min and incubated with 50 μL TUNEL solution in a dark chamber for 1 h at 37℃. Following a 10-min treatment with 50 μL diaminobenzidine, the results were recorded using an M-60 microscope (Olympus Optical Co., Ltd., Tokyo, Japan) equipped with BH2 system with attached 35 mm camera (Olympus). The number of TUNEL-positive cells was counted under five randomly-selected high magnification views.
Microarray analysis
Total RNA was extracted by ice-lysed mouse tissue homogenate in Trizol (Beijing Solabio Life Sciences Co., Ltd., Beijing, China). A total of 0.5 μg total RNA was reversely transcribed into cDNA through PrimeScript™ IV 1st strand cDNA Synthesis Mix (Takara Holdings Inc., Kyoto, Japan). The cDNA was then fragmented and hybridized with a mouse lncRNA expression array V6.0 (Shanghai Biotechnology Corporation), and then the array was screened using GeneChipTM Scanner 3000 7G system (Thermo Fisher Scientific Inc., Waltham, MA, USA). Scanning results were subjected to quality assessment and data correction. R language package was used to plot the heatmap using processed data. p < 0.01 and |log2 FoldChange| were used as the screening criteria, and the top ten RNAs were selected for analysis.
Reverse transcription quantitative polymerase chain reaction (RT-qPCR)
Total RNA was used for RNA extraction from tissues using Trizol. Totally 5 µg total RNA was collected for reverse transcription and RT-qPCR through the SuperScript™ IV One-Step RT-PCR System. U6 and glyceraldehyde-3-phosphate dehydrogenase (GAPDH) served as the internal normalized references. The primers are displayed in Table 1. Relative expression of targets was determined using 2-ΔΔCt.
Luciferase reporter assay
HEK293T cells (Cell Bank of Shanghai Institute of Cells, Chinese Academy of Science, Shanghai, China) were grown in Dulbecco’s modified Eagle’s medium. When the density reached 80%-90%, the cells were detached with 0.25% trypsin and passaged in a 5% CO2 incubator at 37℃, and the cells in logarithmic growth phase were harvested for further experiments. The targets of NEAT1 and miR-140 were analyzed using StarBase and verified by luciferase reporter assays. The miRNA 3’untranslated region (3’UTR) sequence and the lncRNA and mRNA 3’UTR sequence were inserted into pGL4.18 luciferase reporter vectors (Promega Corporation). HEK293T cell co-transfection was carried out using Lipofectamine 3000 (Invitrogen, Carlsbad, CA, USA). After 24 h, the cells were lysed, and the luciferase activity was assessed by a dual-luciferase reporter assay system (Promega). The ratio of firefly luciferase activity to renilla luciferase activity reflects the relative luciferase activity.
Western blot
After 48 h of transfection, the cells were lysed on ice with radio immunoprecipitation assay lysis buffer. The samples were centrifuged at 20000 g for a period of 10 min at 4℃ to collect the supernatant. Following the protein quantification using a bicinchoninic acid kit (Sigma-Aldrich Chemical Company, St Louis, MO, USA). We then separated 15 μg protein lysates using 12% sodium dodecyl sulphate-polyacrylamide gel electrophoresis. Afterwards, the proteins were transferred to polyvinylidene fluoride membranes (Millipore, Billerica, MA, USA) and sealed with 5% skim milk for 2 h. Blots were probed with the primary antibody against RhoA (ab187027, Abcam Inc., Cambridge, UK) at 4℃ overnight and with the secondary antibody (ab205718, Abcam) for 3 h at room temperature. At last, the immunoblot was visualized by Superstar electrochemiluminescence Plus. Gel imaging system (Bio-Rad Laboratories, Hercules, CA, USA) was applied to determine protein expression.
Statistics
Statistical analysis was validated by SPSS 22.0 (IBM Corp. Armonk, NY, USA). All data are expressed as mean ± standard derivation (SD). Statistical significance was determined using unpaired t test and one-way or two-way analysis of variance (ANOVA), as appropriate. If ANOVA was significant, individual differences were assessed using the Tukey’s post-test. For all studies, values of p < 0.05 were considered statistically significant.