Clinical samples and ethics statement
All LUAD tissues and adjacent non-tumor lung tissues (n = 60) were collected with the consent of patients. All experiment regarding clinical samples were performed in accordance with the ethical guidelines of the Declaration of Helsinki and approved by the Ethics Committee of International Medical Center Hospital.
Cell culture and transfection
Normal lung epithelial cell line BEAS2B, LUAD cell lines A549 and H1975 were purchased from Procell (China). LUAD cell lines HCC2935 and PC-9 were obtained from the American type culture collection (ATCC) cell bank. BEAS2B, A549 and H1975 cells were cultured with dulbecco's modified eagle medium (DMEM) containing 10% fatal bovine serum (FBS). HCC2935 and PC-9 cells were maintained in Roswell Park Memorial Institute-1640 (RPMI-1640) medium with 10% FBS. LINC00968 was inserted into lentiviral vector pRLenti-CMV-MCS-3FLAG (OBIO, China) for over-expression. LINC00968 lentivirus and negative control (NC) lentivirus, termed as LV-LINC00968 and LV-NC, were packed and amplified in HEK293T cells. MiR-22-5p mimics, non-specific (NC) mimics, miR-22-5p agomir, NC agomir and NC agomir were synthesized in GenePharma (China). CDC14A was inserted into pcDNA3.1 between Xho I and BamH I for over-expression, termed as pcDNA3.1-CDC14A. Cells were transfected with mimics, agomirs and pcDNA3.1 vectors using lipofectamine2000 according to the manufactures’ instruction.
Quantitative real-time PCR
LUAD and adjacent non-tumor tissues were smashed using a grinder. Patient samples and cell lines were lysed with Trizol reagent (ThermoFisher, USA) to extract total RNAs, which was further reversely transcribed into cDNA using SuperScript IV reverse transcriptase (ThermoFisher, USA). Then cDNA products were quantified by real-time PCR using SYBR Green (Solarbio, China). Housekeeping gene GAPDH was used as an internal control for LINC00968 and CDC14A, RNU6B was used as an internal control for miR-22-5p. Results from quantitative real-time was analyzed using g the 2−△△CT method. All primers used were listed as below:
LINC00968-forward: 5’-CCACTCCTTTAGTCGTTGTGC-3’; LINC00968-reverse: 5’-GGTCCCTCATTCCTATCCC-3’;
MiR-22-5p-forward: 5’-AGTTCTTCAGTGGCAAGCTTTA-3’; miR-22-5p-reverse: 5’-TGGTGTCGTGGAGTCG-3’;
CDC14A-forward: 5’-GGGGAACTAATCGGGGCTTG-3’; CDC14A-reverse: 5’-CAGCGGTCCAAAATCTGCATA-3’;
GAPDH-forward: 5’-ACAACTTTGGTATCGTGGAAGG-3’; GAPDH-reverse: 5’-GCCATCACGCCACAGTTTC-3’;
RNU6B-forward: 5’-CTCGCTTCGGCAGCACA-3; RNU6B-reverse: 5’-TGGTGTCGTGGAGTCG-3’;
Cell counting kit-8 (CCK-8)assay
A549 and H1975 cells showed relative lower LINC00968 level among four LUAD cell lines, thus they were chosen for subsequent investigations. Cell proliferation was determined using cell counting kit-8 (MedChemExpress, USA) following the manufactures’ instruction. A549 and H1975 cells were seeded into a 96-well plate (2 × 104 cells/well) and cultured for 24 hours. Cells were treated with LV-LINC00968/LV-NC, miR-22-5p agomir/NC-agomir or pcDNA3.1-CDC14A/vector, followed by incubation for 24 hours, 48 hours, 72 hours and 96 hours. Then cells were incubated with 10 µl CCK-8 solution for 3 hours and absorbance at 450 nm was measured using a microplate reader.
Cell cycle detection
A549 and H1975 cells were harvested and re-suspended with PBS buffer after treatment. Cells were fixed with 1 ml pre-cooled 70% ethanol for 2 hours and rinsed with PBS buffer. Then cells were incubated with 500 µl propidium iodide (50 µg/ml) for 37 ℃ for 30 minutes, followed by flow cytometry detection within 24 hours.
Wound healing and transwell assay
Wound healing assay was used to assess cell migration. A549 and H1975 cells were seeded into a 6-well plate and cultured to confluence, scratch on the cell momolayer was performed using a 200 µl piptte tip, followed by observation under a microscope 24 hours after scratch. Transwell assay was performed to evaluate cell invasive capacity. A549 and H1975 cells were seeded into the Matrigel pre-coated upper chamber and cultured with serum-free culture medium for 48 hours, and lower chamber with culture medium containing 20% FBS was used as an attractant. Cells invaded to the lower chamber were fixed with 4% paraformaldehyde and stained with 1% crystal violet for 5 minutes, followed by cell counting under a microscope.
Western blotting
A549 and H1975 cells were harvested and lysed with RIPA lysis buffer (Beyotime, China) after treatment, followed by quantification with commercial QuantiPro BCA assay kit (Sigma, USA). Then equivalent amount of total proteins were fractionated on SDS-polyacrylamide gel and then transferred onto a polyvinylidene fluoride (PVDF) membrane (ThermoFisher, USA). The PVDF membrane was sealed with 5% skim milk and incubated with primary antibodies overnight at 4℃. After rinsing with PBS buffer for three times, the PVDF membrane were incubated with secondary antibodies for 60 minutes at room temperature. Then PVDF membrane was illuminated with ECL luminescence reagent (Sangon, China), and relative protein levels were analyzed using IPP6.0. Primary antibodies used in this study were E-cadherin antibody (1:1000, SinoBiological, China), N-cadherin antibody (1:1000, SinoBiological, China), SNAIL antibody (1:1000, Affinity, USA), TWIST antibody (1:1000, Affinity, USA) and CDC14A antibody (1:1000, Affinity, USA). HRP- conjugated goat anti-rabbit antibody (1:5000, Affinity, USA) was used as secondary antibody.
Luciferase reporter assay
The interactions between LINC00968 and miR-22-5p and between miR-22-5p and CDC14A were validated using luciferase reporter assay. In brief, mutant type of LINC00968 and CDC14A, termed as LINC00968-MUT and CDC14A-MUT, absent miR-22-5p binding site were obtained using overlapping PCR. Wildtype and mutant type of LINC00968 and CDC14A were amplified and cloned into pmiRGLO vector. The recombinant pmiRGLO plasmids were co-transfected with miR-22-5p/NC mimics into A549 and H1975 cells. The binding activity was assessed by measuring absorbance at 560 nm using commercial Luciferase Reporter Assay Kit (ThermoFisher, USA).
Fluorescent in situ hybridation (FISH)
FISH assay was performed to detect the subcellular localization of LINC00968 in LUAD cells. In brief, A549 and H1975 cells were baked at 37 ℃ for two hours and dehydrated in 50%, 80% and 98% gradient ethanol for 3 minutes. Then A549 and H1975 cells were hybridized with cy3-labelled LINC00968 (RiboBio, China) probe or NC probe (RiboBio, China) for 16 hours at 42 ℃. After staining with DAPI avoiding light for 5 minutes, typical images were captured under a microscope.
RNA immunoprecipitation (RIP)
The enrichment of LINC00968 and miR-22-5p on Argonaute 2 (Ago2) protein was evaluated using RIP assay kit (MBL life science, Japan). A549 and H1975 cells were lysed using 200 µl RIP lysis buffer, cell lysate was centrifuged and 15 µl of supernatant was used as input. The rest of supernatant protein was incubated with anti-Ago2-coated agarose beads (MBL life science, Japan) overnight at 4℃, rabbit IgG was used as a control. The expression of Ago2 was detected by subsequent western blotting, and expression of LINC00968 and miR-22-5p was measured by quantitative real-time PCR.
RNA pull down
A549 and H1975 cells were lysed using lysis buffer containing RNase inhibitor and proteinase inhibitor. Cell lysate was centrifuged and re-suspended with hybridation buffer. Then cell lysate was incubated with biotinylated miR-22-5p or NC probes for 5 hours and incubated with magnetic streptavidin beads overnight at 4℃. The enriched RNA was purified and analyzed using quantitative real-time PCR.
In vivo tumor growth
Healthy 6 to 8-week old C57BL/6J mice were purchased from the experimental animal center of BIOCYTOGEN (China). A549 cells were cultured to exponential phase, infected with LV-LINC00968/LV-NC and miR-22-5p agomir. Then A549 cells (2 × 106 cells/mice) were subcutaneously injected to mice to establish tumor xenograft model (n = 6). Tumor volumes were measured every week for five weeks, and mice were euthanized at fifth week. Tumor weight was recorded and tumor tissues were fixed with 4% paraformaldehyde for subsequent detection. All animal experiments were performed following the guidelines for the care and use of laboratory animals and approved by the Ethics Committee of International Medical Center Hospital.
Immunohistochemistry
Immunohistochemistry assay was performed to detect the expression of Ki67 in mouse tumor tissues. In brief, 5 µm of tissue sections were deparaffinized and boiled with 10 mM, pH6.0 citric acid buffer for 15 minutes for antigen retrieval. Then tissue sections were blocked with 5% goat serum for one hour and incubated with Ki67 antibody (1:200, SinoBiological, China) overnight at 4℃. After washing with TBS buffer (0.1% Tween 20 in PBS buffer), tissue sections were incubated with HRP-conjugated secondary antibody and Ki67 signal was developed using 3, 3’-diaminobenzidine ((Sangon, China)).
Statistical analysis
All results in our study were presented as means ± SD and all data analysis was conducted using Graphpad Prism 8.0. Mean values between two groups were analyzed by Students’ t-test. Survival rate was analyzed using Log-rank (Mantel-Cox) test. Data from Cell counting kit-8 assay, tumor growth and luciferase reporter assay were analyzed by Two-way ANOVA. The correlation between LINC00968 level and clinicpathological characteristics of LUAD patients were analyzed using Pearson χ2 test. The rest of results were analyzed using One-way ANOVA. All experiments were repeated for more than three times and p values less than 0.05 were considered as statistically significant.