2.1 Cell lines and culture conditions
The breast cancer cell lines MDA-MB-231 and MCF-7 were obtained from the American Type Culture Collection (ATCC; Manassas, VA). These breast cancer cells were cultured in DMEM (C11995501BT, GIBCO, USA) with 10% fetal bovine serum (FBS) (10270106, GIBCO, USA) under a humidified atmosphere of 37 °C and 5% CO2 (WCI-180, Wiggens, Germany). The multidrug-resistant cell line MDA-MB-231/MDR was induced by cisplatin (MB1055, Dalian Mellon, China) by treating with a range of low to high concentrations [18].
2.2 Immunofluorescence
Cells were seeded in 6-well plates and incubated overnight to allow the cells to attach, after which they were treated with DMSO (D2650, Sigma, USA) or taxol (5 nM) (MB1178, Dalian Mellon, China) with or without MCL-1 inhibitor (M-i) (S63845, MCE) for 48 h. Then, cells were washed with PBS, fixed with acetone for 10 min at room temperature, permeabilized with 0.3% Triton X-100 in PBS for 30 min at 37 ℃, blocked with 5% BSA in PBS for 30 min, and incubated with anti-MCL-1 (1:100, CST, Boston, USA) and anti-CD44 (1:100, CST, Boston, USA) overnight at 4 ℃. After that, the cells were incubated with goat anti-mouse 488 (ab150113, Abcam, England) and goat anti-rabbit 555 (ab150078, Abcam, England) for 1 h at room temperature. Cells were mounted with DAPI and observed under a laser confocal microscope (LSM710,ZEISS༌Germany).
2.3 Western blot analysis
Cells were homogenized in RIPA buffer supplemented with protease inhibitors (CW22005, Kangwei, Beijing, China), and the protein concentrations were detected using a BCA assay kit (CWBIO, Beijing, China). After normalizing to obtain an equal protein concentration, samples were resuspended in SDS sample buffer before separation by SDS-PAGE. The proteins were transferred onto polyvinylidene difluoride membranes (ISEQ00010, Millipore, SUA). Then, membranes were blocked with 5% BSA and probed at 4 °C overnight using the following antibodies: anti-MCL-1 antibody, anti-CD44 antibody (1:1000), anti-OCT4 antibody (1:1000, CST, Boston, USA), anti-NANOG antibody (1:1000, CST, Boston, USA), anti-ALDHA1 antibody (1:1000, CST, Boston, USA) and anti-GAPDH antibody (1:1000, CST, Boston, USA). After incubation with the appropriate secondary antibody for 1.5 h at room temperature, proteins were visualized by enhanced chemiluminescent reagent on a multifunctional imaging system (Tanon 5200).
2.4 MCL-1 overexpression and inhibitor
MB231 and MCF-7 cell lines were stably transfected with a lentiviral vector (pReceiver-Lv105-pure vector) by lentiviral transduction (MOI = 3), and they were selected by treatment with 5 µg/ml puromycin (219453925, MPbio, USA). Human MCL-1 cDNA (GeneCopoeia, EX-Z9207-Lv105-B, cDNA clone) or an empty vector was seeded into the pReceiver-Lv105-pure vector and were selected by treatment 2 µg/ml puromycin. MCL-1 was analyzed by WB and qRT-PCR. The MCL-1 inhibitor (M-i) S63845 was purchased from MCE. We used it at 10 nm, which is a concentration that results in no cytotoxicity.
2.5 Cell viability assay
Cells (5000 cells/well) were seeded in 96-well plates and placed in the cell culture incubator at 37 °C overnight to allow the cells to attach, after which they were treated with taxol at concentrations of 0, 1.625, 3.125, 6.250, 12.500, 25.000, 50.000, 100.000, 200.000 nM in the presence or absence of M-i (5 nm in DMSO) for 48 h. Cell viability was determined by MTT ((3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl tetrazolium bromide) assay (Sigma-Aldrich, Saint Louis, MO, USA), and then the percentages of viable cells was measured by absorbance value (OD) (VICTOR X5, PerkinElmer, USA) at 490 nm. The experiments were repeated three times.
2.6 Mammosphere formation assay
Cells were grown in serum-free DMEM supplemented with 1X B27 and were plated in ultralow attachment plates at a density of 10,000 viable cells/mL, and then they were grown for 10 days. Mammospheres were observed under a microscope and were photographed. The experiments were repeated three times.
2.7 Colony formation assay
NC and MCL-1-overexpressing cells were seeded into a 24-well plate (5 × 102 cells/well) and cultured in DMEM for 48 h. Then, the fixed colonies formed were stained with crystal violet. The colony formation assay was repeated three times.
2.8 Flow cytometry
CD44 and CD24 were analyzed using flow cytometry. NC and MCL-1-overexpressing cells were then suspended in flow cytometry staining buffer at a final cell concentration of 1 × 106 cells/mL. Cells were incubated with the following fluorescent monoclonal antibodies (eBioscienceTM, Thermo Fisher Scientific): CD44 and CD24. Cells were washed two times with 2 mL of flow cytometry staining flow cytometry buffer and resuspended in 500 µL of flow cytometry staining buffer. Flow cytometry analyses were performed on a BD flow cytometer (Calibur, BD, USA). The experiment was performed three times.
2.9 RNA extraction and real-time PCR
RNA was extracted from cells using TRIzol reagent (Takara, Beijing, China), and total RNA was reverse transcribed into cDNA. Quantitative real-time PCR was carried out using TB Green™ Premix Ex Taq™ II (Takara, Beijing, China) with a CFX96™ Real-Time System (ABI Quant Studio 7 Flex, Applied Biosystems, USA). GAPDH was used as the control, and the relative mRNA levels were analyzed by the 2(−△△Ct) method. The primer sequences are listed in Table 1.
Table 1
Real-Time PCR primers for genes
Gene | Primers Squence (5'->3') |
MCL-1 | Forward | ATGCTTCGGAAACTGGACAT |
Reverse | TCCTGATGCCACCTTCTTCTAGG |
BCL-1 | Forward | TCTGCGAGGAACAGAAGTGC |
Reverse | GAAATCGTGCGGGGTCATTG |
BCL-xL | Forward | TGGTGAGTCGGATTGCAAGTT |
Reverse | GTCAGGAACCAGCGGTTGAA |
BAX | Forward | AGCTCTGAGCAGATCATGAAGAC |
Reverse | AGTTGAAGTTGCCGTCAGAAAAC |
BID | Forward | ACAGGGTACGATAACCGGGA |
Reverse | GGGCCGTACAGTTCCACAAA |
BAD | Forward | GTGACGAGTTGTGGACTCCT |
Reverse | ATCCCACCAGGACTGGAAGA |
CD44 | Forward | CCCTGCTACCAGACACTCA |
Reverse | TGTTCACCAAATGCACCAT |
LRP6 | Forward | TGCAGAATGTTGTTGTTTCTG |
Reverse | AATTAGAAACTTCAATCCGATTA |
SOX2 | Forward | TGCTGCCTCTTTAAGACTAGGAC |
Reverse | CCTGGGGCTCAAACTTCTCT |
OCT4 | Forward | CCTGTCTCCGTCACCACTCT |
Reverse | CAAAAACCCTGGCACAAACT |
Nanog | Forward | TTTGTGGGCCTGAAGAAAACT |
Reverse | AGGGCTGTCCTGAATAAGCAG |
GAPDH | Forward | TGGTGAAGGTCGGTGTGAAC |
Reverse | GCTCCTGGAAGATGGTGATGG |
2.10 Clinical information and tissue samples
This study was approved by the Ethics Committee of Guangdong Hospital of Traditional Chinese Medicine. All patients provided written informed consent to participate in the study. A total of 168 breast cancer (Table 2) tissues from patients with neoadjuvant chemotherapy sensitivity (NAC-S), neoadjuvant chemotherapy resistance (NAC-R), post neoadjuvant chemotherapy (post-NAC) and pre-neoadjuvant chemotherapy (pre-NAC) were used for the detection of MCL-1 and CD44 by IHC. Clinical information included basic information, tumor subtype, Ki67 expression and regimens. The overall survival (OS) times were calculated from the date of surgery to the end of follow-up.
Table 2
Correlation between MCL-1 expression and clinicopathologic characteristics of BC patients.
Characteristic | NAC-R(N = 41) | NAC-S(N = 127) | P |
N | % | N | % |
Age at diagnosis, years | | | | | |
Mean ± SD | 51.15 ± 12.02 | 50.87 ± 8.95 | 0.874 |
Median(range) | | | | | |
≤44 | 12 | 29.3 | 25 | 19.7 | 0.045 |
45–60 | 20 | 48.8 | 88 | 69.2 |
≥61 | 9 | 22.0 | 14 | 11.0 |
Subtype | | | | | |
Luminal | 22 | 53.7 | 47 | 37.0 | 0.069 |
HER2(+) | 12 | 29.3 | 53 | 41.7 |
TNBC | 7 | 17.1 | 25 | 19.7 |
NA(not available) | 0 | 0.0 | 2 | 1.6 |
Ki 67 | | | | | |
༜50% | 37 | 90.2 | 108 | 85.0 | 0.254 |
≥50% | 4 | 9.8 | 19 | 15.0 |
Regimens | | | | | |
Taxol-based | 37 | 90.2 | 124 | 97.6 | 0.06 |
Others | 4 | 9.8 | 3 | 2.4 |
2.11 Animals
All animal experiments were ethically carried out and were approved by the animal experiment committee of Guangdong Hospital of Traditional Chinese Medicine. Six-week-old female nude mice were purchased from Guangdong Medical Laboratory Animal Center (Fushan, Guangdong, China), and they were housed and fed in standard pathogen-free conditions. For tumor-limiting dilution assays, 1 × 103, 5 × 103, 1 × 104, 5 × 104 and 1 × 105 MDA-MB-231 cells with or without MCL-1 overexpression were mixed with Matrigrl matrix (1:1, BD Biosciences, San Jose, CA, USA) and orthotopically implanted in the inguinal mammary gland of mice. Stem cell frequencies were calculated using an ELDA (http://bioinf.wehi.edu.au/software/elda/). Additionally, 1 × 105 MDA-MB-231 cells were implanted in the inguinal mammary gland of mice. Ten days later, when the tumors reached a volume of 100 mm3, we randomly allocated the mice to groups in which they received taxol (5 mg/kg), MCL-1 with taxol (5 mg/kg), M-i (2.5 mg/kg) with taxol (5 mg/kg) or DMSO. Mice were euthanized 35 days after the administration.
2.12 Immunohistochemistry
Immunohistochemistry (IHC) was conducted on paraffin-embedded sections. Before staining, paraffin sections were incubated at 60 °C for 1 h for dewaxing and treatment with dimethylbenzene two times for 15 min. The tissue sections were soaked in a series of ethanol solutions with concentrations of 100%, 100%, 95%, 80% and 75% for 5 min and then soaked in distilled water for 5 min. Afterwards, the tissue sections were incubated with sodium citrate antigen retrieval solution for 10 min and in 3% H2O2 for 15 min, which was followed by 5% BSA for 40 min at 37 °C. Then, the tissue sections were incubated overnight at 4 °C with a primary anti-MCL-1 antibody (1:200 dilution in PBS, CST, Boston, USA) or an anti-CD44 antibody (1:200 dilution in PBS, CST, Boston, USA) and goat anti-mouse or anti-rabbit IgG for 30 min at room temperature. MCL-1 expression was visualized by DAB staining, and tissue sections were counterstained with hematoxylin. Finally, tissue sections were evaluated under light microscopy (Olympus BX53, Olympus, Japan).
2.13 Transcriptional reporter gene assay
Cells overexpressing MCL-1 and control cells were cultured in 96-well plates at a concentration of 5000 cells per well. Two hundred nanograms of TCF reporter plasmid, GLI reporter plasmid or RBP-JK reporter plasmid (Millipore) and 10 ng of pRL-TK (Renilla-TK-luciferase vector, Promega) were cotransfected into the cells. After 48 h, a Dual-Glo Luciferase reporter Assay System (E1910, Promega) was used to measure the luciferase activities following the manufacturer’s instructions.
2.14 Coimmunoprecipitation assay and coculture immunoprecipitation assay
For the coimmunoprecipitation assay, MB-231 cell lysates transfected with Flag-tagged MCL-1 or a vector control were subjected to immunoprecipitation with Flag antibody (1:1000) or control IgG for 2 h at 4 °C. All immunoprecipitations were performed with protein A/G sepharose (Santa Cruz Biotechnology) while rotating at 4 °C overnight. The beads were collected by centrifugation at 3000 rpm and then were washed three times with lysis buffer. The immunoprecipitants were subjected to WB.
For the coculture IP assay, 293T cells were cultured in 6-well plates and individually transfected with 0.5 µg of MCL-1-Flag expression plasmids or LRP6-HA, Wnt3a-myc or Wnt10b-His plasmids (Thermo Fisher Scientific, Shanghai) using Lipofectamine 3000. After 24 h of coculture, cell lysates with LRP6 receptors and cell lysates with Wnt3a or Wnt10b ligands were prepared at a ratio of 1:2:2 to detect the interaction of the LRP6 receptor and two ligands. The subsequent steps were the same as the IP assay mentioned above.
2.15 Statistical analysis
Data are presented as the means ± standard deviation, and GraphPad Prism (version 8, San Diego, CA, USA) was used to conduct statistical analyses. The significance of a difference between the groups was tested using Student’s t-test for the data. A P-value < 0.05 was considered statistically significant.