The prolonged use of antibiotics causes the emergence of various MDR strains and reduces the potency and efficacy of the antibiotics[30]. This decreases the survival rate from different infections and also limits cancer treatment, surgery, and transplant[31]. Currently, 700 000 deaths were reported globally due to AMR out of which 230 000 deaths are only due to MDR tuberculosis. Despite of covid-19, MDR bacteria causes 10 million death every year by 2050 and force 24 million people into extreme poverty by 2030[32, 33]. Thus the AIM of the study is to identify the most prevalent pathogen and AMR trend during the pre and post COVID era in the Hazara division KPK.
A wide spectrum of antibacterial drugs is used in combination to treat the covid-19 patients[34]. Almost 15% and 71% of the patients get antifungal and antibacterial treatment. Out of 71% of the patients, 25% are medicated with a single antibiotic while 45% are treated with a combination of antibiotics[35]. Moxifloxacin (64%), ceftriaxone (25%), and azithromycin (18%) are administrated to sick patients[36]. Vancomycin and Amikacin are also administrated to neonates that have non-specific symptoms of covid-19[37]. As azithromycin inhabits the zika and Ebola viruses so the combination of hydroxychloroquine and azithromycin was seen as more effective in the covid-19 treatment[38, 39]. Azithromycin, doxycycline, and rapamycin cause the inhabitation of protein synthesis and also decreases inflammation and viral replication, so these drugs are also used in the treatment of the covid-19[40].
In the current study Escherichia coli (46%) is the most commonly isolated bacteria from the urine samples and the main cause of urinary tract infections[41]. UTI is the most common infection especially in females at least 50–60% of females suffer from this infection once in their life[42]. Untreated UTIs lead to kidney damage and renal failure[43]. Uropathogenic E.coli(UPEC) differs from other strains of E.coli that are more adapted to live in the urinary tract rather than the gastrointestinal tract. The two major mechanisms that help the UPEC to survive in the urinary tract are urothelial cell invasion and biofilm formation. Yet there is no test available to confirm the isolated E.coli is UPEC if it is isolated from the other samples rather than the urine samples[44, 45]. Some of the E.coli was also isolated from the HVS samples. The infectious agents more easily grow in the vaginal areas and from the anus or the urinary tract it is also possible these infectious agents may to the reproductive organs. In many studies, females with recurrent UTIs have a high magnitude and frequency of vaginal colonization with UPEC strains[46]. The presence of E.coli in the vaginal tract is one of the causes of female infertility[47].
In our data set the second most common isolated bacteria is Staphylococcus spp about 18.4%. Several other studies show the same trend[48]. As the staphylococcus ssp is the normal flora of the skin to the nasal cavity and gut[49, 50] so it is mostly isolated from the pus samples followed by urine, wound, blood, and HVS[51]. Some fluctuation in the prevalence of the climate conditions and the high temperature reduces the growth of S.aureus colonization[52, 53]. Klebsiella spp is the 3rd most common bacteria most isolated from the urine samples. The little portion was also isolated from the HVS and pus samples. Klebsiella spp is 2nd most prevalent pathogen in uropathogens[54]. The other uropathogens were also isolated such as Enterococcus spp (5.5%), Coliform spp (4.9%), Pseudomonas spp (3.6%), Enterobacter spp (3.2%), Candida spp (2.3%) similar to the other studies[55]. The prevalence of the salmonella typhi and Burkholderia cepacia is 1.1% and 0.4% respectively. Both of these bacteria is causes the blood infections[56].
The more AMR percentage is seen in the females as compare to the males. As the females have strong immune response than the males but the chances of the bacterial infection in females is higher due to the anatomical position and structure of female organs[57]. In the female’s urethra is shorter than the male’s counterpart that causes it easier for bacteria to reach at the bladder. Similarly, the Physical proximity of the urethral opening to the rectum and vagina causes the colonization of the enteric bacteria in the periurethral mucosa[58]. While in the man, there are some additional protective features like dryer environment at the urethral opening and prostate secretions also have antibacterial activities[59].
In data analysis, high resistance is seen in Amoxicillin, Ampicillin, Augmentin, Ciprofloxacin, Cefotaxime, Cefixime, Septran, Levofloxacin, Optochin, Oxacillin, Erythromycin, Cefepime, and Ceftazidime with the uptrend. According to the study in 2018, The Escherichia coli is highly resistance against Ampicillin, Cefotaxime, ciprofloxacin, and sulfamethoxazole [60]. Similarly, other studies documented that Klebsiella spp, Salmonella typhi, and Streptococcus spp are highly resistance to Ciprofloxacin [61–63]. The different studies from 2009 to 2018 show increasing antibiotic resistance in Escherichia coli against Ampicillin, Ciprofloxacin, and Sulfamethoxazole [64–67]. Different studies in South Asia report the widespread of fluoroquinolones together with the rapid increase in Carbapenem-resistant Enterobacteriaceae (CRE) over the past decade [68–71].
Studies have shown that the antimicrobial resistance (AMR) problem is not limited to non-prescription dispensing, but also extends to the efficacy of commonly prescribed antimicrobial agents. For instance, medium levels of resistance have been observed in several commonly used antimicrobial agents, including Sulzone, Gentamycin, Imipenem, Meropenem, Fosfomycin, Tigecycline, Piperacillin-Tazobactam (PPT), Ertapenem (ETP), Rifampicin, Nitrofurantoin (NIT), Rifampicin (RFP), and Doxycycline [61, 62, 72, 73]. Very low resistance is seen in Amikacin, Chloroamphicol, Clostin, Linezolid, Teicoplanin, Vancomycin, Polymyxin, Tazocin, and Oxytetracycline. In many studies, Amikacin is sensitive to uropathogens [74, 75]. In the Salmonella spp, the increasing pattern of resistance is seen in Asian countries [76].
Studies have also shown that several antimicrobial agents, including Amikacin, Chloramphenicol, Colistin, Linezolid, Teicoplanin, Vancomycin, Polymyxin, Tazocin, and Oxytetracycline, exhibit very low resistance rates against various bacterial pathogens. Amikacin, in particular, is effective against several uropathogens, including Escherichia coli, Klebsiella spp, Proteus spp, and Pseudomonas aeruginosa [77]. This antimicrobial agent belongs to the aminoglycoside class and is often used as an alternative treatment option for patients who are resistant to other antimicrobial agents. Chloramphenicol, on the other hand, is a broad-spectrum antibiotic that has been used for the treatment of a wide range of bacterial infections. However, due to its potential toxicity and the emergence of resistance, its use is now limited to certain indications [78]. Colistin is another antimicrobial agent that has gained attention in recent years as a last-resort treatment option for multidrug-resistant Gram-negative infections. It is administered intravenously and can cause kidney toxicity at high doses, hence careful monitoring of patients is necessary. The low resistance rates observed in these antimicrobial agents highlight the importance of appropriate antimicrobial use and the need to preserve the effectiveness of existing antimicrobial agents. The development of new antimicrobial agents is also crucial for addressing the AMR problem and ensuring that effective treatment options are available for bacterial infections [79].
However, the long-term effect of COVID-19 remains unclear [20]. In our study of some antibiotics, an increasing trend of AMR is seen. At the beginning of the pandemic, many researchers warned about the spread of antimicrobial resistance during and after the pandemic [80]. During the pandemic, there was also an increase in the consumption of antibiotics. On the other hand, during COVID-19 there was a huge increase in the usage of biocides, compounds with disinfectant, antiseptic, or even preservative properties [81], in both hospital settings and communities [82]. The overuse of the biocides may lead to an increase in AMR in many ways such as upregulation of the efflux pumps [83], plasma membrane modification [84], or even the induction of a viable but non culturable state that permits survival in unfavorable environmental conditions [85].