Ethics Statement
Usage of animal specimens in this study was approved by the Ethical Committee of the National Institute for Viral Disease Prevention and Control, China CDC under protocol 2009ZX10004-101. Animal housing and experimental protocols were in accordance with the Chinese Regulations for the Administration of Affairs Concerning Experimental Animals.
Preparation of brain homogenates
The brain specimens of the experimental rodents infected with various scrapie agents were enrolled, including 263K infected hamsters, 139A- and ME7-infected mice. The animal challenge of intracerebral inoculation was described previously[21-23] and the incubation periods of scrapie agent 263K infected hamsters, as well as 139A- and ME7-infected mice were 66.7±11 days, 183.9±23.1 days and 184.2±11.8 days, respectively. The brain tissues of the age-matched normal hamsters (80 days old) and normal mice (180 days old) were used as the control. Additionally, the brain tissues of 139A- and ME7-infected mice collected on 80-, 120-, 150-, 180-day post-inoculation (dpi) were recruited into this study, which represented early, middle-early, middle-late, and terminal stage, respectively.
According to the protocol described previously, to prepare the brain homogenates of mice and hamsters, the surgically removed brain samples were homogenized in cold lysis buffer (containing 100 mM NaCl, 0.5 % Nonidet P-40, 0.5 % sodium deoxycholate, 10 mM EDTA and protease inhibitor cocktail set III (Calbiochem)) after weighing (1g/10ml). Crude homogenates were spun shortly, and aliquots of the supernatants were immediately frozen at 80°C for subsequent experiments.
Preparation of paraffin sections of brain tissue
The surgically removed brains of normal and scrapie infected rodents were fixed with 4% paraformaldehyde at 4°C for 16 h, and then moved to an embedding box and rinsed under running tap water for 3 h. The fixed brain tissues were serially dehydrated and soaked in xylene for 1.5 h. The soaked tissue was embedded, and the tissue slices were prepared according to the routine neuropathological protocol.
Western blots
10% of brain homogenates were separated by 12% SDS-PAGE and electronically transferred to nitrocellulose membranes with a Semi-dry facility. After blocking with 5 % nonfat-dried milk in TBS at 37°C for 1 h, the membranes were incubated at 4°C overnight with specific monoclonal or polyclone antibody, including anti-NLRP3 (1:000 dilution, AG-20B-0014-C100, AdipoGen, Switzerland), anti-ASC (1:500 dilution, Santa Cruz, USA) and anti-Caspase1 (1:500 dilution, 06-503-I, Millipore, USA). After washing with TBST (containing 0.1 % Tween-20, pH7.6) for 4 times, the membranes were incubated with horseradish peroxidase-conjugated anti-mouse or anti-rabbit antibody (1:5000 dilution, 115-035-003/111-035-003, Jackson, USA). Immunoreactive signals were developed using an enhanced ECL kit (PE Applied Biosystems, Foster City, CA, USA). Images were captured by ChemiDocTM XRSC Imager (Bio-Rad, USA).
Immunoprecipitation (IP) assay
Magnetic beads were separately incubated with anti-NLRP3, mouse and hamster IgG on a vertical rotating mixer at 4°C for 4 h. After washed with PBST (PBS containing 0.05% Tween 20) for 5 times, various 10% brain homogenates with the total protein content of 100 μg were added and incubated at 4°C overnight on a vertical rotating mixer. The mixtures were washed with PBST for 5 times and the precipitated products were subjected into the Western blots with anti-ASC or anti-pro-Cas1 separately.
Immunofluorescence assay (IFA)
After incubated in the repair buffer (containing 0.4 g citric acid and 3 g trisodium citrate) and heated in microwave oven for 30 min, the brain sections were permeabilized with 0.3% Triton X-100 in PBS for 30 minutes and then blocked with normal goat serum for 1 h. The slices were incubated with different specific antibodies, including 1:100 diluted mouse anti-NLRP3, 1:200 diluted rabbit anti-GFAP (HPA056030, Millipore, USA), 1:200 diluted rabbit anti-NeuN (ab177487, Abcam, Britain) and 1:500 diluted rabbit anti-Iba1 (019-19741, WAKO, ) at 4°C overnight. After washing, the sections were incubated with 1:200-diluted Alexa Fluor 488-labeled goat-derived anti-rabbit (A11034, Invitrogen, USA) and Alexa Fluor 568-labeled goat-derived anti-mouse (A11031, Invitrogen, USA) secondary antibodies at 37°C for 1 h, and stained with DAPI (1mg/mL) at room temperature (RT) for 15 min. The slices were sealed and the images were viewed and analyzed using confocal laser microscope system (Leica TCS/SP8, Germany).
Quantitative real-time PCR (qRT-PCR)
Total RNAs from the brain tissues of 139A- and ME7-infected mice collected at end-stage and the age matched health mice were extracted with of the Total RNA Rapid Extraction Kit (R218, GeneBetter, China) according to the instructions of the manufacturer. The first-strand cDNA synthesis was conducted with commercial Script III RT MasterMix kit (P518, GeneBetter, China). The specific primers were designed based on the sequences issued in GenBank and summarized in Table 1. Real-time PCR was performed on a PCR instrument (ABI 7900HT, Applied Biosystems, USA) with the ChamQ Universal SYBR qPCR Master Mix (Q711-02, Vazyme, China). All PCR processes were performed in triplicate with a total of 40 cycles (30 s at 95 °C, 30 s at 60 °C, 60 s at 72 °C). The relative transcriptional level of mRNA was calculated by Ct method (2-ΔΔCt).
Table 1 Information of primers
Primer
|
Sequence (5' to 3')
|
mNLRP3-F
|
TGGAGACACAGGACTCAGGC
|
mNLRP3-R
|
CATTTCACCCAACTGTAGGC
|
mCaspase1-F
|
TGCCGTGGAGAGAAACAA
|
mCaspase1-R
|
ATGAAAAGTGAGCCCCTG
|
mASC-F
|
TCAGAGTACAGCCAGAACAGG
|
mASC-R
|
CTCCAGGTCCATCACCAAGT
|
mIL-1β-F
|
GATACTGCCTGCCTGAAGCTCTTG
|
mIL-1β-R
|
TGAAGCAGCTATGGCAACTGTTCC
|
mIL-18-F
|
AGTAAGAGGACTGGCTGTGACC
|
mIL-18-R
|
TTGGCAAGCAAGAAAGTGTC
|
mGSDMD-F
|
TGTCAACCTGTCAATCAAGGA
|
mGSDMD-R
|
AGCCAAAACACTCCGGTTC
|
mGAPDH-F
|
TTTGCAGTGGCAAAGTGGAG
|
mGAPDH-R
|
GATGGGCTTCCCGTTGATGA
|
ELISA
The brain homogenates were diluted to 500 μg/μl (total protein concentration) with a bicinchoninic acid protein assay kit (71285–3, Novagen, USA). The levels of IL-1β and IL-18 were separately measured with commercial enzyme-linked immunosorbent assay (ELISA) kits (EK0394 for IL-1β, EK0433 for IL-18, Boster, China) according to the manufacturer’s instruction.
Statistics
Quantitative analysis of immunoblot images was carried out using software ImageJ. The gray values of each target blot were evaluated. Data shown were means ± SD of triplicate samples from a single experiment and were representative of three independent experiments. Statistical analyses were conducted using Student’s t test. *: <0.05; **: <0.01; ***:<0.001.