Cell Culture
Human TNBC cell MDA-MB-231 originated from the Laboratory of Molecular Diagnosis, School of Laboratory Science, Ningxia Medical University; Human TNBC cell MDA-MB-468 was purchased from Pricella Company. In a constant temperature incubator at 37°C, human TNBC cells (MDA-MB-231 and MDA-MB-468) were cultured in a 5% CO2 environment using H-DMEM medium (Hyclone) containing 10% FBS (PAN), 1% penicillin mixture (Solarbio) and MDA-MB-468 (Pricella) and added to Merecidin when the cells were confluent to 90%. Conduct follow-up experiments.
Cell Transfection and Drug Administration
MDA-MB-231 and MDA-MB-468 cells were transfected with miR-30d-5p mimic (50 nM), mimic negative control (NC), miR-30d-5p inhibitor (50 nM), inhibitor NC, si-vimentin (2 µg), si-NC, pcDNA3.1-vimentin (2 µg) or empty pcDNA3.1 (all from GenePharma, Shanghai, China). Lipo2000 reagent (Thermo Fisher, USA) was used to facilitate the transfection. The following experiments were conducted 24 hours after 3 repeated transfection experiments.
Merecidin (purity > 98%) was obtained from GL Biochem Co., Ltd. (Shanghai, China). Cells were treated with Merecidin (5,10 µmol/L) 24 hours after transfection. The experiments were conducted 24 hours after the administration of Merecidin.
Cell Counting Kit-8 Assay
MDA-MB-231 cell suspension (100 µL per group) and MDA-MB-468 cell suspension (100 µL per group) were added into a 96-well plate, and each group used 3 wells. The cells were treated with 0, 2, 6, 10, 14, 18, 22, 26 and 30 µmol/L Merecidin for 24 hours, after which each well was added with 10 µL of Cell Counting Kit-8 (CCK-8) reagent (Tokyo, Dojindo, Japan). The cells were incubated for 1.5 hours before the absorbance value was measured at 450 nm. This is used to measure the inhibition rate of Merecidin on cells and the IC50 value. The drug inhibition rate can be calculated by [(A control-A treatment)/ (A control-A blank)] ×100%.
Plate cloning experiments
Collect MDA-MB-231 and MDA-MB-468 cell suspensions in the logarithmic growth phase, culture with medium at a concentration of Merecidn 5,10 µmol/L (treatment group) and medium without Merecidin (control group) for 24 hours at 37°C, then digest the cells, dilute the appropriate folds and suspend them into a single-cell suspension, and seed 2200 cells per well in a six-well plate, respectively. Continue incubating for 2–3 weeks (depending on cell growth status), solidified using 4% paraformaldehyde, stained with 0.1% crystal violet, and observe and count cell colonies with more than 60 cells under low magnification.
Scratch Assay
A suspension of MDA-MB-231 and MDA-MB-468 cells grown at the logarithmic phase was transferred to 6-well plates, cultured with medium at a concentration of 5,10 µmol/L of Merecidin (treatment group) and medium without Merecidin (control group) at 37°C for 24 hours, three parallel lines were drawn in each well with a sterile pipette (100 µL) to create cell wounds, floating cells were washed away by discarding the medium, complete medium containing 10% serum was added, photographed and recorded under low magnification, and returned to the incubator After continuing to culture for 24h (MDA-MB-231) and 48h (MDA-MB-468), respectively, the area of cell scratches was measured by ImageJ and the mobility of cells was calculated. Mobility = (0h width − 24h width) / (0h width) × 100%.cultured with medium at a concentration of 5,10 µmol/L of Merecidin (treatment group) and medium without Merecidin (control group) at 37°C for 24 hours, three parallel lines were drawn in each well with a yellow tip to create cell wounds, floating cells were washed away by discarding the medium, complete medium containing 10% serum was added, photographed and recorded under low magnification, and returned to the incubator After continuing to culture for 24h (MDA-MB-231) and 48h (MDA-MB-468), respectively, the area of cell scratches was measured by ImageJ and the mobility of cells was calculated. Mobility = (0h width − 24h width) / (0h width) × 100%.
Transwell Assay
Gently spread the 1:5 ratio diluted Matrigel matrix glue(CoringCostar) into the Transwell chamber(CoringCostar), wait 4 hours, and after the gel solidifies, collect the MDA-MB-231 and MDA-MB-468 cell suspensions in the logarithmic growth phase [incubate sequentially with Merecidin concentration of 5,10 µmol/L medium (treatment group) and Merecidin-free medium (control group) for 24 hours at 37°C], and add 1×105 cells to the upper chamber, 200µL per well, add 700µL of medium containing 10% serum to the lower chamber, put it into the incubator, incubate for 24h, take out the Transwell chamber, fix the cells with 4% paraformaldehyde, then stain with 0.1% crystal violet dye, and finally wash with PBS, and use a cotton swab to stain the cells that have not penetrated the upper chamber, take pictures and records under low magnification, and count the number of any ten field stained cells.
Western Blotting
Cells were added into Lysis buffer (KeyGEN Bio TECH, Jiangsu, China) containing protease inhibitors and phosphatase inhibitors. The cell lysates were centrifuged at 6000rpm, 4°C for 5 minutes. Tumor tissue homogenates were lysed on ice for 30 minutes. The tissue lysates were transferred into 1.5 mL tubes and centrifuged at 12 000 rpm, 4°C for 5 minutes. Protein samples were obtained after the centrifugation. GAPDH was used as the loading control. Protein concentration was measured using a BCA kit (KeyGEN Bio TECH) to ensure the same loading amount of each protein sample. The mixture of proteins and loading buffer was heated in boiling water for 10 minutes before 10% SDS-PAGE. The separation gel was prepared using the SDS-PAGE gel preparation kit (KeyGEN Bio TECH). The electrophoresis was maintained for 1 to 2 hours, during which the voltage was shifted from 80 V to 120 V when bromophenol blue entered the separation gel. The proteins were transferred onto a membrane in an ice bath (300 mA, 60 minutes). The membrane was then rinsed for 1 to 2 minutes and immersed in blocking buffer at room temperature for 60 minutes. Primary rabbit anti-human antibodies against GAPDH (5174S, 1:1000, Cell Signaling Technology, USA), E-cadherin (3195, 1:1000, Cell Signaling Technology),Snail (3879, 1:1000, Cell Signaling Technology), vimentin (5741, 1:1000, Cell Signaling Technology) were incubated with the membrane on a shaker at 4 ℃ overnight. The membrane was washed 3 × 6 minutes before the proteins were incubated with HRP conjugated secondary antibody (goat anti-rabbit IgG, 1:5000, Cell Signaling Technology) at room temperature for 1 hour. The membrane was washed 3 × 10 minutes and added with chemiluminescence fluid. Protein expression was detected using a chemiluminescence imaging system (Bio-Rad, Hercules, CA, USA).
Quantitative Reverse-Transcriptase Polymerase Chain Reaction
Total RNA of tumors or cells from each group was extracted using Total RNA small preparation kit (CoringCostar, USA), followed by concentration and purity tests. Qualified RNA samples were adjusted to an appropriate concentration and reverse-transcribed using a reverse transcription kit (TransGen Biotech, Shanghai, China) and random primers. Gene expression was detected by the Real-time PCR system (Thermo Fisher, USA) under the conditions provided by the PCR kit (SYBR Green Mix, TransGen Biotech). The template DNA was predenatured at 94°C for 30 seconds, followed by 40 cycles of denaturation (94°C, 5 seconds), annealing (61.5°C, 15 seconds) and extension (72°C, 10 seconds). Each RNA sample had 3 duplicates. The internal reference genes for miRNA and mRNA were U6 and glyceraldehyde 3-phosphate dehydrogenase (GAPDH), respectively. The 2-ΔΔCt method was used for data analysis. Primers used in the polymerase chain reaction (PCR) are listed in Table 1.
Table 1
Name of primer | sequences(5´→3´) |
miR-30d-5p F | TGTAAACATCCCCGAC |
miR-30d-5p RT | GTCGTATCCAGTGCAGGGTCCGAGGTATTCGCACTGGATACGACCTTCCA |
VIM F | CCTTCGTGAATACCAAGACCTCCTC |
VIM R | AATCCTGCTCTCCTCGCCTTCC |
Reverse universal primers | GTGCAGGGTCCGAGGT |
Dual-Luciferase Reporter Assay
The binding sites between miR-30d-5p and VIM mRNA were predicted by TargetScan (http://www.targetscan.org/vert_72/). Wild and mutant sequences of the binding site on VIM (wt-VIM and mut-VIM) were designed and synthesized according to the information provided by TargetScan. The luciferase reporter vectors (pGL3-Promoter, RiboBio, Guangzhou, China) were inserted with wt-VIM or mut-VIM and transfected into MDA-MB-231 cells with 50 nM miR-30d-5p mimic or mimic NC. The cells were accordingly designated as mimic + mut-VIM, mimic + wt-VIM, mimic NC + mut-VIM and mimic NC + wt-VIM groups. The luciferase activity was detected using a dual-luciferase reporter assay kit (TransGen Biotech) and averaged after 3 repeats.
Laser confocal microscopy to observe positioning
The collected MDA-MB-231 cell suspension was seeded on a cell climbing tablet of a 24-well plate, incubated with medium containing 10 µmol/L FITC-Merecidin (treatment group) and medium containing 10 µmol/L FITC-RI-10 (control group) for 12 hours at 37°C, then discarded the medium, carefully cut out the cell climbing sheet, and under dark conditions, take 5 µL of anti-fluorescence attenuation mounting agent (containing DAPI) drop on a clean slide, and lightly cover the cell climbing sheet. Allow the cells to fully contact the mounting solution and subsequently observe by laser confocal microscopy.
Lactate dehydrogenase (LDH) experiment
The collected MDA-MB-231 cell suspension was seeded in a 96-well plate with 200 µL per well, 1.5×104 cells, incubated overnight at 37°C, and then Merecidin at a concentration of 5, 10, 15 µmol/L was added sequentially as the experimental group, the cell group without Merecidin was the control group, the highest enzyme activity control group, and the cell-free culture group was used as the blank group, each group had 3 complex wells, and incubated at 37°C, 5% CO2 for 12 hours. Take out the 96-well plate from the incubator 1 hour in advance, add 20 µL of LDH release reagent to the control group with the highest enzyme activity, mix well, then place it in the incubator, continue to culture for 1h, take out the 96-well plate, centrifuge 400 g for 5 minutes, add 120 µL of supernatant to a new 96-well plate, and add 60 µL of LDH detection working solution, mix well, incubate at room temperature in the dark for 30 minutes, and then measure the absorbance value at 490 nm. Dual-wavelength assays were performed at 600 nm as the reference band to calculate the relative activity of lactate dehydrogenase. Lactate dehydrogenase relative activity = (Atreatment - Ablank) / (Ahighest enzyme activity control - Ablank) × 100%.
Pull Down Assay
The Protein Pull-Down Kit (Thermo Fisher, USA) was used for this assay. Biotin-Merecidin(1mg/mL) 200 µL was added into Streptavidin reagent, After mixing, incubate at 4°C for 3 hours, centrifuge at 1250×g for 1minute in a low-speed shaker. Add 250 µL of biotin blocking solution to the spin column, invert the column for 3–5 times to mix, stand at room temperature for 5minutes, centrifuge at 1250×g for 1minute, Add 200 µL of MDA-MB-231 cell protein (0.6 mg/mL) to the spin column, add the same volume buffer to the centrifuge column designated as the positive control, mix well and incubate at 4°C in a low-speed shaker for 4 hours, centrifuge at 1250×g for 1minute, Add 250 µL of wash buffer to the spin column, gently invert the column for 5–7 times to mix, let stand at room temperature for 1 minute, centrifuge at 1250 ×g for 1 minute, repeat 3 times, and collect the effluent. Add 50 µL of elution buffer to the centrifuge column, add 2 µL of neutralization buffer in advance to the corresponding collection tube, then gently flip the column, mix 5–7 times, and finally stand at room temperature for 5 minutes, centrifuge at 1250×g for 1 minute, recover the effluent and label "Elution C". Repeat 1 time and collect the effluent labeled "Elution D". The Elution was detected by SDS-PAGE electrophoresis. Banded strips were digested by mass spectrometry.
Animal Experiments
Specific pathogen-free (SPF) BALB/c nude mice (n = 28, 4 weeks, 16 ± 2g) were purchased from Beijing HFK Bioscience Co., Ltd. (Beijing, China). All animals were raised with standard food and water in a SPF laminar flow room at 22 to 26°C with 55% ± 5% humidity for at least 1 week. The raising environment was provided with 12/12-hour light-dark cycles. All animal experiments com plied with the regulations and ethic requirements for management of laboratory animals. The mice were randomized into 3 groups: PBS, paclitaxel and Merecidin groups (4 mice per group). MDA-MB-231 cells (1 × 106 ) were suspended in 100 µL of PBS-Matrigel (1:1, v/v) and subcutaneously injected in the right axilla of nude mice to establish subcutaneous tumor model of TNBC. The syringe was slowly pulled out after injection and the injection area was pressed with an alcohol cotton ball for 10 seconds to prevent effusion of cell suspension. The Merecidin group was given Paratumoral injection of Merecidin (200 mg/ kg) daily until the implanted tumor grew to 100 mm3. The paclitaxel group was given Paratumoral injection of paclitaxel (200 mg/ kg) daily. The PBS group was injected with equal volume of normal PBS. The tumor volume was measured every 7 days (tumor volume = 1/2 × long diameter × short diameter2 ). The mice were sacrificed 4 weeks after the injection. The tumor weight was measured and the tumors were photographed.
Immunohistochemistry
Tumor tissues were fixed in 4% paraformaldehyde for 48 hours and made into paraffin sections (4 µm). The sections were roasted for 20 minutes, dewaxed with routine xylene and washed with distilled water. After being washed 3 times with PBS, the sections were incubated with 3% H2O2 at room temperature for 10 minutes and washed 3 times with PBS, followed by heat-induced antigen retrieval and another round of PBS washing. Normal goat serum was used for blocking nonspecific binding at room temperature for 20 minutes before the sections were incubated with anti-Vimentin antibody (ab16667, 1:200, Abcam, Cambridge, MA, USA) at 4°C overnight. The sections were washed 3 times with PBS and incubated with secondary antibody at room temperature for 1 hour. Following PBS washing, the sections were stained in DAB solution for 1 to 3 minutes and in hematoxylin for 3 minutes. The sections were dehydrated, transparentized, and mounted for observation of Vimentin positive cells under a microscope.
Statistical Analysis
Data were analyzed in GraphPad 7.0 and shown in a form of mean ± SD. A t test and one-way analysis of variance were used for 2-group and multigroup comparisons, respectively. Significant statistics were represented by P < 0.05.