Animals
In this study, 3-month-old adult male APP/PS1 (APPswe, PSEN1dE9) double transgenic mice and age-matched wild-type mice were purchased from Hangzhou Ziyuan Laboratory Animal Technology Co., Ltd. (Hangzhou, China). Mice were housed in a specific pathogen-free environment (22 ± 3°C; humidity, 55 ± 5%) under a light/dark cycle of 12:12. Food and water were available ad libitum. All animal protocols were approved by the Experimental Animal Ethics Committee of Wenzhou Medical University (Approval No. wydy2022-0375).
Experimental design
The experimental design of the study is presented in Fig. 1A. After one month of standard housing conditions, experimental mice were randomly divided into 3 groups (n = 8 mice for each group): WT group, APP/PS1 group, and APP/PS1 + FMT group. All experimental mice were given 200 µl of the four antibiotics (200 mg/L neomycin, 200 mg/L ampicillin, 200 mg/L metronidazole, and 100 mg/L vancomycin) [28] daily for one week to eliminate the initial intestinal microorganisms. After one week of antibiotic treatment, mice in the APP/PS1 + FMT group received a daily oral gavage of 200 µL of freshly prepared fecal resuspension from WT mice for 4 weeks. Mice in the WT and APP/PS1 groups received an equivalent volume of saline. After 4 weeks, fresh fecal samples from all mice were collected and stored at -80°C. Mice were sacrificed at the end of the behavioral experiments and tissues were collected.
FMT procedure
Fresh fecal samples from wild-type mice were collected daily and dissolved in sterile saline at a 1:5 (W/V) ratio. The mixture was then filtered sequentially through a series of filters with pore sizes of 1.0, 0.5, and 0.25 mm. After filtration, the collected liquid was centrifuged at 4000 x g for 5 min. The supernatant was collected as gavage fluid.
Morris water maze (MWM) test
The MWM test was conducted to evaluate the spatial learning ability and memory capacity of mice. The experimental setup included a circular water tank (100 cm in diameter, 50 cm in height, and 30 cm deep) and a removable platform that was hidden 1 cm underwater. The water temperature was maintained at 18–22°C. Each day, mice were introduced into the pool from various starting positions within the four quadrants. Training sessions were carried out four times daily over a span of five days, and each session was performed at 30-min interval. The objective of the training was to locate the submerged platform. The instrument automatically calculated the time taken to reach the platform for the first time within 1 min. If mice did not reach the platform in the allocated time, they were directed to the submerged platform and forced to stand there for 10 sec. The invisible platform was removed on the last day. Mice were positioned farthest away from the target platform and allowed to swim freely in the tank for 60 sec. The number of platform crossings and the path length were recorded using computer video analysis software (Shanghai Jiliang Software Science & Technology Co., Ltd., Shanghai, China).
Congo red staining and Nissl staining
Adult mice were anesthetized after the behavioral experiment, and they promptly received phosphate-buffered saline (PBS, pH 7.4), followed by 4% paraformaldehyde for cardiac perfusion. Tissue samples fixed with 4% paraformaldehyde were sequentially immersed in ethanol with varying concentrations: 70% for 12 h, 80% for 1 h, 90% for 1 h, 95% for 1 h, 95% for 1 h, 100% for 1 h, and 100% for 1 h. Subsequently, they were subjected to two cycles of 100% xylene, each lasting for 15 min, followed by incubation in soft wax I and soft wax II, each for 1 h, and finally embedded into hard wax. Tissues were paraffin-embedded and cut into 5-µm sections for further staining experiments. Slides were dewaxed at 65°C for 2h, xylene I for 5 min, xylene II for 5 min, ethanol (100%) for 2 min twice, ethanol (100%) for 2 min, ethanol (95%) for 2 min, ethanol (80%) for 2 min, ethanol (70%) for 2 min, ethanol (50%) for 2 min, and distilled water for 2 min.
Congo red staining: Highman Congo red staining solution (G1535, Solarbio, Beijing, China) was applied to brain tissue slices for 10 min, followed by utilization of alkaline differentiation solution for 10 sec. The differentiation was terminated by placing the sections in water, followed by rinsing them with running water. Subsequently, the sections were immersed in Lillie-Mayer hematoxylin staining solution for 2 min, rinsed slightly with running water, and washed with distilled water to achieve a blue differentiation. The sections were then dehydrated through an ethanol gradient, made transparent with xylene, and finally sealed with resin. The quantification of amyloid plaques was conducted under a microscope.
Nissl staining: The 5 µm-thick brain tissue sections were initially deparaffinized following the previously outlined protocol. Subsequently, they were stained for 1 h at 56°C using a cresyl violet staining solution (G1430, Solarbio). The stained sections were then washed with deionized water, subjected to differentiation for approximately 2 min using differentiation solution, rapidly dehydrated with absolute ethanol, cleared in xylene, and finally sealed with resin. Microscopy was used to count the number of amyloid plaques and Nissl bodies.
Hematoxylin-eosin (HE) staining and Alcian blue-nuclear-fast red staining
HE staining:
The paraffin-embedded colon tissue was sectioned into 5 µm-thick slices, which were then subjected to the following steps: dewaxed at 65°C for 2 h, treated with xylene I for 5 min, followed by xylene II for further 5 min. The sections were subsequently immersed in ethanol (100%) for 2 min (repeated twice), ethanol (100%) for 2 min, ethanol (95%) for 2 min, ethanol (80%) for 2 min, ethanol (70%) for 2 min, 50% ethanol for 2 min, and finally distilled water for 2 min. They were then stained with hematoxylin (C0105S-2; Beyotime, Shanghai, China) for 10 min, rinsed with tap water for 10 min, distilled water for 30 sec, and fractionated in a hydrochloric acid ethanol fractionation solution for 30 sec. After rinsing with running water for 10 min and distilled water for 30 sec, the sections were sequentially immersed in ethanol (50%) for 2 min, ethanol (70%) for 2 min, ethanol (80%) for 2 min, and ethanol (95%) for 2 min. Following this, they were stained with eosin (C0105S-1; Beyotime) for 10 sec and subsequently treated with ethanol (95%) for 2 min (repeated twice), and ethanol (100%) for 2 min (also repeated twice). The sections were then cleared using xylene and finally sealed with resin. Under the microscope, histomorphological changes were observed and the tissue was evaluated according to the criteria [29].
Alcian blue-nuclear-fast red staining: The 5 µm-thick sections were subjected to the dewaxing process as previously described, followed by immersion in ethanol (100%) for 5 min, ethanol (90%) for 2 min, ethanol (80%) for 2 min, and ethanol (70%) for an additional 2 min. The rehydrated slides were placed in a wet box, stained for 1 h with 100 µL Alcian blue staining solution (C0155S, Beyotime), thrice rinsed with distilled water, and subsequently stained with 100 µL nuclear solid red staining solution for 10 min. The staining solution was carefully removed, and the sections were subsequently rinsed with tap water for 5 min. They were sequentially immersed in ethanol (70%) for 10 sec, ethanol (80%) for 10 sec, ethanol (90%) for 10 sec, and finally ethanol (100%) for 10 sec. Following this, the sections were made transparent by submersion in xylene for 1 min before being sealed with resin. Densitometric analysis of the Alcian blue-positive area in the colon was carried out under a microscope.
Quantitative reverse transcription polymerase chain reaction (RT-qPCR)
RNA was extracted from hippocampal and colonic tissues of mice using the RNAiso Plus reagent (9109; TaKaRa, Beijing, China). For reverse transcription, the PrimeScript™ RT kit with gDNA Eraser (RR047A, TaKaRa) was utilized, and TB Green ® Premix Ex Taq™ II (RR820A, TaKaRa) was used to detect inflammatory genes. The specific paired primers synthesized by Beijing Qingke Biotechnology Co., Ltd. (Beijing, China) were summarized as follows: tumor necrosis factor-α (TNF-α):5′-TGAGATCCATGCCGTTGGC-3′ (antisense),5′-CACGTCGTAGCAAACCACC-3′(sense);interleukin-6(IL-6):5′-AAGTGCATCATCGTTCATACA-3′ (antisense),5′-AGGATACCACTCCCAACAGACC-3′ (sense); interleukin-1β(IL-1β): 5′-TGCTGCGGGATTTGAAGCTG-3′ (antisense),5′-AATGCCACCTTTTGACAGTGAT-3′ (sense); β-actin: 5′-CGCTCGTTGCCAATAGTG-3′(antisense),5′-GCTGTGCTATGTTGCTCTAG-3′ (sense). The CFX96TMReal-Time system (Bio-Rad Laboratories Inc., Hercules, CA, USA) was used to detect the expression levels of inflammatory genes in colonic and hippocampal tissues. The RT-qPCR was conducted under the following conditions: pre-denaturation at 95°C for 30 sec, followed by 40 cycles of denaturation at 95°C for 5 sec, and annealing/extension at 60°C for 30 sec. The relative expression of inflammatory factor mRNA was calculated by the 2−ΔΔCt method.
Enzyme-linked immunosorbent assay (ELISA) for cytokine detection
Eyeballs were removed from mice to collect blood, and the separated plasma was stored at -80°C for later use. ELISA kits (Dakewe Biotech Co., Ltd., Shanghai, China) were utilized for testing inflammatory factors, such as IL-6 (Cat#:1210602), IL-1β (Cat#:1210122), and TNF-α (Cat#:1217202). Experiments were performed according to the manufacturer’s instructions. Readings were taken with a multifunctional enzyme marker (SpectraMax M5; Molecular Devices Shanghai Co., Ltd., Shanghai, China) at the wavelength of 450 nm.
Western blotting
Hippocampal and colonic tissues were lysed for 10 min in lysis buffer (Beyotime), and the recovered protein supernatant was centrifuged at 12,000 g for 20 min. The BCA Protein Concentration Assay kit (P0010, Beyotime) was utilized to measure protein concentration in tissues. Protein samples were separated from well-prepared SDS-PAGE gel and electro-transferred at a low temperature to PVDF membranes (Merck Millipore Ltd., Darmstadt, Germany). Membranes were shaken for 2 h in 5% skim milk before being incubated overnight at 4°C with the primary antibody. The membranes were subsequently incubated for 2 h with secondary antibodies (horseradish peroxidase-labeled goat anti-mouse IgG (H + L) (1:2500, A0216, Beyotime) and horseradish peroxidase-labeled goat anti-rabbit IgG (H + L) (1:2500, A0208, Beyotime). Proteins were detected using the Ultrasensitive ECL Chemiluminescence kit (P10100, New Cell & Molecular Biotech Co., Ltd., Beijing, China), and band densities were analyzed by a Chemiluminescent imaging system (Bio-Rad Laboratories Inc.).
The following primary antibodies were utilized: anti-ZO-1 (1:1000, AF5145, Affinity), anti-Occludin (1:1000, R1510-33, HUABIO), anti-Claudin 1 (1:1000, RT1141, HUABIO), anti-TLR4 (1:1000, A5258, ABclonal), anti-MyD88 (1:1000, AF7524, Beyotime), anti-NF-κB p65 (1:5000, CY5034, Abways), anti-COX-2 (1:1000, db8534, Diagbio), anti-IL-6 (1:1000, db7166, Diagbio), anti-IL-1β (1:1000, AF5103, Affinity), anti-TNF-α (1:1000, AF7014, Affinity), anti-APP (1:1000, AF6219, Beyotime), anti-p-Tau (1:1000, ET1611-68, HUABIO), β-Actin (1:3000, AB0035, Abways), and GAPDH (1:2000, db106, Diagbio).
Microbial community diversity sequencing
Fresh mouse fecal samples were aseptically collected in sterile EP tubes, and DNA was extracted using the OMEGA Soil DNA kit (M5636-02) from Omega Bio-Tek (Norcross, GA, USA). Subsequently, the V3-V4 regions of fecal microbial genes were amplified with primers (Forward: ACTCCTACGGGAGGCAGCA, Reverse: GGACTACHVGGGTWTCTAAT). Paired-end sequencing of community DNA fragments was conducted on the Illumina NovaSeq platform, which was provided by Shanghai Personalbio Technology Co., Ltd. (Shanghai, China). Data preprocessing, including de-priming, quality filtering, denoising, sequence splicing, and chimera removal, was executed using the DADA2 method[30]. Each sequence obtained after de-duplication and quality control with DADA2 was defined as a signature sequence, representing the OTU sequence. Bacterial gene annotation and subsequent taxonomic analysis were carried out by Shanghai Personalbio Technology Co., Ltd.
Gas chromatography-mass spectrometry (GC-MS) analysis of metabolites
The sample was placed in a 1.5 mL centrifuge tube containing 500 µL of water and 100 mg of glass beads. It was agitated for 1 min and subsequently centrifuged for 10 min at 12,000 rpm. The resulting supernatant was thoroughly mixed with a solution consisting of 15% phosphoric acid (100 µL), an internal standard (4-methylvaleric acid) solution at a concentration of 375 µg/mL (20 µL), and ether (280 µL). After another 10-min centrifugation at 12,000 rpm (at 4°C) [31], the supernatant was prepared for machine analysis. The Trace 1300 gas chromatograph (Thermo Fisher Scientific, Waltham, MA, USA) was employed for the analysis. An Agilent HP-INNOWAX capillary column (30 m × 0.25 mm ID × 0.25 µm) was used. The sample was injected with a split flow of 1 µL and a split ratio of 10:1.
The instrument was programmed to begin at 90°C, increase to 120°C at a rate of 10°C/min, then to 150°C at a rate of 5°C/min, and finally to 250°C at a rate of 25°C/min, where it was maintained for 2 min. Helium was utilized as the carrier gas with a flow rate of 1.0 mL/min. Metabolite analysis was carried out using a Thermo ISQ 7000 mass spectrometer (Thermo Fisher Scientific) operating in the electron impact ionization mode with an electron energy of 70 eV [32, 33]. Calibration curves were created by plotting the concentrations of the standards along the X-axis and representing the ratio of the peak areas of the standards to the internal standards along the Y-axis. These calibration curves were used to quantitatively determine metabolite concentrations of all samples.
Cell culture
FHC cells and BV2 microglia were cultured in a CO2 incubator at 37°C in a Dulbecco's modified Eagle’s medium supplemented with 10% fetal bovine serum (FBS) and a 1% penicillin-streptomycin solution (100×). Various concentrations of sodium propionate (SP) were applied to the cells, and the final concentration was determined using the cell counting kit-8 (CCK-8) assay. Subsequently, SP doses were administered to cells induced by LPS, and the levels of proteins related to the NF-κB inflammatory signaling pathway and inflammatory factors were determined through Western blot analysis.
Statistical analysis
GraphPad Prism 8.0 software (GraphPad Software, Inc., San Diego, CA, USA) was used to perform the statistical analysis, and data were expressed as the mean ± standard deviation (SD) of the mean of at least three independent experiments. All datasets were tested for normal distribution by the Shapiro-Wilk test. For normally distributed data, one-way analysis of variance (ANOVA) was used to determine significant differences among the three groups, followed by Tukey's multiple comparisons test. If one or more groups in the one-way ANOVA dataset deviated from a normal distribution, Kruskal-Wallis test was conducted, followed by Dunn’s multiple comparisons. In the analysis of variations in metabolites between groups, two-tailed unpaired t-test was applied when both datasets adhered to a Gaussian distribution. In addition, repeated measures ANOVA was performed on the escape latency data from the MWM test. P-value less than 0.05 was considered statistically significant. Microbiome bioinformatics was conducted using the QIIME2 2019.4 system[34] with slight modifications. The sequence data analysis was carried out by the QIIME2 and the R package (ver. 3.2.0).