Mice
Nr4a3 conditional knockout mice in a C57BL/6 background were generated by CRISPR/Cas-mediated genome engineering (fig. S1). The Nr4a3 gene (NM_015743.3) is located on mouse chromosome 4. Nr4a3 has identified 8 exons, among which exon 3 is the ATG start codon and exon 8 is the TGA stop codon. Exon 4 and flanking sequences on both sides of it were replaced by the "exon 4-8-2A-LacZ-polyA-loxP intron 3-CDS loxP endogenous SA" box. To engineer the targeting vector, BAC clones were used as templates to generate homology arms and cKO regions by PCR. Then Cas9, gRNA and targeting vector were co-injected into fertilized eggs to produce F0 Nr4a3flox/+ (abbreviated as Nf/+) mice. Nf/+ mice were crossed to obtain Nf/f mice. After mating Nf/f mice with transgenic mice expressing a tamoxifen-inducible Cre recombinase protein fused to a mutant estrogen-receptor ligand binding domain driven by α-myosin heavy chain promoter (Myh6-CreERT2, abbreviated as Myh6-Cre), Nf/+Myh6-Cre+ and Nf/+Myh6-Cre− mice were obtained. Thereafter, Nf/+Myh6-Cre+ mice were crossed to Nf/f mice to obtain Nf/f Myh6-Cre+ (we brief called Nf/f Cre+) mice. Nr4a3 was knockout specifically in cardiomyocytes of Nf/f Cre+ mice by tamoxifen treatment. Nf/f Cre− littermates were used as control mice.
We generated α-MHC-Nr4a3 transgenic mice by using the PiggyBAC transposase system (fig. S2). A targeting vector comprises right arm, α-MHC promoter, Nr4a3 cDNA, P2A, BGH polyA and left arm sequences. The target fragment was cloned into the PiggyBAC transposon plasmid and injected into a fertilized mouse egg together with the transposase. Under the action of the transposase, the target fragment was integrated into the TTAA site in the genome to obtain the transgenic mouse.
To generate conditional Nr4a3 overexpressing mice, we first created Nr4a3 flox/flox mice using CRISPR/Cas9 technology to insert the CAG promoter-loxp-stop-loxp-Nr4a3-flag-WPRE-polyA expression cassette at the Rosa26 locus by homologous recombination (fig. S3). A targeting vector was constructed using In-Fusion cloning, which contains a 3.3 kb 5' homology arm, a CAG promoter, a loxp-stop-loxp, a Nr4a3-flag-WPRE-polyA and a 3.3 kb 3' homology arm. The Cas9 mRNA, gRNA and donor vector were microinjected into fertilized eggs of C57BL/6J mice to obtain F0 mice. The loxp-stop-loxp expression cassette prevents transcription of the downstream target gene, Nr4a3. After mating this line with transgenic mice expressing a tamoxifen-inducible Cre recombinase protein fused to a mutant estrogen-receptor ligand binding domain driven by α-myosin heavy chain promoter (Myh6-CreERT2, abbreviated as Myh6-Cre), high expression of Nr4a3 was achieved specifically in cardiomyocytes by tamoxifen treatment. All three mutant mice were generated by Shanghai Biomodel Organism Science & Technology Development Co. Ltd. in Shanghi, China.
This study and all animal procedures conformed to the Guide for the Care and Use of Laboratory Animals, published by the US National Institutes of Health (NIH publication no. 85-23, revised 1996) and were approved by the Animal Care Committee of Ruijin Hospital, Shanghai Jiaotong University School of Medicine.
In vivo myocardial ischemia reperfusion (IR) protocol
Surgical induction of myocardial IR was performed as previously described 36. Briefly, mice were lightly anesthetized with diethyl ether, intubated, and fully anesthetized with 1.0–1.5% isoflurane gas, and the mechanical ventilation was performed with a rodent respirator. Left thoracotomy was performed, and the left anterior descending (LAD) coronary artery was visualized using a microscope and ligated at the site of its emergence from the left atrium, using 8-0 silk suture around fine PE-10 tubing with a slipknot. Complete occlusion of the vessel was confirmed by the presence of myocardial blanching in the perfusion bed. Mice underwent 2-hour long LAD ischemia followed by different periods of reperfusion. Sham-operated animals were subjected to the same surgical procedures, except that the suture was passed under the LAD artery, but not tied.
Infarct size and infarct wall thickness determination
Heart tissue samples were fixed in 4% paraformaldehyde, embedded in paraffin, and cut into 5 μm-thick sections. Hematoxylin and eosin (H&E) and Masson's trichrome staining of the paraffin-embedded sections were performed to determine the morphological effects and infarct size, with the latter calculated as total infarct circumference divided by total LV circumference × 100, as described previously 13, 36. The wall thickness of the scars was measured as well. Myocardial fibrosis was quantified by morphometric analysis with Masson’s trichrome stained sections; mean fibrotic area was calculated from 10 - 12 areas per heart section, which were analyzed at 200X magnification.
Infarct size assessment
To assess infarct size by TTC (2,3,5-triphenyltetrazolium chloride) staining, the LAD artery was re-occluded at the previous ligation, and 1 mL of 1% Evans blue (Sigma-Aldrich, St. Louis, MO, USA) was injected into the LV cavity. The heart was quickly excised, washed twice, immediately frozen, and sliced at a 1-mm thickness. These sections were incubated in 1% TTC (Sigma-Aldrich) solution and digitally photographed. LV area and infarct area were determined by computerized planimetry and comprehensively analyzed in serial sections for each mouse. These data were analyzed using Image J software (version 1.38×, National Institutes of Health).
Echocardiographic analysis of cardiac function
Transthoracic echocardiography was performed with a Vevo 2100 instrument (VisualSonics, Toronto, Ontario, Canada) equipped with an MS-400 imaging transducer. Mice were slightly anesthetized with isoflurane in a box and then were gently fixed on the echo pad in a supine position without additional anesthesia. Mice were kept awake during the echocardiographic examination to minimize data deviation and heart rate was maintained at approximately 550–650 bpm in all mice. B-mode tracings of the LV endocardial border in a parasternal long axis were conducted to directly evaluate LV end-diastolic volume (LVEDV) and LV end-systolic volume (LVESV). The LV ejection fraction (EF) was calculated following the formula: EF = [(LVEDV-LVESV)/LVEDV] × 100. M-mode tracings were recorded through the anterior and posterior LV walls of the papillary muscle to measure LV end-diastolic dimension (LVEDD) and LV end-systolic dimension (LVESD). LV fractional shortening (FS) was calculated according to the following formula: FS = [(LVEDD-LVESD)/LVEDD] × 100. Echocardiographic acquisition and analysis were performed by a technician who was blinded to the treatment groups.
Isolation neonatal and adult cardiomyocytes and non-myocyte fraction cells
Neonatal cardiomyocytes were isolated from 1-day old neonatal rats by enzymatic digestion 37. Briefly, ventricles were extracted, cut into pieces and then dissociated digested in calcium and magnesium-free Hanks buffer containing Collagenase II (1mg/ml, 37 °C water bath) under gentle agitation. Digestion was performed in 10-min steps, collecting the supernatant to equal amount of DMEM with 10% FBS after each step. The collected supernatant was passed through a cell strainer (70 µm, BD Falcon) and then centrifuged to separate the cells, which were then resuspended in DMEM with 5% FBS and with penicillin and streptomycin. The collected cells seeded onto uncoated 100-mm plastic dishes for 2 h at 37 °C in 5% CO2 and humidified atmosphere. The supernatant composed mostly of cardiomyocytes, was then collected, pelleted and resuspended in DMEM with 10% FBS, counted and plated at the appropriate density.
Adult cardiac myocytes and non-myocyte fraction cells from mouse heart were isolated according to a Langendorff-free procedure 38. Non-myocyte fraction cells were incubated on ice for 30 min with the appropriate combination of fluorochrome-conjugated antibodies diluted in FACS buffer: CD45-BV421 (1:300, Biolegend, Cat:103134), CD31-PE (1:300, Biolegend,Cat:102419), gp38-APC (1:100, Biolegend,Cat:127410), Zombie Aqua™ Fixable Viability Kit (1:100, Biolegend,Cat:423101) was used to distinguish live/dead cells. Cells were sorted with the FACSAria III 4L (BD Biosciences): CD45+ population were leukocyte, the endothelial cells were CD45-CD31+ and fibroblasts were defined as a CD45−CD31−gp38+ population.
Quantitative real-time PCR
Total RNA samples from cultured cells and tissues were prepared using an RNeasy Mini Kit (Qiagen) or Trizol reagent (Invitrogen) according to the manufacturer’s instructions. A first-strand cDNA synthesis kit (Invitrogen) was used for cDNA synthesis. Quantitative real-time PCR was performed using an ABI Prism 7700 sequence detection system (Applied Biosystems). Predesigned gene-specific primer and probe sets were used for q RT-PCR amplification and detection (TaqMan Gene Expression Assays, Applied Biosystems) and 18S ribosomal RNA levels were used as an internal control. Each reaction was performed in duplicate and the changes in relative gene expression normalized to the internal control levels were determined using the relative threshold cycle method.
Western blotting
Heart tissue samples or cultured cells were homogenized in lysis buffer containing proteinase and a phosphatase inhibitor cocktail. The protein concentration was determined with a BCA protein assay kit (Bio-Rad). Nr4a3 (H7833, R&D), Caspase-3 (#9662, CST), Cleaved-caspase3 (#9661, CST), Bnip3 (#3769, CST) were detected with specific antibodies. Histone-H3 (4499, CST) was used as a nuclear protein control, VDAC (#4866, CST) was used as a mitochondrial protein control, GAPDH (60004-1-1g, Proteintech) and α-tubulin (T9026, Sigma) levels were used as total protein internal controls.
Assessment of necrotic and viable cardiomyocytes
Necrotic cells were labeled by Evans Blue Dye (EBD) due to increased membrane permeability, as described previously 15. Evans Blue was dissolved in PBS (10 mg/ml) and intraperitoneally injected into mice (100 μg/g body weight). 12 hours later, the mice were subjected to 2-hour long LAD ischemia followed by 24 hours reperfusion. Then, mice were sacrificed, and heart was harvested and embedded in OCT (Sakura), snap frozen in liquid nitrogen and cut into 8-μm cryosections. Immunohistochemistry was performed with anti-CaV3 antibody (Abcam, ab2912). The necrotic cells were labeled by Evans blue dye and viable cardiomyocytes were labeled by caveolin 3 (CaV3) antibody. The Images were acquired with Zeiss Axio Scan.Z1.
Immunohistochemistry
Immunofluorescence analysis was performed on the paraffin-embedded sections of heart tissue or cultured cells fixed with 4% paraformaldehyde as described previously 36. The sections were incubated with primary mouse monoclonal anti-Nr4a3 (#H7833, R&D), goat polyclonal anti-Hsp60 (AP22882PU-N, OriGene), rabbit monoclonal anti-Bnip3 (ab109362, Abcam), and mouse monoclonal anti-α-actinin (A7811, Sigma-Aldrich) antibodies overnight at 4°C. The sections were then incubated with the appropriate Alexa-Fluor-coupled secondary antibodies for 1 h at room temperature and counterstained with DAPI. Images were acquired with ZEISS LSM710 confocal and Olympus BX61 microscopes, and analyzed using ImageJ software (version 1.38×, National Institutes of Health).
Calcein-am/PI and TUNEL staining
Calcein-am/PI staining was performed with Live/Dead Cell Double Staining Kit (04511-1KT-F, Merck) following the manufacturer's instructions. Calcein-AM only stains viable cells. PI reaches the nucleus by passing through disordered areas of dead cell membrane, and intercalates with the DNA double helix of the cell to emit red fluorescence. TUNEL staining was performed with In Situ Cell Death Detection Kit-Fluorescein (Cat. 11684795910, Roche) following the manufacturer's instructions. Sections or cell slides were counterstained with DAPI. Images were acquired with an ZEISS LSM710 confocal microscope and analyzed using ImageJ (version 1.38×, National Institutes of Health).
Mitochondrial transmembrane potential and mPTP opening detection
Neonatal rat ventricular myocytes (NRVM) were cultured on glass-bottomed culture dishes with or without hypoxia/reoxygenation. Mitochondrial transmembrane potential (ΔΨm) was measured with the tetramethylrhodamine methyl ester (TMRM) fluorescence method. NRVM were stained with TMRM (50 nM, Invitrogen) and Mitotracker Green (200 nM, Invitrogen) in DMEM for 30 min at 37°C in the dark. Then, the cells were washed twice with PBS. Mitochondrial PTP opening was assessed by the quenching of Calcein-AM fluorescence by cobalt. The cells were stained with Calcein-AM (1 μM, Invitrogen) and Mitotracker Red (150 nM, Invitrogen) at 37°C in the dark for 30 min, and then CoCl2 (1 mM, Sigma) in HBSS 1X (Gibco) was added and the samples were incubated at 37°C for another 10 min. Then, cells were washed three times in 1X HBSS. Live images of the cells were captured with a Zeiss LSM710 confocal microscope and analyzed using ImageJ software (version 1.38×, National Institutes of Health).
Lentivirus and Adenovirus
For lentiviral based endogenous NR4A3 and Bnip3 gene knockdown, three NR4A3 shRNA and plasmid DNA constructs in hU6-MCS-CBh-gcGFP-IRES-puromycin-shRNA lentiviral vectors complementary to rat NR4A3 gene coding sequences were purchased from Genechem (Shanghai, China). The shRNA sequences are 5'-CCGGGCAGACTTATGGCTCGGAATACTCGAGTATTCCGAGCCATAAGTCTGCTTTTT-3', 5'-CCGGCCTCCGATCTGTATGATGAACCTCGAGATTCATCATACAGATCGGAGGTTTTT-3' and 5'-CCGGCGGCCTTTGATCAAGATGGAACTCGAGTTCCATCTTGATCAAAGGCCGTTTTT-3'. The Bnip3 Rat shRNA Lentiviral Particle (CAT#: TL711845V, OriGene) and Lentiviral Packaging Kits (CAT#: TR30037) were purchased from OriGene (Beijing, China). The recombinant shRNA lentiviral plasmid or scrambled shRNA control vector was transfected into HEK-293 cells to generate lentiviruses. Thereafter, shRNA lentiviruses were transduced into to NRVM.
Adenoviral carrying full-length, three truncated (ΔAF1, ΔDBD, and ΔLBD) and two mutant (S376D, S376A) human Nr4a3 cDNA clones were constructed, packed, and purified by GeneChem (Shanghai, China). NRVM cells were transfected with Adv-Nr4a3 cDNA clones.
Nuclear/mitochondria/cytosol isolation
The nuclear and cytosolic fractions were isolated from cells treated with or without hypoxia/reoxygenation using Nuclear/Cytosol Fractionation Kit (Cat.K266, Biovison). The mitochondrial and cytosolic fractions were isolated from cells with or without hypoxia/reoxygenation using a mitochondria/cytosol isolation kit (Cat.K256, Biovison).
Alkali extraction
Mitochondrial and cytosolic fractions were isolation using an isolation kit (Cat.K256, Biovison). To analyze whether Bnip3 integrated into mitochondrial membranes during hypoxia/reoxygenation, the mitochondria fraction was treated with ice cold alkali solution (0.1M Na2CO3, pH 11.5) on ice for 20 min. Mitochondrial fractions were recovered by centrifugation for 45 min at 20,000 x g, 4°C. The supernatant was discarded and cell pellets were lysed for western blot analysis.
Immunoprecipitation
Cells were cultured with or without hypoxia/reoxygenation and then lysed using IP Lysis buffer (Thermo Scientific). Target proteins were extracted using Protein A/G magnetic beads (Cat.B23202, Bimake). Cell lysates were incubated with Beads-Ab complex for 10 min at room temperature. Then, Beads-Ab-Ag complex were washed with wash buffer (50 mM Tris, 150 mM NaCl, 0.5% NP-40, pH 7.5) and eluted with elution buffer (0.1 M-0.2 M Glycine, 0.5% NP-40, pH 2.5-3.1). Finally, solutions were neutralized with neutralize buffer (1 M Tris, pH 8.0). Western blotting was used to detect proteins that interacted with the target protein. All antibodies and kits used in this study are listed in Table, S1.
Statistical analysis
Data were presented as box-and-whisker plots with all points. Comparisons between two groups were made using the Mann-Whitney U test, whereas the data obtained from multiple groups were compared using the Kruskal-Wallis test with Dunn’s multiple comparison test. Two-way ANOVA followed by Bonferroni post hoc analysis was performed to analyze data with two factors. P-values < 0.05 were considered statistically significant. Statistical analyses were performed with GraphPad Prism 7.0 (Graph Pad Prism Software Inc, San Diego, CA) and SPSS 15.0 for Windows (SPSS, Inc, Chicago, IL)