Study Design and Oversight
This 3-part, phase 3, observer-blind, randomized, placebo-controlled (Part A) and open-label (Parts B and C) trial was conducted in 99 US sites in adults with no or stable medical conditions as previously described with 2 years of planned follow-up (Fig. S1).1,2 Parts B and C open-label offered participants an opportunity to receive the primary series (if received placebo in Part A) and booster of mRNA-1273, respectively. This report is through the protocol planned follow-up plus study augmentation with booster vaccination, given the changing response to the pandemic over time. Longer-term safety, efficacy and immunogenicity data from study initiation (July 27, 2020) through the open-label and booster Parts of the study (B and C) (April 7, 2023) are presented.
The trial was conducted in accordance with the International Council for Harmonisation of Technical Requirements for Registration of Pharmaceuticals for Human Use, Good Clinical Practice guidelines. The central Institutional Review Board approved the protocol and consent forms. All participants provided written informed consent.
Study Objectives
The efficacy, safety, and immunogenicity outcomes of the COVE trial were previously reported for the blinded Part A of the study.1,2,13 Part B of the study provides longer-term safety follow-up and efficacy data following the primary series from unblinding (or participant decision visit [PDV]) to booster dose at day 1 (BD-1). Part C objectives evaluated the safety, efficacy, and immunogenicity of a 50-µg booster dose of mRNA-1273. Part C boosting started in fall 2021 for all study participants when the booster immunization received EUA, thus creating a difference in boosting interval based on initial randomization schema between initial vaccine recipients (mRNA-1273 group received mRNA-1273 July-December 20) and Part B placebo crossover participants (placebo-mRNA-1273 group received the mRNA-1273 primary series December 2020-April 2021).
Safety for the Part A blinded portion of the study was previously reported.1,2 Safety data for Parts B and C included unsolicited AEs for 28 days after vaccination, and medically-attended (MAAEs), serious (SAEs), and AEs leading to discontinuations. In addition, safety data for Part C included AEs of special interest (AESIs) including hypersensitivity, cardiac events (myocarditis and pericarditis) and vascular events for Part C through study-end. In Part C, adverse reactions (ARs) were not solicited because the reactogenicity of the 50-µg mRNA-1273 booster dose has been found to be similar to that of the second injection of the primary series;18 ARs that met the criteria for a MAAE, SAE, or leading to discontinuation were recorded.
Efficacy endpoints for the mRNA-1273 primary series and booster were assessed using active surveillance and included COVID-19 (COVE1,2 and CDC definitions29), severe COVID-19, serologically confirmed SARS-CoV-2 infection or COVID-19 regardless of symptomatology or severity, asymptomatic SARS-CoV-2 infection and death caused by COVID-19 (Supplementary methods). Cases of COVID-19 and severe COVID-19 were adjudicated by an independent committee. Because Part C lacked a placebo comparison group, efficacy was evaluated by a comparison of COVID-19 incidence rates in boosted and unboosted groups, as well as by inferring effectiveness based on a bridging analysis of immune responses post-boost and post-primary series where efficacy was demonstrated.
Part C immunogenicity objectives compared immune responses following the mRNA-1273 booster at day 29 (BD-29) with immunological responses following two-injections of the mRNA-1273 primary series at day 57 to infer booster effectiveness. Neutralizing antibodies (nAb) against SARS-CoV-2 were analyzed using a pseudovirus nAb assay for ancestral SARS-CoV-2 (D614G) and SARS-CoV-2 spike-bAbs using a Mesoscale Discovery (MSD) assay (Supplementary methods).47,48
Exploratory endpoints included whole genome sequence analysis of SARS-CoV-2 variants from nasopharyngeal samples of participants at illness visits and booster efficacy using a statistical Cox model adjusting for time-varying effects that estimated COVID-19 risk reduction (Supplementary methods).
Statistical Analysis
Safety was assessed for the primary series in the Primary Series Safety Set, comprised of all participants who were randomized in Part A and received at least one-injection of the primary series (mRNA-1273 and placebo-mRNA-1273 groups), and for the booster in the Part C Safety Set consisting of randomized participants who received 50-µg mRNA-1273 booster (Table S1). Summary statistics of unsolicited AEs, SAEs, MAAEs, AEs leading to withdrawal from study participation, and deaths are presented.
The longer-term efficacy of the primary series was assessed in the per-protocol primary series (PP-primary) set consisting of all participants who received the primary vaccination in Parts A or B and had no evidence of prior SARS-CoV-2 infection (negative RT-PCR and nucleocapsid antibody tests) prior to the primary series. COVID-19 incidence prior to boosting in primary series recipients (mRNA-1273 [early] vs placebo-mRNA-1273 [late] vaccination) is presented. Incidence rates of efficacy endpoints (e.g, COVID-19, severe COVID-19, etc.) post-booster were assessed in the Part C-PP set, which included all participants who received the primary series in Parts A or B followed by a booster dose and were pre-booster SARS-CoV-2-infection negative with no major protocol deviations. mRNA-1273 and placebo-mRNA-1273 groups were not combined for efficacy analyses due to differences in time intervals between the primary series and booster dose.
For the primary series and booster, incidence rates based on the number of participants with adjudicated COVID-19 and severe COVID-19 per number at risk adjusted by person-months and 95% confidence interval (CI) (Poisson distribution) are provided by calendar periods corresponding to variant waves (September 1, 2021-November 30, 2021 [Delta]; December 1, 2021-March 31, 2023 [Omicron BA.1]; April 1, 2022-June 30, 2022 [Omicron BA.2]; July 1, 2022-November 30, 2022 [Omicron BA.4/5]; December 1, 2022-April 7, 2023 [Omicron BQ.1.1]), and by time periods for intervals after vaccination (Supplementary methods).
Relative booster efficacy was assessed in participants who received a booster after the primary series versus non-booster participants who did not receive a booster post-primary series based on adjudicated COVID-19 cases starting 14 days after the booster dose in the PP-primary set using a dynamic approach for each treatment group. Participants considered at risk in the non-boosted group were those in the PP-primary set who had not received a booster at the specified time point, and participants considered at risk in the ‘booster’ group were those in the PP-primary set who had received a booster prior to the specified time point. The comparison of incidence between booster and non-booster participants is limited, as these groups were not randomized. Reductions in incidence (1-incidence ratio) and 95% CI were calculated using the exact method conditional upon the total number of cases, adjusting for person-months. Efficacy against COVID-19 was also evaluated by subgroups (e.g., age, randomization risk stratification, sex, race, ethnicity, severe COVID-19 risk factor).
Immunogenicity was assessed in the Part C PPIS. The Part C PPIS consists of a subset of participants randomly selected in the Per-Protocol Random Subcohort for Immunogenicity who received mRNA-1273 in Part A,13 were SARS-CoV-2 negative baseline (pre-injection 1) and received a booster in Part C. Geometric mean concentrations for nAb and GM-levels for bAb, GMFRs and SRRs with 95% CIs (Clopper-Pearson) against ancestral SARS-CoV-2 (D614G) are provided at each post-baseline timepoint relative to pre-injection 1 of primary series and pre-booster (BD-1) baseline. Primary series and booster SRRs were defined as titer changes from baseline below the lower limit of quantification (LLOQ) to ≥ 4 × LLOQ, or ≥ 4-fold rise if the baseline is ≥ LLOQ. For the primary immunogenicity objective, GM ratios (GMR) of nAb responses and SRR differences were compared at 28 days post-booster (BD-29) versus the primary series at day 57 (28 days post-injection 2) in Part C PPIS-negative participants (having no virologic/serologic evidence of SARS-CoV-2-infection on/before BD-1) and in all PPIS participants regardless of prior SARS-CoV-2-infection status. Due to the limited size of the PPIS-positive group, immunogenicity was not compared and is summarized. Criteria for non-inferiority were met when the lower bounds of the 95% CIs for the GMRs and SRR differences were > 0.67 and >-10%, respectively. Criteria for superiority were met when the lower bounds of the 95% CIs for the GMRs and SRR differences were > 1 and > 0, respectively. Immunogenicity data at days 209 after the primary series and 181 post-booster in the PPIS participants and by SARS-CoV-2-infection pre-booster status as well as by age group and SARS-CoV-2-infection pre-booster status are also presented. Analyses of the impact of time intervals between the primary series and booster on antibody responses among PPIS-negative mRNA-1273 participants and in a subset of placebo-mRNA-1273 PPIS-negative participants with non-missing time intervals and immunogenicity results at BD-1 were also performed.
Genotypic analysis of variants by whole-genome sequencing was performed on SARS-CoV-2-positive nasopharyngeal swabs collected at illness visits from participants following the primary series and the booster in Part C. Samples were collected from July 2020 (start of Part A) through April 2022 (data-cutoff date date). The number and percentage of cases by variant were summarized.
Booster efficacy was further explored using a Cox proportional hazards model in participants in the PP-primary set who remained on study and were COVID-19-naïve as of 23-September-2021 (first date that participants were boosted); those who did not receive a booster through January 31, 2022 were censored on that date (See details in the Supplementary methods and Fig. S11).30 The model adjusted for baseline factors (e.g., sex, stratification factor for severe COVID-19 risk [≥ 18 years and < 65 years old not at risk, ≥ 18 years and < 65 years old at risk, and ≥ 65 years old], risk score, early unblinding). As boosting was not randomized, the mRNA-1273 and placebo-mRNA-1273 groups were evaluated in terms of boost initiation with a covariate of time since vaccination in the model with early and late boosted participants who received booster before and on or later than 25-October-2021 (median of booster dates). The incidences of symptomatic COVID-19 against Delta and Omicron during the follow-up period from 23-September-2021 through 05-April 2022 was calculated starting at 14 days post-booster; those who acquired COVID-19 during the interval from the booster dose up to 13 days later were censored.
All analyses were conducted using SAS Version 9.4 or higher.