We utilized the in-house program package CRYSTL for all simulations, as detailed in the method section. An example of the simulation at T0 = 10K is displayed in Figure S1. T0 represents the applied constant temperature to the system. Our choice of the 9 − 6 LJ potential of Au, V(r), is based on reference28 including an extra cutoff function, fc(r).
$$V\left(r\right)={f}_{c}\left(r\right){\epsilon }_{0}\left[2{\left(\frac{{r}_{0}}{r}\right)}^{9}-3{\left(\frac{{r}_{0}}{r}\right)}^{6}\right]$$
1
$${f}_{c}\left(r\right)=\left\{\begin{array}{cc}1& r\le {r}_{min}\\ 1-6{x}^{5}+15{x}^{4}-10{x}^{3}& {r}_{min}\le r\le {r}_{max}\\ 0& {r}_{max}\le r\end{array}\right.$$
2
$$x=\frac{r-{r}_{min}}{{r}_{max}-{r}_{min}}$$
3
where, r symbolizes the distance between two atoms, \({\epsilon }_{0}\) signifies the depth of potential energy at the distance r = r0. Cut-off functions, commonly employed in various models, play a crucial role in fine-tuning short- and long-range interactions among atoms.29 We implemented the function fc(r) defined by parameters r, rmax, and rmin, ensuring its first and second derivatives are zero at both ending positions for the sake of stable simulations. We set rmin=3.0 Å in all the simulations.
In an equilibrium system, the distribution of the kinetic energy of atoms can be expressed following the Boltzmann distribution.
$$f\left(E\right)={E}^{\frac{{n}_{d}-2}{2}}{e}^{-\frac{E}{kT}}$$
4
Here, E represents the kinetic energy of an atom, T denotes the temperature defined by kinetic energy, k is the Boltzmann constant, and nd (with values 1, 2, 3 in Cartesian coordinate) indicates the degrees of freedom of the atom in space. We utilized the same equation when analyzing distributions of potential and total energies, however both the degrees of freedom and temperature are different.
We initiated the analysis with a one-dimensional chain comprising 503 atoms and when each atom only couples with its nearest two neighbors. The distance distribution function among atoms at T0 = 100K is depicted in Figure S2 with an interatomic distance of about 3 Å. To ensure that each atom experiences coupling only from its two immediate neighbors, we set rmax to 5 Å in the initial exploration. We concentrate on the solid state at temperatures T0 from 50 to 100K where the bonding between atoms remains intact.
Figure 1. (a, b, and c) Simulated and fitted distributions of kinetic (Ekin/kT0), potential (Epot/kT0), and total (Etotal/kT0) energy of atoms in a one dimensional chain at temperatures (T0) of 50 and 100K, (d) averaged energy, (e) fitted dimension, and (f) temperature of kinetic, potential, and total energy over temperatures (T0) ranging from 50 to 100K, with rmax set at 5 Å where each atom will couple dominantly with two nearest neighbors. (g, h, and i) Simulated and fitted distributions of kinetic (Ekin/kT0), potential (Epot/kT0), and total (Etotal/kT0) energy of atoms in a one-dimensional chain at temperatures (T0) of 50 and 100K, (j) averaged energy, (k) fitted dimension, and (l) temperature of kinetic, potential, and total energies of temperature (T0) from 50 to 100K when rmax is set to 12 Å.
Figure 1(a, b, and c) presents the simulated and fitted kinetic (Ekin/kT0), potential (Epot/kT0) and total (Etotal= Ekin +Epot) energy distributions of atoms at T0 of 50 and 100K. The distribution functions are calculated using data of about 500 steps at constant temperature regime. For the total energy distribution in Fig. 1c, the agreement between simulated and fitted curves is encouraging but not as strong as observed for kinetic and potential energies in Fig. 1a and b.
Figure 1(d, e, and f) illustrates the averaged energy, dimension, and temperature of kinetic, potential, and total energy of atoms. In Fig. 1d, Etotal equals kT0 with half from Ekin and the other half from Epot contributions. The fitted dimension of kinetic energy (Dkin=1) in Fig. 1e aligns with the one-dimensional chain and temperature of kinetic energy (Tkin/T0) is also close to one. Notably, the fitted Dpot in Fig. 1e is two, twice that of Dkin.
The increased dimension can be attributed to the coupling between atoms and their two closest neighbors. In classical mechanics, the increasing Dpot indicates an increased configuration probability of potential energy for each atom. As the temperature rises above 0K, the thermal vibration of atoms creates an asymmetric condition at two sides of the atom, resulting in two different configurations (or dimensions) for atoms to maintain the same energy level. Consequently, the potential energy of atoms exhibits a dimension of two instead of one. It's noteworthy that even though Dpot exhibits a higher dimension, the fitted Tpot reduces to 1/2T0. Moreover, Epot remains at 1/2kT0.
The fitted Dtotal is 2.8, which coincidentally is close to the sum of Dkin and Dpot at 3. The fitted Ttotal is approximately 0.63T0. In accordance with the equipartition theorem, the calculated total energy from Dtotal×Ttotal is 0.88 kT0, lower than kT0, as indicated in Fig. 1d. These results highlight the challenges associated with convergence in molecular dynamics simulations. While we achieved satisfactory convergence of the total energy, maintaining all distribution functions close to the theoretical distribution remains a complex task.
In the subsequent studies, we adjusted rmax to 12 Å, the value used by the original authors to truncate atom interactions.28 When rmax = 12 Å, each atom couples with 8 nearby atoms approximately. The results are displayed in Fig. 1g-l. The kinetic energy distribution in Fig. 1g remains largely unchanged in comparison to rmax = 5 Å. However, the potential energy distribution deviates from the monotonically decreasing trend in Fig. 1b. A peak appears at Epot=0.13kT0. A more intriguing observation is the extension of the energy distribution tail well below the energy at 0K. The presence of a tail below zero implies that as the temperature T0 rises above zero, the relaxation of atomic coordinates from their lattice positions not only results in higher potential energy but also leads to an unusual phenomenon where the potential energy of some atoms becomes lower than their energy at 0K. This phenomenon resembles symmetry breaking, 30 where the symmetry of a lower energy state is lower than that of a higher state.
We suspect that the non-zero distribution at negative energy might be a consequence of the classical treatment of atom interactions using a Lennard Jones (LJ) potential and addressing potential energy individually instead of grouping atoms in each vibrational mode. Classically, this result is understandable. At zero temperature in classical mechanics, all atoms are fixed at lattice positions. When an atom interacts with multiple nearby atoms (e.g., 8 when rmax=12 Å), the attractive nature of long-term interactions applies constraints among atoms. At higher temperatures, atoms relax and oscillate near their lattice positions due to increased kinetic energy, reducing constraints, and potentially leading to even lower energy for an atom under certain conditions.
Figure 1h indicates that we can still use Eq. 4 to approximately fit the distribution curve by disregarding the distribution at negative potential energy. The same challenge persists when fitting the distribution function of total energy in Fig. 1i and subsequent two- and three- dimensional arrays.
Future work will explore more robust mathematical derivations to account for these non-zero distributions at negative energy. This will either confirm that these anomalies are artifacts of classical treatment and will vanish with the application of quantum mechanics theory, or it will necessitate the development of a more suitable distribution function within the framework of classical mechanics.
The averaged energy, fitted temperature and dimension of kinetic, potential, and total energies from T0 of 50 to 100K are shown in Fig. 1j-l when rmax=12 Å. Ekin/kT0 is well conserved. Epot is close to Ekin, however, there is a slight uphill trend with increasing T0 for Epot/kT0. The same is for Etotal/kT0.
In Fig. 1k, Dkin remains constant across all temperatures. Dpot increases from 2 to 2.7 when rmax is varied from 5 to 12 Å at T0 = 50K. The value gradually drops to 2.6 at 100K. However, we have yet to identify a logical reason for the drop in Dpot with increasing T0. Neither for Dtotal which exhibits the opposite trend, steadily increasing with T0. We posit that the change in the volume of the chain may influence the fitted dimension, and anharmonicity in the potential energy may also play a role. Further exploration is necessary to uncover the physical origin of these phenomena.
In Fig. 1l, Tkin/T0 remains close to one. Tpot/T0 slightly increases with rising T0, aligning with the observed trend in Epot/kT0 in Fig. 1j. There is no significant change in Ttotal/T0.
Figure 2 displays variations in Epot/kT0, Dpot, and Tpot/T0 for atoms at T0 of 50, 80, and 100 K for different values of rmax. A consistently observed turning point at rmax = 6 Å is notable. Both Epot/kT0 and dimension increase with increasing rmax. Tpot/T0 increases initially and drops after turning point. The data robustly support the conclusion that the number of coupling atoms significantly influences the fitted values. As shown in Figure S2, the average distance between two neighboring atoms is approximately 3 Å. When rmax is less than six, each atom experiences coupling only with its two closest neighbors, resulting in a dimension consistently less than two. As rmax surpasses six, each atom couples with more nearby atoms, leading to a rapid growth in dimension that reaches a plateau when rmax = 10 Å.
From the studies of a one-dimensional array, we learned that Dpot is significantly different from Dkin and increases when an atom is coupled with more atoms nearby. This lays the foundation for investigating the melting process of crystals in two or three dimensions using Dpot. In the case of a two-dimensional crystal, it can withstand much higher temperatures than the one-dimensional case to maintain a solid state. We will focus on temperatures (T0) higher than 300 K. Figure S3 illustrates the radial distribution among atoms in a two-dimensional array including 506 atoms, along with three snapshots at different temperatures (T0) and rmax.
The results for two-dimensional arrays are presented in Fig. 3. Figures 3(a, b, and c) correspond to rmax=4.5 Å to keep each atom primarily coupling with its six nearest neighbors. rmax is reduced from 5 to 4.5 Å since the second nearest distance shown in Figure S3a is reduced to 5 Å in two dimensional arrays. In Fig. 3a, Epot/kT0 is shown at different T0 and simulation steps. Data of more temperatures are displayed in Figure S4. The relative energy Epot/kT0 at constant temperature regime after step of 80,000 experiences a rapid increase at T0 = 1100 K. The abrupt change is attributed to bond breaking among atoms. With rmax=4.5 Å, atoms dominantly couple with their six nearest neighbors only. Once the bond breaks, there is no restoring force to keep the atoms connected, leading the array to evaporate directly into a dissociated (gas) state as indicated in Figure S3c.
Figure 3b illustrates the change in pressure within the array at different temperature (T0) and simulation steps. When T0 is below 1000K, the pressure initially increases as the temperature gradually rises from 0K to T0 but drops and stabilizes around the applied one atm pressure. At T0 = 1100K, there is a drastic pressure increase after step = 75,000, caused by the transition of atoms from an ordered lattice position to a relatively random arrangement. After the rearrangement, the pressure gradually drops, instead of returning to about one atm, the pressure is leveling off at about 0.25 GPa even at the end of the simulations. The periodic distances of the array in Figure S5a continues to rise at T0 = 1100K indicating the array is separating apart. Eventually, the periodic distance will keep increasing until the pressure of the system gradually drops to one atm. The distribution function of potential energy in Fig. 3c reinforces this conclusion. The distribution functions smoothly follow the Boltzmann distribution when T0 is below 1000K, but multiple oscillation peaks appear when T0 = 1100K due to atoms at the separated boundaries.
In Fig. 3(d, e, and f), the outcomes are illustrated at rmax of 12 Å. Notably, at T0 = 940K, there is a sudden surge of Epot/kT0 from 1.4 to 2.2 at constant temperature region and then stabilized around the value. Supportive data at more T0 can be found in Figure S4b. The surge signifies that the crystal undergoes a phase change around 940 K, transitioning into a liquefied state. Moving to Fig. 3e, at T0 = 940 K, the pressure of the array exhibits a rapid increase at step around 75,000, followed by a gradual decline and consistently oscillates around one atm, indicating that the system reaches equilibrium and maintains a stable liquid state. The periodic distance in Figure S5b supports the same conclusion with a noticeable sudden change at T0 = 940K. The distribution function of potential energy in Fig. 3f smoothly adheres to the Boltzmann distribution across the entire studied temperature range. It is noteworthy that, at T0 = 300K and rmax=12 Å, there exists a tail of energy distribution extending well below zero, although the population's magnitude is not particularly significant
In Fig. 3g, Epot/kT0 of atoms is depicted as T0 increases from 300 to 1200K for rmax=4.5 and 12 Å. For rmax=4.5 Å, Epot/kT0 exhibits a gradual increase with rising T0, reaching a point at 1100K where the system disintegrates when kinetic energy surpasses the lattice energy. In contrast, for rmax=12 Å, Epot/kT0 shows a steeper incline as T0 increases, particularly experiencing a sharp spike at around T0 = 900 K, signifying a phase change from a solid to a liquid state. Beyond T0 = 1000K, Epot/kT0 continues to rise, albeit with a smaller slope.
Dpot in Fig. 3h exhibits a consistent increasing trend with rising T0 when rmax is 4.5 Å. The Dpot value is close to six, correlating with the number of nearby atoms in a hexagonal array. Beyond T0 = 1100K, a temporary drop in dimension occurs during the system crash, followed by a sharp increase. This momentary decrease is attributed to the transformation of lattice positions of atoms to random positions, where the drop in the number of coupling atoms outpaces the increase in the volume of the array.
For rmax=12 Å, the increasing slope of Dpot is significantly larger than when rmax=4.5 Å. At T0 = 900K, a slight drop in Dpot is followed by a sharp increase. The simulations suggest that the transition from a solid crystal to a liquid state introduces random distribution of atoms, increasing the number of configuration or the dimension of potential energy (Dpot). In other words, the randomness of atom positions in a liquid enhances the array's configurational diversity, allowing the system to accommodate more potential energy with higher dimension at a given temperature during the phase transition.
Analyzing the fitted Tpot/T0 in Fig. 3i reveals that Tpot/T0 remains nearly constant when rmax=4.5 Å and T0 < 1080K similar to the one-dimensional case when rmax=5.0 Å. There is a sharp oscillation of Tpot/T0 when T0 is larger than 1080K and the array starts to dissociate. Conversely, for rmax=12 Å, Tpot/T0 decreases with rising T0 during the solid state and experiences a sharp increase during the phase transition process around T0 = 940 K. This increase is attributed to the coexistence of liquid and solid phases. As liquid and solid phases have distinct potential energy, introducing liquid phase to a solid phase elevates the relative internal energy, resulting in a higher Tpot/T0. As more liquid contributes to the coexisting phase, its fitted dimension will increase sharply and Tpot/T0 starts to drop. However, when the array is completely liquefied, Tpot/T0 begins to slightly rise with increasing T0.
We also explored three-dimensional arrays including 500 atoms, and the results are presented in Fig. 4. The findings align closely with those observed in two-dimensional cases. We further reduced rmax to 4.0 angstrom to keep each atom coupling with its nearest 12 neighbors due to the second nearest inter-atom distance is reduced to 4.3 Å in three dimensions. For rmax=4.0 Å, the crystal undergoes dissociation when T0 is larger than 1860K as indicated in Fig. 4a. Notably, the fitted dimension, as shown in Fig. 4b, is close to 10, deviating from the expected 12, the number of neighboring atoms, when the temperature (T0) is below 1000K. Dpot increases and does surpass 12 when T0 is over 1700K. There is no significant change for the fitted Tpot/T0 when T0 is less than 1840K.
For rmax=12 Å, both Epot/kT0 and Dpot increase as T0 rises, with a pronounced spike at about T0 = 1800K. The fitted Tpot/T0 exhibits a steeper decline compared to the two-dimensional arrays, extending into the temperature range when the crystal melts into a liquid. There is a slight increase in Tpot/T0 at T0 = 1800K, followed by a rapid decrease with further increasing T0. Even in the liquid phase, Tpot/T0 continues to decline with increasing T0, presenting a contrasting trend to the two-dimensional case. The distance distribution function, the simulated and fitted distribution functions of potential energy, pressure, periodic distance, and the average potential energy at different T0 and various simulation steps are displayed in supplementary materials Figure S6-10, respectively. It is worth noting that the population of atoms with negative energy becomes very prominent at T0 = 300K even though they disappear when T0 is further increased over 1000K at rmax=12 angstrom shown in Figure S7b. The calculated melting temperature can be tuned to be close to the experimentally measured value of 1337K by reducing ε0 in Eq. 1. 31 Considering the possible supercooling and superheating in the simulated phase transition, 4 and the fine-tuning does not alter the general conclusion, we did not change ε0 in the presented data.