Animals
All animal experiments were carried out in accordance with the Institutional Animal Care and Use Committee (IACUC) guidelines of The University of Tokyo. We complied with all relevant ethical regulations. Male DBA/1JJmsSlc mice aged 8 to 10 weeks were purchased from the Sankyo Labo Service Corporation (Tokyo, Japan). All animals were housed in cages with free access to food and water in a facility approved by the IACUC. The mice were separated in each group with a maximum of four mice per cage. The temperature was maintained at 18 to 22℃ with a 12-hour light/dark cycle. The mice were habituated to the experimental environment for at least one week prior to the experiments. The experiments were conducted during the light phase (from 9:00 am to 9:00 pm).
CAIA induction and drug administration
CAIA was induced by an intravenous injection of 1.5 mg anti-collagen monoclonal antibody cocktail (#53040, Chondrex, WA, USA) at day 0 and intraperitoneal injection of 50 µg lipopolysaccharide from E. coli (#53040, Chondrex) at day 3. The mice were divided into the following groups, which were compared with six mice per group: CAIA group (CAIA mice with administration of vehicle), baricitinib group (CAIA mice with administration of baricitinib), celecoxib group (CAIA mice with administration of celecoxib) and control group (wild-type mice with administration of vehicle). Baricitinib (4 mg/mL; HY-15315, Med Chem Express, NJ, USA) and celecoxib (3 mg/mL; C-2816, Tokyo Chemical Industry, Tokyo, Japan) were dissolved in distilled water, and 200 µL baricitinib (40 mg/kg/day) and celecoxib (30 mg/kg/day) were intragastrically administered once a day from day 0. The equivalent quantity of vehicle was administered to both the CAIA and control groups in the same manner. All tissue samples were harvested 2 hours following the administration of the drugs or vehicle.
Evaluation of arthritis
The severity of arthritis in each mouse’s paws was evaluated by visual scoring (arthritis score) and measurement of the joint width (paw width). The arthritis score is given as the total of all paw visual scores. The visual score for each paw was graded on a scale of 0 to 4, with increments of 0.25: 0, normal; 1, mild redness, slight swelling of the ankle or wrist; 2, moderate swelling of the ankle or wrist; 3, severe swelling, including some digits, ankle or foot; 4, maximally inflamed. The maximum possible score per mouse was 16 [14]. If the arthritis score was less than 4 at day 8, the mouse was excluded in all the experiment without the control group. The paw width is given as the sum of the thickness of all wrists and the width of all ankles, measured using a digital calliper (C110T, Kloeplin, Schlüchtern, Germany) [15]. Measurements were taken every 2 to 3 days.
Histological analysis
Prior to the histological analysis, the mice were euthanised with carbon dioxide. Perfusion fixation was immediately performed, using 10% formalin. Two different sections of the L4-5 segments of the spinal cords and the ankles from each mouse were analysed [16]. All samples were fixed in 10% formalin at room temperature overnight, decalcified in 10% EDTA (pH 7.4) at 4℃ for 5 days, embedded in paraffin and cut into 5- or 6-µm sections. Haematoxylin and eosin (H&E) and safranin O staining were performed according to standard protocols. The degree of joint arthritis was histologically evaluated based on four categories: synovial inflammation, bone erosion, proteoglycan loss and cartilage erosion. Synovial inflammation and bone erosion were evaluated by H&E staining, and proteoglycan loss and cartilage erosion were evaluated by safranin O staining. Each sample was graded from 0 (healthy) to 3 (severe), with incremental grading scores of 0.25, according to a previously described protocol [17]. The total histological score was defined as the sum of the four scores.
Grip strength
Grip strength was measured using a digital grip-strength meter for mice (GPM-101B, Melquest, Toyama, Japan). Each mouse was gently placed on a wire mesh connected to a force transducer. After allowing the mouse to rest for 3 minutes, its tail was pulled and we continuously measured the force until the mouse released the wire mesh. This was repeated five times for each mouse, with intervals of more than 30 seconds. The grip strength power reported is the average of the maximum forces recorded.
von Frey test
We evaluated tactile hypersensitivity using a dynamic plantar aesthesiometer (#37550, Ugo Basile, Gemonio, Italy). A mouse was randomly placed in each box on a wire mesh, and the withdrawal pressure was measured after 30 minutes of rest. This measurement was repeated five times for both hind limbs of each mouse, with 2-minute intervals, and the average values were reported.
Quantitative reverse transcription-polymerase chain reaction (qRT-PCR)
Immediately after mice were euthanised and perfused with chilled phosphate buffered saline (PBS), bilateral ankles, L4-5 DRG and L4-5 spinal cord segments were harvested and placed in TRI Reagent (#TR118, Cosmo Bio, Tokyo, Japan). Total RNA was purified using a Direct-zol RNA Kit (#R2062, Zymo Research, Irvine, CA, USA). The purified total RNA was reverse-transcribed into cDNA using ReverTra Ace qPCR RT Master Mix (#FSQ-201, TOYOBO, Osaka, Japan), and qRT-PCR was performed with THUNDERBIRD SYBR qPCR Mix (#FSQ-201, TOYOBO), using a Thermal Cycler Dice Real-Time System III (Takara Bio, Kusatsu, Japan). Relative quantification using a standard-curve method was used to compare gene expression levels. Target gene expression levels were normalised using glyceraldehyde-3-phosphate dehydrogenase (Gapdh) as an internal control. The primers used are listed in Supplementary Table 1.
RNA sequencing
DRG samples were extracted from three mice per group on day 8. The purified total RNA was confirmed by the ratio of A260/A280 (1.8-2.0), and the RNA integrity number was > 7. Sequencing was performed on an Illumina NovaSeq 6000 System with two 150-bp paired-end reads and 26.7 million reads per sample were extracted. Quality checks and trimming were performed using fastp v0.23.4 [18]. Genome mapping was performed using STAR 2.7.10b [19]. The reference index was created using GRCm39.primaryassembly.genome.fa and gencode.vM31.primary_assembly.annotation.gtf, each downloaded from GENCODE [20]. Mapping information was quantified by RSEM v1.3.3 [21], then aggregated to count the matrix using script_rnakato [22]. Genes detected in 10 or more of the 12 samples were selected. The counts were normalised using DESeq2 [23]. Principal component analyses (PCAs) were performed using the prcomp in stats built in R 4.3.2 [24]. The variance (%) of the first and second principal components is shown in the PCA plot. Heatmaps were visualised using pheatmap: pretty heatmaps v1.0.12. In the four-group analysis, differentially expressed genes (DEGs) and their rankings were determined using TCC v1.42.0 [25] and EBSeq v2.0.0 [26]. The significant genes among CAIA + Baricitinib and others were extracted in Fig. 3G. The scores corresponding to each term in mSigDB (Gene Ontology (GO), m5.all.v2023.2.Mm.symbols.gmt; Pathway, m2.cp.v2023.2.Mm.symbols.gmt) were calculated sample-by-sample using AUCell v1.24.0. Differences among groups were determined using a one-way ANOVA, and significantly different GO terms and pathways were defined as P-values < 0.0001 and < 0.01, respectively. In the two-group analysis, DEGs were extracted using DESeq2 with the following cutoff values: adjusted P-values < 0.01 and log2Fc > 0.3. GO analyses were performed using clusterProfiler, referring to the same mSigDB as previously described. Bar plots of log10(p-value) values marked as positive or negative according to the sample were illustrated using ggplot2 [27]. Hallmark GO scores were calculated by referring to mh.all.v2023.2.Mm.symbols.gmt using AUCell, then performed t.test in stats with the significant criteria P-value < 0.05. Gene set enrichment analysis (GSEA) of the Hallmark gene set was performed using GSEA 4.2.3 [28, 29].
Immunohistochemistry
The paraffin-embedded sections were incubated with primary antibodies against glial fibrillary acidic protein (GFAP, 1:2,000, 16825-1-AP, Proteintech, Rosemont, IL, USA) or ionized calcium-binding adapter molecule 1 (Iba1, 1:250, NB100-1028, Novus Biologicals, Centennial, CO, USA) for 1 hour at room temperature. The sections were then incubated for 30 minutes at room temperature with horseradish peroxidase-conjugated secondary antibodies, and Histofine Simple Stain DAB (3,3'-diaminobenzine) (#415172, Nichirei Biosciences, Tokyo, Japan) was used for visualisation. Positive signal areas were measured using ImageScope (Leica Microsystems, Wetzlar, Germany) [30].
Cell culture
Cells of the mouse cell line Neuro-2a were purchased from the Japanese Collection of Research Bioresources (JCRB) Cell Bank. Neuro-2a cells were cultured in Minimum Essential Medium (#M5650, Sigma-Aldrich, St. Louis, MO, USA) with 10% fetal bovine serum (#F7524, Sigma-Aldrich), 1% penicillin–streptomycin (#09367-34, Nacalai Tesque, Kyoto, Japan) and 1% L-glutamine (#073-05391, Fujifilm Wako Pure Chemical Corporation, Osaka, Japan). Neuro-2a cells were seeded into 24-well plates at a density of 2.5 × 104 cells per well with 500 µL of medium and incubated at 37°C for 24 hours. The Neuro-2a cells were then incubated with a mixture of recombinant human IL-6 (50 ng/mL, 206-IL, R&D Systems, Minneapolis, MN, USA) and recombinant human sIL-6R (50 ng/mL, 227-SR, R&D Systems) or recombinant human TNF-α (50 ng/mL, 300-01A, Peprotech, Rocky Hill, NJ, USA). Baricitinib (400 ng/mL, HY-15315, Med Chem Express), celecoxib (300 ng/mL; C-2816, Tokyo Chemical Industry) and BMS-345541 (50 ng/mL, S8044, Selleck Chemicals, Tx, USA) were added to the treatment groups.
Statistical analysis
A one-way ANOVA followed by Tukey’s post hoc test was used to establish statistical significance in comparisons between the four groups, and values are expressed as means ± standard deviation (SD). A two-way ANOVA followed by Tukey’s post hoc test was used for time-course comparisons of the four groups, and the values are expressed as means ± standard error of the mean (SEM). The sample size was determined based on previous studies that employed similar methods. A P-value of less than 0.05 was considered to be statistically significant. The statistical analyses were performed using PRISM version 9.3.1 (GraphPad Software, San Diego, California, USA).