Materials
Forchlorfenuron was purchased from Sigma-Aldrich (St. Louis, MO, USA). MTT, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazoliumbromide), was a product of Sigma- Aldrich (St. Louis, MO, USA). Annexin V-FITC/PI Apoptosis kit was obtained from Sigma-Aldrich (St. Louis, MO, USA). P38 inhibitor SB203580 and primary antibodies (p-38, p-p38, MKK3, p-MKK3, p-ATF2, ATF2, bcl-2, bax) were bought from Cell Signaling Technology (Danvers, MA, USA).
Data collection of network pharmacology
The Canonical SMILES of forchlorfenuron (CAS NO. 68157-60-8) were obtained from the PubChem website (https://pubchem.ncbi.nlm.nih.gov/). Then, the Swiss Target Prediction Database (http://www.swisstargetprediction.ch) and the PharmMapper database (http://www.lilab-ecust.cn/pharmmapper) were used to collect potential targets for forchlorfenuron. “Chemical and Drug Induced Liver Injury” was designated as keyword to search for hepatotoxicity targets on CTD websites (http://ctdbase.org/) 34. The genes were standardized by using the Uniprot database (https://www.uniprot.org) and the intersecting targets were collected on the site venny2.1 (https://bioinfogp.cnb.csic.es/tools/venny/). The overlapped targets were integrated into the protein-protein interaction (PPI) network using the STRING database and the minimum required interaction score was set “≧0.9”. Then the intersecting targets were imported into Cytoscape 3.9.1 software and Metascape (https://metascape.org/gp/index.html#/main/step1) for obtaining the Gene Ontology (GO) functional annotation and the Kyoto Encyclopedia of Genes and Genomes (KEGG) pathways, respectively.
Molecular docking
The file containing forchlorfenuron mol2 was obtained from the Pubchem website. The PDB structures for the apoptotic pathway targets Akt, P38, MKK3 and JNK were obtained from the pdb database. Autodock 4.2.6 was used to create the molecular docking model, and Pymol was used to store the final result. By using the Autodock software, one could store the Binding Energy data, export the docking file, perform molecular docking, hydrogenation, and charge operations on compounds and proteins, and then move on to visualization and analysis.
Cell Culture
HepaRG cells were obtained from Guan Dao Biotechnology (Shanghai, China) and cultured in RPMI-1640 medium supplemented with 10% (v/v) fetal bovine serum (FBS) (Gibco, Thermo Fisher Scientific, Waltham, MA, USA), 100 U/mL penicillin and 100 µg/mL streptomycin. The media and supplements were purchased from Gibco Life Technologies (Grand Island, NY, USA). The cell cultures were kept in a humidified atmosphere containing 5% CO2 at 37 ℃. Forchlorfenuron was dissolved in DMSO and incubated in FBS-free complete medium with a final DMSO concentration of 1%.
Cell Viability
Cell viability was determined using MTT assay. Briefly, HepaRG cells were plated on 96-well plates at a density of 8×104 cells per well and then incubated at 37 ℃ for 24 h. The cells were treated with forchlorfenuron for 24 h, 48h and 72 h. MTT (5mg/mL) was added to each well and incubated for 4 h. The medium was removed, and the formazan crystals were dissolved with dimethyl sulfoxide (DMSO). The absorbance was measured at 570 nm on a microplate reader (TECAN Infinite M1000, Grödig, Austria).
Morphological assessment and quantification of apoptotic HepaRG cells
Hoechst 33342 staining was used for the morphological analyses of the apoptosis of cells. Apoptotic cells exhibit nuclear chromatin condensation and fragmentation. After treatment, the cells were incubated with 5 mg/ml Hoechst33342 for 15 min, washed twice with phosphate-buffered saline (PBS), and visualized by fluorescence microscopy (Leica, Germany).
Flow cytometric detection of apoptosis
After the cells were treated with indicated concentration of forchlorfenuron, apoptosis rate was evaluated with Annexin V-FITC/PI Apoptosis kit according to the manufacturer’s brochures. In brief, the cells were harvested, washed twice with cold PBS, incubated with the 5µl FITC-Annexin V and 1µl PI working solution (100µg/ml) for 15 min in the dark at room temperature, and then cellular fluorescence was measured by flow cytometry analysis with a FACSCalibur Flow Cytometer (BD Biosciences, USA).
Detection of intracellular ROS production
The production of intracellular ROS was analyzed using Reactive Oxygen Species detection kit according to the manufacturer’s brochures (Invitrogen, California, USA). Briefly, cells were washed with 1× wash buffer after treatment, and then ROS detection solution was added. The cells were stained at 37℃ in the dark for 30 min and visualized by fluorescence microscopy (Leica, Germany).
Determination of mitochondrial transmembrane potential (Δψm)
5,5’,6,6’-Tetrachloro-1,1’,3,3’-tetraethylbenzimidazolyl-carbocyanine iodide (JC-1) (Invitrogen, USA) was used to determine the changes in mitochondrial trans-membrane potential. 10µl of 200µM JC-1 (2 µM final concentration) was added to the cells and incubated for 30 min in the dark and washed twice with PBS. The cells labeled with JC-1 were observed under fluorescence microscopy (Leica, Germany).
Western blot analysis
Cultured HepaRG cells were harvested, washed with PBS, and lysed with cell lysis buffer containing 1% phenylmethylsulfonylfluoride. The lysate was centrifuged at 12,000g for 15 min to remove the insoluble materials. Supernates were collected. Primary antibodies (p-38, p-p38, JNK, p-JNK, MKK3, p-MKK3, p-ATF2, ATF2, bcl-2, bax) from were used for indicated proteins.
Statistics
All data were expressed as the means ± SD of at least three independent experiments. Significant differences between the groups were determined by ANOVA. The level of significance was set at p < 0.05.