LGALS1 was abnormally expressed in cancer tissues
According to the Oncomine database, LGALS1 expression was increased in tissues of nervous system tumors, breast cancer, cervical cancer, colorectal cancer, ESCA, gastric cancer, head and neck cancer, kidney cancer, and leukemia, while the expression in bladder cancer, cervical cancer, leukemia, lung cancer, prostate cancer and other tissues were decreased (Fig. 1A). In addition, LGALS1 expression was up-regulated in cholangiocarcinoma (CHOL), ESCA, head and neck squamous cell carcinoma (HNSC), kidney renal clear cell carcinoma (KIRC), HCC and other tumor tissues, while it decreased in breast invasive carcinoma (BRCA), lung adenocarcinoma (LUAD), lung squamous cell carcinoma (LUSC) and other tumor tissues in the Timer database (Fig. 1B, P < 0.05).
Expression of LGALS1 and its diagnostic value in ESCA
In addition, LGALS1 was elevated in ESCA and its subtypes (Table 1 and Fig. 2). In the Oncomine database, Hao and Kim found that LGALS1 expression was elevated in esophageal adenocarcinoma compared with normal esophageal tissues (P < 0.05). Hu and Su found that LGALS1 expression was elevated in esophageal squamous cell carcinoma compared with normal esophageal tissues (P < 0.05). Kim also found that LGALS1 expression was higher in Barrett's esophagus than in normal esophageal tissues (P < 0.05). In the TCGA database, LGALS1 expression was elevated in ESCA tissues compared to normal esophageal tissues, and ROC analysis showed AUC = 0.8511 (Fig. 2, P < 0.001).
Table 1 LGALS1 expression in esophageal cancer tissue in the Oncomine database.
|
ESCA vs. Normal
|
Fold change
|
t-test
|
p-value
|
Ref
|
LGALS1
|
Esophageal Adenocarcinoma vs. Normal
|
11.066
|
7.781
|
4.32E-6
|
Hao
|
Esophageal Adenocarcinoma vs. Normal
|
4.481
|
8.571
|
6.95E-14
|
Kim
|
Barrett's Esophagus vs. Normal
|
2.004
|
3.860
|
3.28E-4
|
Kim
|
esophageal squamous carcinoma vs. Normal
|
3.850
|
5.694
|
1.64E-6
|
Hu
|
esophageal squamous carcinoma vs. Normal
|
1.905
|
5.039
|
1.06E-6
|
Su
|
Increased expression of LGALS1 was associated with the clinicopathological characteristics of ESCA patients
In the Ualcan database, we found that LGALS1 expression levels was correlated with the clinicopathological characteristics of ESCA patients (Fig. 3). In detail, the expression level of LGALS1 was related to the age of ESCA patients (41-60 years vs 61-80 years), ethnicity (Caucasian vs Asian; African American vs Asian), weight (Normal Weight vs Extreme Weight; Normal Weight vs Obese; Normal Weight vs Extreme Obese; Extreme Weight vs Extreme Obese; Obese vs Extreme Obese), smoking history (Non smoker vs Reformed smoker 1), cancer stage (Stage 1 vs Stage 2; Stage 1 vs Stage 3), tumor grade (Grade 2 vs Grade 3), histological subtype (Adenocarcinoma vs Squamous -cell-carcinoma) and lymph node metastasis (N0 vs N1; N0 vs N2) (Fig. 3, P < 0.05).
LGALS1 co-expressed genes
482 genes of LGALS1 with moderate or higher levels were screened, of which 349 were positively correlated (Table 2) and 133 were negatively correlated (Table 3). The top 10 genes of positively and negatively correlated with LGALS1 co-expressed genes are shown in Fig. 4.
Table 2 LGALS1 positively related genes.
Gene
|
Cor
|
Gene
|
Cor
|
Gene
|
Cor
|
Gene
|
Cor
|
Gene
|
Cor
|
Gene
|
Cor
|
Gene
|
Cor
|
COL6A2
|
0.816
|
ADAMTS12
|
0.677
|
MMP11
|
0.629
|
COL7A1
|
0.595
|
GJA1
|
0.565
|
SGTB
|
0.541
|
RNF122
|
0.518
|
EMP3
|
0.804
|
GAS1
|
0.677
|
P4HA3
|
0.629
|
CAV2
|
0.595
|
CHSY3
|
0.564
|
PACS1
|
0.541
|
NINJ1
|
0.518
|
TNFAIP6
|
0.8
|
ADAM12
|
0.675
|
SULF1
|
0.628
|
LOX
|
0.595
|
MAPK11
|
0.564
|
RILPL1
|
0.54
|
HK3
|
0.517
|
CERCAM
|
0.797
|
RAB31
|
0.675
|
CHST11
|
0.626
|
SLC39A13
|
0.593
|
AMIGO2
|
0.564
|
OSCAR
|
0.539
|
PTHLH
|
0.517
|
COL5A1
|
0.791
|
ADAMTS2
|
0.673
|
VEGFC
|
0.626
|
VKORC1
|
0.593
|
HHIPL1
|
0.563
|
LHFPL6
|
0.539
|
PLS3
|
0.516
|
BGN
|
0.787
|
EVA1B
|
0.673
|
CHST15
|
0.625
|
HCFC1R1
|
0.593
|
PDGFC
|
0.563
|
THBS1
|
0.538
|
FAM89B
|
0.516
|
COL1A1
|
0.784
|
MSN
|
0.672
|
SNAI2
|
0.625
|
FHL3
|
0.592
|
CD14
|
0.562
|
COLGALT1
|
0.538
|
CNGB1
|
0.516
|
COL1A2
|
0.781
|
CAV1
|
0.671
|
CD276
|
0.625
|
FCGR2A
|
0.592
|
GNAI2
|
0.562
|
SELENOM
|
0.538
|
TUBB6
|
0.516
|
COL6A1
|
0.78
|
GLT8D2
|
0.669
|
SPOCK1
|
0.623
|
NCS1
|
0.591
|
AGTRAP
|
0.56
|
ISM1
|
0.538
|
MSR1
|
0.516
|
INHBA
|
0.775
|
LUM
|
0.668
|
EHD2
|
0.623
|
MEIS3
|
0.591
|
SERPINF1
|
0.56
|
GUCY1A1
|
0.538
|
FBN1
|
0.515
|
CLEC11A
|
0.765
|
PLAU
|
0.668
|
TMEM200B
|
0.623
|
TSPAN4
|
0.591
|
FJX1
|
0.56
|
COL18A1
|
0.537
|
RTN4
|
0.515
|
MFAP2
|
0.759
|
PODNL1
|
0.668
|
P4HA2
|
0.623
|
FLNA
|
0.59
|
PIK3CD
|
0.56
|
RFTN1
|
0.536
|
PLXDC1
|
0.514
|
COL3A1
|
0.75
|
POSTN
|
0.667
|
PLOD1
|
0.623
|
HAS2
|
0.589
|
WDR54
|
0.56
|
CYP27C1
|
0.535
|
MN1
|
0.514
|
CMTM3
|
0.747
|
GFPT2
|
0.666
|
SERPINH1
|
0.621
|
ARL4C
|
0.588
|
RARRES2
|
0.559
|
DZIP1
|
0.535
|
AIF1
|
0.513
|
COL5A2
|
0.745
|
MMP2
|
0.666
|
FSTL3
|
0.618
|
AXL
|
0.587
|
FBLN2
|
0.559
|
FLRT2
|
0.535
|
MMP17
|
0.513
|
PPP1R18
|
0.742
|
CAVIN3
|
0.665
|
PRNP
|
0.618
|
SHISAL1
|
0.587
|
DCBLD1
|
0.559
|
ASAP1
|
0.535
|
PDLIM4
|
0.513
|
ITGA5
|
0.74
|
TWIST2
|
0.665
|
GLI3
|
0.617
|
BASP1
|
0.586
|
PRRX2
|
0.558
|
CCDC8
|
0.535
|
MT2A
|
0.512
|
FAP
|
0.738
|
P3H1
|
0.664
|
CDH11
|
0.617
|
QKI
|
0.585
|
HAPLN3
|
0.558
|
TYROBP
|
0.535
|
WNT2
|
0.512
|
VIM
|
0.733
|
CLMP
|
0.663
|
GLIS1
|
0.615
|
ARSI
|
0.584
|
KDELC1
|
0.558
|
GXYLT2
|
0.534
|
FADS3
|
0.511
|
PDPN
|
0.733
|
GPR68
|
0.663
|
C1R
|
0.615
|
SPON2
|
0.582
|
GUCY1B1
|
0.558
|
SNAPC2
|
0.534
|
ELOVL5
|
0.511
|
PRRX1
|
0.731
|
CPXM1
|
0.662
|
NLGN2
|
0.614
|
C1S
|
0.581
|
BEND6
|
0.558
|
BICC1
|
0.533
|
S100A3
|
0.51
|
PCOLCE
|
0.73
|
TWIST1
|
0.661
|
COL16A1
|
0.614
|
ANGPTL2
|
0.581
|
PXDN
|
0.557
|
WIPF1
|
0.533
|
C8orf58
|
0.509
|
TGFBI
|
0.729
|
DKK3
|
0.661
|
MXRA8
|
0.613
|
SMIM3
|
0.581
|
DENND5A
|
0.557
|
NXN
|
0.532
|
P3H3
|
0.508
|
KIRREL1
|
0.726
|
HOMER3
|
0.66
|
S1PR2
|
0.612
|
SNAPC1
|
0.581
|
FHOD3
|
0.557
|
MAPK12
|
0.532
|
KLHL5
|
0.508
|
COL5A3
|
0.725
|
COL12A1
|
0.659
|
CD248
|
0.612
|
GALNT18
|
0.58
|
FIBIN
|
0.556
|
RUNX2
|
0.532
|
THSD1
|
0.507
|
HTRA3
|
0.724
|
ACTN1
|
0.658
|
OLFM2
|
0.611
|
TIMP2
|
0.579
|
GGT5
|
0.556
|
FOXC2
|
0.531
|
FRMD6
|
0.507
|
THY1
|
0.722
|
PGF
|
0.657
|
GLIPR1
|
0.611
|
CDC42EP3
|
0.579
|
COL27A1
|
0.555
|
COL4A2
|
0.53
|
CORO6
|
0.507
|
SCARF2
|
0.722
|
EDNRA
|
0.657
|
MMP13
|
0.61
|
APCDD1L
|
0.578
|
NNMT
|
0.555
|
SIRPA
|
0.53
|
SPSB1
|
0.506
|
PDLIM7
|
0.719
|
MARVELD1
|
0.655
|
SLC12A4
|
0.609
|
GPSM1
|
0.576
|
PDCD1LG2
|
0.553
|
SRPX
|
0.53
|
IFI27L2
|
0.506
|
LOXL2
|
0.715
|
GNB4
|
0.654
|
ANXA5
|
0.609
|
TUBA1A
|
0.576
|
EMILIN1
|
0.553
|
FNDC1
|
0.529
|
MAP7D1
|
0.506
|
MMP14
|
0.714
|
SERPINE1
|
0.647
|
IGFBP7
|
0.608
|
LTBP2
|
0.576
|
TGFB3
|
0.552
|
GNA12
|
0.529
|
MED10
|
0.505
|
IKBIP
|
0.712
|
CHN1
|
0.647
|
UCN2
|
0.608
|
ITGA11
|
0.576
|
NRP2
|
0.551
|
MAP7D3
|
0.529
|
FAM20C
|
0.505
|
FN1
|
0.711
|
PLPP4
|
0.647
|
WISP1
|
0.607
|
FCGR3A
|
0.575
|
MYH9
|
0.55
|
CD109
|
0.529
|
GJC1
|
0.505
|
CTHRC1
|
0.711
|
NOX4
|
0.645
|
CSGALNACT2
|
0.606
|
LTBP1
|
0.574
|
HDGFL3
|
0.55
|
SPI1
|
0.528
|
P4HA1
|
0.505
|
BMP1
|
0.705
|
HTRA1
|
0.644
|
TGFB1
|
0.606
|
EVC
|
0.573
|
LRRC17
|
0.549
|
KIAA0930
|
0.528
|
COLEC12
|
0.505
|
SPARC
|
0.704
|
ANTXR1
|
0.643
|
FSCN1
|
0.605
|
GPX7
|
0.573
|
ICAM5
|
0.549
|
DAPK3
|
0.528
|
ST6GALNAC5
|
0.505
|
CAVIN1
|
0.699
|
MFGE8
|
0.642
|
MSANTD3
|
0.605
|
GLIPR2
|
0.572
|
EVA1A
|
0.548
|
NRM
|
0.527
|
CYR61
|
0.504
|
GPX8
|
0.694
|
RCN3
|
0.641
|
NTM
|
0.603
|
MSC
|
0.571
|
TREM2
|
0.548
|
LRP12
|
0.527
|
DCBLD2
|
0.504
|
SUGCT
|
0.693
|
COL11A1
|
0.641
|
COPZ2
|
0.601
|
CCDC102A
|
0.57
|
DRAP1
|
0.548
|
MAFB
|
0.526
|
CORO1C
|
0.504
|
CTSK
|
0.688
|
SFRP2
|
0.64
|
TGFB1I1
|
0.6
|
TENM3
|
0.57
|
GPR176
|
0.548
|
CLEC5A
|
0.526
|
FPR3
|
0.503
|
OLFML2B
|
0.688
|
VCAN
|
0.639
|
MOB3A
|
0.599
|
CNPY4
|
0.57
|
PTMS
|
0.547
|
GSDME
|
0.526
|
TMSB10
|
0.503
|
EFEMP2
|
0.688
|
COL8A2
|
0.639
|
LRRC15
|
0.599
|
GREM1
|
0.569
|
LAMP5
|
0.547
|
EVL
|
0.523
|
ITGB5
|
0.503
|
AEBP1
|
0.687
|
ISLR
|
0.636
|
FCER1G
|
0.598
|
CEBPB
|
0.569
|
MMP9
|
0.546
|
KIF3C
|
0.523
|
CCM2
|
0.503
|
SYDE1
|
0.686
|
SPHK1
|
0.634
|
TSPAN9
|
0.598
|
LRRC8C
|
0.569
|
PLEKHO1
|
0.545
|
LOXL1
|
0.523
|
MAF
|
0.503
|
COL6A3
|
0.686
|
FSTL1
|
0.634
|
SPOCD1
|
0.597
|
HES4
|
0.568
|
MYO5A
|
0.544
|
CHSY1
|
0.521
|
SLAMF8
|
0.502
|
TNC
|
0.685
|
CLIC4
|
0.633
|
FEZ1
|
0.597
|
RFLNB
|
0.567
|
CD86
|
0.543
|
ADAM19
|
0.521
|
LIMK1
|
0.501
|
MRC2
|
0.685
|
COL10A1
|
0.632
|
UBTD1
|
0.596
|
THBS2
|
0.567
|
CDK14
|
0.542
|
NID2
|
0.521
|
ASPN
|
0.501
|
C1QTNF6
|
0.684
|
DSE
|
0.632
|
SH3PXD2B
|
0.596
|
RBMS1
|
0.567
|
RAB3IL1
|
0.542
|
AP1M1
|
0.521
|
PHLDB2
|
0.501
|
TSHZ3
|
0.684
|
PDGFRB
|
0.63
|
RGS19
|
0.596
|
CALU
|
0.566
|
TCF7L1
|
0.542
|
KATNAL1
|
0.519
|
SERPING1
|
0.501
|
ZNF469
|
0.683
|
NREP
|
0.63
|
CALD1
|
0.596
|
COL8A1
|
0.565
|
TPST1
|
0.541
|
CDH13
|
0.519
|
|
|
Note: Cor, correlation coefficient.
Table 3 LGALS1 negatively related genes.
Gene
|
Cor
|
Gene
|
Cor
|
Gene
|
Cor
|
Gene
|
Cor
|
Gene
|
Cor
|
SH3BGRL2
|
-0.675
|
MANSC1
|
-0.567
|
LLGL2
|
-0.542
|
BICDL2
|
-0.527
|
ALDH1A1
|
-0.508
|
RBM47
|
-0.647
|
C1orf210
|
-0.565
|
KIAA1211L
|
-0.542
|
MYH14
|
-0.526
|
SLC37A1
|
-0.508
|
ATP8B1
|
-0.635
|
PRKAB1
|
-0.564
|
CLCN3
|
-0.542
|
C1orf116
|
-0.525
|
ABHD2
|
-0.508
|
PLEKHA7
|
-0.624
|
CYP3A5
|
-0.564
|
CYP2C18
|
-0.541
|
AFDN
|
-0.524
|
RAB17
|
-0.507
|
FOXA1
|
-0.611
|
ACOX1
|
-0.563
|
ATP10B
|
-0.541
|
TST
|
-0.523
|
MYZAP
|
-0.507
|
TJP3
|
-0.61
|
MYO5B
|
-0.563
|
MUC20
|
-0.54
|
AHCYL2
|
-0.522
|
ABCD3
|
-0.507
|
LIPH
|
-0.607
|
CEACAM5
|
-0.561
|
FUT6
|
-0.54
|
PIP5K1B
|
-0.521
|
NOSTRIN
|
-0.506
|
FAM83E
|
-0.607
|
FAM3D
|
-0.559
|
OCLN
|
-0.539
|
ETFDH
|
-0.52
|
MFSD9
|
-0.506
|
TMPRSS2
|
-0.6
|
TMEM45B
|
-0.558
|
ABLIM1
|
-0.538
|
PLEKHH1
|
-0.518
|
FUT3
|
-0.506
|
SOWAHB
|
-0.596
|
UBL3
|
-0.554
|
ACADSB
|
-0.538
|
FAM221A
|
-0.518
|
PSCA
|
-0.506
|
GPD1L
|
-0.593
|
MYO5C
|
-0.554
|
ST6GALNAC1
|
-0.538
|
SSTR1
|
-0.518
|
FMO5
|
-0.506
|
POF1B
|
-0.59
|
TSPAN12
|
-0.553
|
UNC13B
|
-0.538
|
ATP8A1
|
-0.517
|
SMPD3
|
-0.505
|
ERBB3
|
-0.588
|
ARFGEF3
|
-0.552
|
VSIG2
|
-0.537
|
HPGD
|
-0.517
|
ICA1
|
-0.505
|
ELF3
|
-0.588
|
SHROOM3
|
-0.551
|
TMEM125
|
-0.536
|
AKR7A3
|
-0.515
|
NBEAL2
|
-0.505
|
RALGPS1
|
-0.588
|
DOP1B
|
-0.549
|
RAB11FIP4
|
-0.536
|
HID1
|
-0.515
|
TTC39A
|
-0.504
|
PLEKHA6
|
-0.586
|
EPB41L1
|
-0.549
|
SELENBP1
|
-0.536
|
MECOM
|
-0.514
|
XK
|
-0.504
|
GOLPH3L
|
-0.586
|
LDHD
|
-0.549
|
RAB11FIP1
|
-0.536
|
VSIG10
|
-0.514
|
OVOL2
|
-0.504
|
GALNT12
|
-0.581
|
HDHD3
|
-0.548
|
COBL
|
-0.535
|
CEACAM7
|
-0.513
|
FUT2
|
-0.504
|
FAM3B
|
-0.577
|
CHP1
|
-0.545
|
TMEM238L
|
-0.535
|
SIM2
|
-0.513
|
LCOR
|
-0.503
|
CAMSAP3
|
-0.575
|
DUOX2
|
-0.544
|
PLS1
|
-0.534
|
MINDY1
|
-0.513
|
PLAC8
|
-0.503
|
CYP4F12
|
-0.575
|
SAMD5
|
-0.544
|
SMIM5
|
-0.531
|
PAQR8
|
-0.512
|
MYRF
|
-0.503
|
PRR15L
|
-0.575
|
B3GNT3
|
-0.544
|
PPFIBP2
|
-0.531
|
PLLP
|
-0.512
|
DEGS2
|
-0.501
|
MKRN2OS
|
-0.574
|
CAPN5
|
-0.544
|
CPEB3
|
-0.53
|
KIAA0232
|
-0.511
|
SH3YL1
|
-0.501
|
BSPRY
|
-0.574
|
FA2H
|
-0.544
|
PPARG
|
-0.529
|
KLF3
|
-0.511
|
SLC35A3
|
-0.501
|
CGN
|
-0.571
|
C9orf152
|
-0.543
|
PIK3C2B
|
-0.527
|
SLC1A1
|
-0.51
|
HNF4G
|
-0.501
|
S100P
|
-0.57
|
FRK
|
-0.543
|
STX19
|
-0.527
|
CCDC125
|
-0.51
|
|
|
SH2D4A
|
-0.57
|
EPB41
|
-0.543
|
SLC44A3
|
-0.527
|
MAML3
|
-0.51
|
|
|
Note: Cor, correlation coefficient.
GO and KEGG analysis
To further understand the potential function of LGALS1 in ESCA progression, we performed GO and KEGG on LGALS1 co-expressed genes. GO annotation found that LGALS1 co-expressed genes were mainly involved in endothelial cell differentiation, transforming growth factor receptor signaling pathway, epithelial cell proliferation, and ECM receptor interaction (Fig. 5A and online Table S1). KEGG found that LGALS1 co-expressed genes were mainly involved in leukocyte migration, transcriptional dysregulation during cancer, and PI3K/AKT signaling pathways (Fig. 5B and Table 4). GSEA showed that elevated LGALS1 was mainly enriched for ECM receptor interactions, cancer pathways, TGF beta signaling pathways, and cytokine-to-cytokine interactions (Fig. 6 and Table 5).
Table 4 Signaling mechanism involved in LGALS1 co-expressed genes via KEGG.
ID
|
Description
|
Count
|
pvalue
|
p. adjust
|
hsa04974
|
Protein digestion and absorption
|
17
|
1.22E-10
|
2.84E-08
|
hsa04510
|
Focal adhesion
|
22
|
3.30E-09
|
3.86E-07
|
hsa05205
|
Proteoglycans in cancer
|
22
|
5.27E-09
|
4.11E-07
|
hsa04933
|
AGE-RAGE signaling pathway in diabetic complications
|
14
|
1.44E-07
|
8.43E-06
|
hsa04512
|
ECM-receptor interaction
|
13
|
2.14E-07
|
1.00E-05
|
hsa04926
|
Relaxin signaling pathway
|
14
|
3.38E-06
|
0.0001
|
hsa00532
|
Glycosaminoglycan biosynthesis-chondroitin sulfate
/dermatan sulfate
|
6
|
6.28E-06
|
0.0002
|
hsa04380
|
Osteoclast differentiation
|
13
|
1.58E-05
|
0.0005
|
hsa04145
|
Phagosome
|
13
|
9.71E-05
|
0.0023
|
hsa04670
|
Leukocyte transendothelial migration
|
11
|
9.80E-05
|
0.0023
|
hsa05165
|
Human papillomavirus infection
|
20
|
0.0002
|
0.0040
|
hsa05146
|
Amoebiasis
|
10
|
0.0002
|
0.0040
|
hsa04611
|
Platelet activation
|
11
|
0.0002
|
0.0044
|
hsa04151
|
PI3K-Akt signaling pathway
|
20
|
0.0005
|
0.0080
|
hsa05133
|
Pertussis
|
8
|
0.0006
|
0.0087
|
hsa05202
|
Transcriptional misregulation in cancer
|
13
|
0.0007
|
0.0103
|
hsa04810
|
Regulation of actin cytoskeleton
|
14
|
0.0008
|
0.0112
|
hsa04540
|
Gap junction
|
8
|
0.0015
|
0.0186
|
hsa05130
|
Pathogenic Escherichia coli infection
|
13
|
0.0015
|
0.0186
|
hsa04071
|
Sphingolipid signaling pathway
|
9
|
0.0027
|
0.0320
|
hsa04530
|
Tight junction
|
11
|
0.0032
|
0.0352
|
hsa00601
|
Glycosphingolipid biosynthesis - lacto and neolacto series
|
4
|
0.0041
|
0.0439
|
hsa04928
|
Parathyroid hormone synthesis, secretion and action
|
8
|
0.0047
|
0.0480
|
hsa05152
|
Tuberculosis
|
11
|
0.0051
|
0.0497
|
Note: KEGG, Kyoto Encyclopedia of Genes and Genomes.
Table 5 signaling pathways associated with increased LGALS1 expression via GSEA.
Name
|
SIZE
|
NES
|
NOM p-val
|
KEGG_ECM_RECEPTOR_INTERACTION
|
84
|
2.157
|
0
|
KEGG_FOCAL_ADHESION
|
199
|
2.118
|
0
|
KEGG_GLYCOSAMINOGLYCAN_BIOSYNTHESIS_CHONDROITIN_SULFATE
|
22
|
1.962
|
0
|
KEGG_REGULATION_OF_ACTIN_CYTOSKELETON
|
212
|
1.850
|
0.004
|
KEGG_RENAL_CELL_CARCINOMA
|
70
|
1.791
|
0.004
|
KEGG_BLADDER_CANCER
|
42
|
1.747
|
0.006
|
KEGG_PATHWAYS_IN_CANCER
|
325
|
1.704
|
0.004
|
KEGG_DILATED_CARDIOMYOPATHY
|
90
|
1.684
|
0.034
|
KEGG_HYPERTROPHIC_CARDIOMYOPATHY_HCM
|
83
|
1.662
|
0.037
|
KEGG_PRION_DISEASES
|
35
|
1.643
|
0.023
|
KEGG_ARRHYTHMOGENIC_RIGHT_VENTRICULAR_CARDIOMYOPATHY_ARVC
|
74
|
1.593
|
0.044
|
KEGG_CYTOKINE_CYTOKINE_RECEPTOR_INTERACTION
|
262
|
1.578
|
0.047
|
KEGG_SMALL_CELL_LUNG_CANCER
|
84
|
1.572
|
0.036
|
KEGG_TGF_BETA_SIGNALING_PATHWAY
|
85
|
1.544
|
0.033
|
KEGG_GLYCOSAMINOGLYCAN_BIOSYNTHESIS_HEPARAN_SULFATE
|
26
|
1.511
|
0.024
|
KEGG_PANCREATIC_CANCER
|
70
|
1.510
|
0.043
|
KEGG_GAP_JUNCTION
|
89
|
1.487
|
0.033
|
KEGG_GLIOMA
|
65
|
1.465
|
0.049
|
KEGG_MELANOMA
|
71
|
1.417
|
0.047
|
Note: GSEA, Gene Set Enrichment Analysis
Hub genes expression and clinical significance analysis in PPI network
The potential biological function of LGALS1 was speculated by identifying the functions of LGALS1 co-expressed genes. The PPI network relationship was shown in Fig. 7A. The hub genes were COL1A1, FN1, COL1A2, COL3A1, and COL5A1, COL5A2, COL4A2, COL18A1, COL6A2, and COL6A1 (Fig. 7B and Table 6). In the GEPIA database, we found that LGALS1 expression level was related to hub genes expression level in ESCA tissues (Fig. 8). In the TCGA database, we found that COL1A1, FN1, COL1A2, COL3A1, COL5A1, COL5A2, COL4A2, COL18A1, and COL6A1 were abnormally expressed in ESCA tissues (Fig. 9) and had diagnostic significance (Fig. 10, P < 0.05), while the expression and diagnostic value of COL6A2 in ESCA was not statistically significant.
Table 6 Hub genes in PPI networks.
Name
|
description
|
Score
|
COL1A1
|
Collagen type I alpha 1 chain
|
47
|
FN1
|
Fibronectin 1
|
47
|
COL1A2
|
Collagen type I alpha 2 chain
|
44
|
COL3A1
|
Collagen type III alpha 1 chain
|
41
|
COL5A1
|
Collagen type V alpha 1 chain
|
36
|
COL5A2
|
Collagen type V alpha 2 chain
|
34
|
COL4A2
|
Collagen type IV alpha 2 chain
|
34
|
COL18A1
|
Collagen type XVIII alpha 1 chain
|
33
|
COL6A2
|
Collagen type VI alpha 2 chain
|
32
|
COL6A1
|
Collagen type VI alpha 1 chain
|
31
|